View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4520-Insertion-1 (Length: 1100)
Name: NF4520-Insertion-1
Description: NF4520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4520-Insertion-1 |
 | |
|
| [»] scaffold0061 (2 HSPs) |
| | |
|
| [»] scaffold0017 (5 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 804; Significance: 0; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 804; E-Value: 0
Query Start/End: Original strand, 143 - 1097
Target Start/End: Complemental strand, 35899789 - 35898824
Alignment:
| Q |
143 |
ctagtgttttcaatttcccccaaaaccaagtaggtattggatctagattactgacatttgaaaggataagataggataaggagttttgtgtttgaagcca |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35899789 |
ctagtgttttcaatttcccccaaaaccaagtaggtattggatctagattactgacatttgaaaggataagataggataaggagttttgtgtttgaagcca |
35899690 |
T |
|
| Q |
243 |
gttaggaaatctataatttagatttcaagatgctagattcaaatttattaatttaaagggaggaacccaatcataactaaccttcacagtcagaaagtta |
342 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
35899689 |
gttaggaaatctataatttagattgcaagatgctagattcaaatttattaatttaaagggaggaacccagtcataactaaccttcacagtcagaaagtta |
35899590 |
T |
|
| Q |
343 |
tgagacaaatatagatcttccaatttggagaggttagtgaaatgagattcagagatgacaccttcaaaaccgtttacgctcaaatccaaatactttgact |
442 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
35899589 |
taagacaaatatagatcttccaatttggagaggttagtgaaatgagattcagagatgacaccttcaaaagcgtttacgctcaaatccaaatactttaact |
35899490 |
T |
|
| Q |
443 |
ccataattgatccaatgcttgtgggtatttctccaaataatttatttctagcaagatacaacattctcaaagatgataagattgaaagatttggtaacat |
542 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35899489 |
ccataattgatccaatgctcgtgggtatttctccaaataatttatttccagcaagatacaacattctcaaagatgataagattgaaagatttggtaacat |
35899390 |
T |
|
| Q |
543 |
gccagtaatttgattatttgataaggataattcctgtaacgaggatacatttccaatgcagttcgaatagttattatgaactgtaaagtatgaaatatct |
642 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35899389 |
gccagtaatttgattatttgataaggataattcctgtaacgaggatacatttccaatgcagttcgaatagttattatgaactgtaaagtatgaaatatct |
35899290 |
T |
|
| Q |
643 |
ccgcttaagcggttatcattagcccaaaagctcttcaatgtacatatgttcccaatagatgtagggatcttgccttctaaactattgccatccagataga |
742 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35899289 |
ccgcttaagcggttatcattagcccaaaagctcttcaatgtacatatgttcccaataaatgtagggatcttgccttctaaactattgccatccagataga |
35899190 |
T |
|
| Q |
743 |
gatccacaagtgaaaacatcatagtgccaaaatcatcagggattgatccaatgagttgattgccgctgagatcaaggaatcgcaacgatgagagattccc |
842 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||| |||||||||||| |
|
|
| T |
35899189 |
gatccacaagtgaaagcatcatagtgccaaaatcatcagggattgatccaatgagttgattgcggctgagatcaaggtattgcaacaatgagagattcct |
35899090 |
T |
|
| Q |
843 |
aagttgagaaggaatcttcccatcataaccactatttgagagatcaatgtatcgcaagttgctgaaggagccaataaattttgggatttgaccactagta |
942 |
Q |
| |
|
||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35899089 |
aagctgagcaggaatcttcccatcgaaaccactatttgagagatcaatgtatcgcaagttgctgaaggagccaataaattttgggatttgaccactagta |
35898990 |
T |
|
| Q |
943 |
ttca-aaaaccaaggtctaaatacgtaagatgttgc-attcagttattaaagggttgattttgcctctcaaatagcatgtttttga--catgc-aatc-a |
1036 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||| | |
|
|
| T |
35898989 |
ttcaaaaaaccaaggtctaaatatgtaagatgttgcaattcagttattaaagggttgattttgcctctcaaatagcgtgtttttgaaccatgcaaatcaa |
35898890 |
T |
|
| Q |
1037 |
gactttgaatataaccagtttggt--gtgcattg-actccttt-catttgcagc-atctgcatttg |
1097 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||| |||||||||| ||||||||||| |
|
|
| T |
35898889 |
gactttgaatataaccagtttggttgttgcattgaactcctttccatttgcagcaatctgcatttg |
35898824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 4e-72
Query Start/End: Original strand, 9 - 615
Target Start/End: Complemental strand, 44613337 - 44612731
Alignment:
| Q |
9 |
tgctttcaataaaaaagaaggaatgggaccttcaagttgatttacagccaaatgtattattggatgattggtaagattgagttccaaattaggaatcttg |
108 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| |||||| | ||||| ||| || | || |||||||||||||||||||||||||||||| || |
|
|
| T |
44613337 |
tgcttgcaataaaaaagaaggaatggaaccttcaaactgatttgaactcaaatttatcatagtattgttggtaagattgagttccaaattaggaatcatg |
44613238 |
T |
|
| Q |
109 |
ccagtgagattgttgtttgaaatgtctaagtaagctagtgttttcaatttcccccaaaaccaagtaggtattggatctagattactgacatttgaaagga |
208 |
Q |
| |
|
|| |||| ||||||||||||||| | | | ||||||||| |||||| |||||||||||| |||| ||||| || |||||| |||||||||||| |
|
|
| T |
44613237 |
cctgtgatattgttgtttgaaattgacatgccaactagtgtttgcaatttaccccaaaaccaaagaggtgttggagatatattactcacatttgaaaggg |
44613138 |
T |
|
| Q |
209 |
taagataggataaggagttttgtgtttgaagccagttaggaaatctataatttagatttcaagatgctagattcaaatttattaatttaaagggaggaac |
308 |
Q |
| |
|
|| | |||||| ||||||||||||||||| |||||||||||| |||| | ||| ||||||| || ||| ||| ||||| ||| || ||||| |
|
|
| T |
44613137 |
aaataatggataattcattttgtgtttgaagccaattaggaaatctagaattcatattacaagatgataagcccaatgttaataattgaaaagggggaac |
44613038 |
T |
|
| Q |
309 |
ccaatcataactaaccttcacagtcagaaagttatgagacaaatatagatcttccaatttggagaggttagtgaaatgagattcagagatgacaccttca |
408 |
Q |
| |
|
|||||||| ||||||||||| ||||| |||| | |||||| | ||| | ||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
44613037 |
ccaatcattactaaccttcatagtcaacgagttgtcagacaagtctagtttttccaatttggagaggttagtgaaatgggattcagagatgataccttca |
44612938 |
T |
|
| Q |
409 |
aaaccgtttacgctcaaatccaaatactttgactccataattgatccaatgcttgtgggtatttctccaaataatttatttctagcaagatacaacattc |
508 |
Q |
| |
|
||| |||| ||| || | |||||||| | |||| ||| |||||| ||||| | ||||||||||||| ||||||||| | |||| ||||| || |
|
|
| T |
44612937 |
aaagagtttccgcccaggtacaaatactgtaactcggtaagtgatccgatgctcgcgggtatttctccagttaatttattgacattaagaaccaacagtc |
44612838 |
T |
|
| Q |
509 |
tcaaagatgataagattgaaagatttggtaacatgccagtaatttgattatttgataaggataattcctgtaacgaggatacatttccaatgcagttcga |
608 |
Q |
| |
|
||||||| || | ||||||||| | ||||||| |||| | ||| | |||||| ||| ||| |||||||||||| |||| |||||||||||||| || |
|
|
| T |
44612837 |
tcaaagacgagaggattgaaaggtctggtaacttgcccgaaatctcattattccatagccatagttcctgtaacgatgatagatttccaatgcagtgaga |
44612738 |
T |
|
| Q |
609 |
atagtta |
615 |
Q |
| |
|
||||||| |
|
|
| T |
44612737 |
atagtta |
44612731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 780 - 948
Target Start/End: Complemental strand, 44144955 - 44144786
Alignment:
| Q |
780 |
agggattgatccaatgagttgattgccgctgagatcaaggaatcgcaacgatgagagattcccaagttgagaaggaatcttcccatcataaccactattt |
879 |
Q |
| |
|
||||||| ||||||||||| |||| ||| | ||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||| | | |
|
|
| T |
44144955 |
agggatttctccaatgagttcattgtagctaaaatcaaggtgtcgcaatcgtgagagattcccaagttgagcaggaatcttcccatcataaccaccaact |
44144856 |
T |
|
| Q |
880 |
gagagatc-aatgtatcgcaagttgctgaaggagccaataaattttgggatttgaccactagtattcaaa |
948 |
Q |
| |
|
|||||||| || || ||| || ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44144855 |
gagagatcaaaggtgtcgtaacttgctgaaggagccaataaattttgggatttgaccaccagtattcaaa |
44144786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 854 - 1001
Target Start/End: Complemental strand, 44611786 - 44611637
Alignment:
| Q |
854 |
gaatcttcccatcataaccactatttgagagatcaatgtatcgcaagttgctgaaggagccaataaattttgggatttgaccactagtattca-aaaacc |
952 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
44611786 |
gaatcttcccatcaaaaccactatttgagagatcaaggtatcttaagttgcagaaggagccaataaattttgggatttgaccactagtattcagataact |
44611687 |
T |
|
| Q |
953 |
aaggtctaaatacgtaagatgttgc-attcagttattaaagggttgattt |
1001 |
Q |
| |
|
|||| || ||| || ||||||||| | ||||||||| |||| ||||||| |
|
|
| T |
44611686 |
gaggtttagatatgttagatgttgcaactcagttattgaaggattgattt |
44611637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 244 - 721
Target Start/End: Original strand, 11544103 - 11544580
Alignment:
| Q |
244 |
ttaggaaatctataatttagatttcaagatgctagattcaaatttattaatttaaagggaggaacccaatcataactaaccttcacagtcagaaagttat |
343 |
Q |
| |
|
||||||||| | |||| ||||| |||||||||||| ||||| | ||||| ||| ||||||||||||| |||||| |||||||| | ||||| | |
|
|
| T |
11544103 |
ttaggaaatgttgaattgagattgcaagatgctagaaacaaatattgtaattgaaaaggaggaacccaatttgcactaactttcacagttggtaagttct |
11544202 |
T |
|
| Q |
344 |
gagacaaatatagatcttccaatttggagaggttagtgaaatgagattcagagatgacaccttcaaaaccgtttacgctcaaatccaaatactttgactc |
443 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||||| |||||||||| | ||||||||| |||| ||| || || |||| | | |||| |
|
|
| T |
11544203 |
gagacaaatctagttcttccaatttggagaggttagtgaaatgggattcagagacaatgccttcaaaagagtttccgcccagattcaaaatttctaactc |
11544302 |
T |
|
| Q |
444 |
cataattgatccaatgcttgtgggtatttctccaaataatttatttctagcaagatacaacattctcaaagatgataagattgaaagatttggtaacatg |
543 |
Q |
| |
|
||| |||||||||||| |||||||||||||||| ||| ||||| | | ||| |||| | |||||||||| | |||||| | | |||| | || |
|
|
| T |
11544303 |
ggtaagtgatccaatgctcgtgggtatttctccaattaaattattgtcatctagaatcaaccatgtcaaagatgagaggattgacaagtcaggtatcgtg |
11544402 |
T |
|
| Q |
544 |
ccagtaatttgattatttgataaggataattcctgtaacgaggatacatttccaatgcagttcgaatagttattatgaactgtaaagtatgaaatatctc |
643 |
Q |
| |
|
|||| || |||||||| |||||| ||| || ||||||||||| ||||||||||||| |||||||||||||| | |||| | |||||| ||| |
|
|
| T |
11544403 |
ccagaaaactgattattcgataagtataggtcttgtaacgaggaagcatttccaatgcatcgtgaatagttattatggatgataaaatctgaaatccctc |
11544502 |
T |
|
| Q |
644 |
cgcttaagcggttatcattagcccaaaagctcttcaatgtacatatgttcccaatagatgtagggatcttgccttcta |
721 |
Q |
| |
|
| || |||||||||||| ||| ||| || ||| || |||||||| ||||| ||| | |||||||||||||||| |
|
|
| T |
11544503 |
cactcaagcggttatcacgagcttcaaatgactgcaaggtgcatatgtttccaatggattttgggatcttgccttcta |
11544580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 807 - 948
Target Start/End: Original strand, 44785756 - 44785897
Alignment:
| Q |
807 |
gctgagatcaaggaatcgcaacgatgagagattcccaagttgagaaggaatcttcccatcataaccactatttgagagatcaatgtatcgcaagttgctg |
906 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||||| ||||||||| ||| | ||||||| | |||||| |||| |||||| ||||||||| |
|
|
| T |
44785756 |
gctgagatcaaggtgtcgcaattgtgagagattcccaagttgagtaggaatctttccaccgtaaccaccaactgagaggtcaaggtatcgtaagttgctg |
44785855 |
T |
|
| Q |
907 |
aaggagccaataaattttgggatttgaccactagtattcaaa |
948 |
Q |
| |
|
||||| |||||||||||||| |||||| || ||||| ||||| |
|
|
| T |
44785856 |
aaggatccaataaattttggaatttgatcattagtaatcaaa |
44785897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 789 - 933
Target Start/End: Original strand, 11544720 - 11544868
Alignment:
| Q |
789 |
tccaatgagttgattgccgctgagatcaaggaatcgcaacgatgagagattcccaagttgagaaggaat----cttcccatcataaccactatttgagag |
884 |
Q |
| |
|
||||||||||| |||| ||| ||||||||| || |||| ||||||||| ||||||||||||||||| |||| ||| |||| |||||||||||| |
|
|
| T |
11544720 |
tccaatgagttcattgtagctaagatcaaggtgtctcaactgtgagagattgccaagttgagaaggaatgaatcttcgcatgataataactatttgagag |
11544819 |
T |
|
| Q |
885 |
atcaatgtatcgcaagttgctgaaggagccaataaattttgggatttga |
933 |
Q |
| |
|
|| || ||||| || ||| | ||||||||||||||||||||||||||| |
|
|
| T |
11544820 |
attaaggtatcataacttggttaaggagccaataaattttgggatttga |
11544868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 44794953 - 44795118
Alignment:
| Q |
17 |
ataaaaaagaaggaatgggaccttcaagttgatttacagccaaatgtattattggatgattggtaagattgagttccaaattaggaatcttgccagtgag |
116 |
Q |
| |
|
||||||| |||||||||| |||||||| |||||| | ||||| ||||| ||| |||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
44794953 |
ataaaaaggaaggaatggaaccttcaaactgatttgaactcaaatctattacaggaattttggtaagattgagttccaaattaggaatcatgcctgtgat |
44795052 |
T |
|
| Q |
117 |
attgttgtttgaaatgtctaagtaagctagtgttttcaatttcccccaaaaccaagtaggtattgga |
183 |
Q |
| |
|
|||||| |||||||| | | | ||||||||| |||||| |||||||||||| |||||||||| |
|
|
| T |
44795053 |
attgtt-tttgaaattgacatgccaactagtgtttgcaatttaccccaaaaccaaagaggtattgga |
44795118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 363 - 403
Target Start/End: Complemental strand, 44145693 - 44145653
Alignment:
| Q |
363 |
caatttggagaggttagtgaaatgagattcagagatgacac |
403 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
44145693 |
caatttggagaggttagtgaaatgggattcagagacgacac |
44145653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 780 - 859
Target Start/End: Complemental strand, 44612164 - 44612085
Alignment:
| Q |
780 |
agggattgatccaatgagttgattgccgctgagatcaaggaatcgcaacgatgagagattcccaagttgagaaggaatct |
859 |
Q |
| |
|
||||||| |||| |||||| |||| | || ||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
44612164 |
agggatttctccagtgagttcattgtcacttagatcaaggtgtcgcaattgtgagagattcccaagttgagaaggaatct |
44612085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 11543943 - 11543985
Alignment:
| Q |
9 |
tgctttcaataaaaaagaaggaatgggaccttcaagttgattt |
51 |
Q |
| |
|
||||| |||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
11543943 |
tgcttgcaataaaagagaaggaatggaaccttcaagttgattt |
11543985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 124; Significance: 3e-63; HSPs: 2)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 81 - 599
Target Start/End: Original strand, 28720 - 29238
Alignment:
| Q |
81 |
aagattgagttccaaattaggaatcttgccagtgagattgttgtttgaaatgtctaagtaagctagtgttttcaatttcccccaaaaccaagtaggtatt |
180 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||| |||||||||||||||||||| ||| || || ||||| |||||| |||||||||||| |||||||| |
|
|
| T |
28720 |
aagattgagttctaaattaggaatcatgccagtaagattgttgtttgaaatgtccaagctagttattgtttgcaattttccccaaaaccaaataggtatt |
28819 |
T |
|
| Q |
181 |
ggatctagattactgacatttgaaaggataagataggataaggagttttgtgtttgaagccagttaggaaatctataatttagatttcaagatgctagat |
280 |
Q |
| |
|
||| || ||||||||||||||||||| |||| |||||| ||||||||||| ||||| ||||||||| || |||| | ||| ||| || || | |
|
|
| T |
28820 |
ggagatatattactgacatttgaaagggaaagagtggataattcattttgtgtttggagccaattaggaaatatagaattcatattacaatttgataaac |
28919 |
T |
|
| Q |
281 |
tcaaatttattaatttaaagggaggaacccaatcataactaaccttcacagtcagaaagttatgagacaaatatagatcttccaatttggagaggttagt |
380 |
Q |
| |
|
||| | || ||||| ||| |||||||||||||||| |||||||| || ||||| |||| | ||||| |||| || |||||||||||||||||| |
|
|
| T |
28920 |
ccaattctagtaattgaaaaggaggaacccaatcattactaacctccatagtcaatgagttgtcggacaaccatagccttttcaatttggagaggttagt |
29019 |
T |
|
| Q |
381 |
gaaatgagattcagagatgacaccttcaaaaccgtttacgctcaaatccaaatactttgactccataattgatccaatgcttgtgggtatttctccaaat |
480 |
Q |
| |
|
|||||| |||||||||| ||||||||||||| |||| ||||| | |||| |||| |||| ||| |||||| ||||| |||||||||||||||| | |
|
|
| T |
29020 |
gaaatgggattcagagacgacaccttcaaaagagtttcggctcaggtacaaactctttaactctgtaagtgatccgatgctcgtgggtatttctccaatt |
29119 |
T |
|
| Q |
481 |
aatttatt-tctagcaagatacaacattctcaaagatgataagattgaaagatttggtaacatgccagtaatttgattatttgataaggataattcctgt |
579 |
Q |
| |
|
|||||||| || | ||||| ||||| |||||||||||| | | |||||| | ||||||||||| | ||| | |||||| ||||| ||| ||||||| |
|
|
| T |
29120 |
aatttattgtcca-caagactcaacagtctcaaagatgagaggtttgaaaagtccggtaacatgcctgaaatctcattattcgataaccatagttcctgt |
29218 |
T |
|
| Q |
580 |
aacgaggatacatttccaat |
599 |
Q |
| |
|
||| | |||||||| ||||| |
|
|
| T |
29219 |
aacaatgatacattaccaat |
29238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 835 - 948
Target Start/End: Original strand, 29888 - 30001
Alignment:
| Q |
835 |
agattcccaagttgagaaggaatcttcccatcataaccactatttgagagatcaatgtatcgcaagttgctgaaggagccaataaattttgggatttgac |
934 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| | ||||||||||| |||| | || ||||||| ||| |||||||||||||||||||||| |
|
|
| T |
29888 |
agattcccaagttgaataggaatcttcccatcataaccaccaaatgagagatcaaggtattgtaatttgctgatggatccaataaattttgggatttgac |
29987 |
T |
|
| Q |
935 |
cactagtattcaaa |
948 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
29988 |
cactggtattcaaa |
30001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 124; Significance: 3e-63; HSPs: 5)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 81 - 599
Target Start/End: Complemental strand, 170072 - 169554
Alignment:
| Q |
81 |
aagattgagttccaaattaggaatcttgccagtgagattgttgtttgaaatgtctaagtaagctagtgttttcaatttcccccaaaaccaagtaggtatt |
180 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||| |||||||||||||||||||| ||| || || ||||| |||||| |||||||||||| |||||||| |
|
|
| T |
170072 |
aagattgagttctaaattaggaatcatgccagtaagattgttgtttgaaatgtccaagctagttattgtttgcaattttccccaaaaccaaataggtatt |
169973 |
T |
|
| Q |
181 |
ggatctagattactgacatttgaaaggataagataggataaggagttttgtgtttgaagccagttaggaaatctataatttagatttcaagatgctagat |
280 |
Q |
| |
|
||| || ||||||||||||||||||| |||| |||||| ||||||||||| ||||| ||||||||| || |||| | ||| ||| || || | |
|
|
| T |
169972 |
ggagatatattactgacatttgaaagggaaagagtggataattcattttgtgtttggagccaattaggaaatatagaattcatattacaatttgataaac |
169873 |
T |
|
| Q |
281 |
tcaaatttattaatttaaagggaggaacccaatcataactaaccttcacagtcagaaagttatgagacaaatatagatcttccaatttggagaggttagt |
380 |
Q |
| |
|
||| | || ||||| ||| |||||||||||||||| |||||||| || ||||| |||| | ||||| |||| || |||||||||||||||||| |
|
|
| T |
169872 |
ccaattctagtaattgaaaaggaggaacccaatcattactaacctccatagtcaatgagttgtcggacaaccatagccttttcaatttggagaggttagt |
169773 |
T |
|
| Q |
381 |
gaaatgagattcagagatgacaccttcaaaaccgtttacgctcaaatccaaatactttgactccataattgatccaatgcttgtgggtatttctccaaat |
480 |
Q |
| |
|
|||||| |||||||||| ||||||||||||| |||| ||||| | |||| |||| |||| ||| |||||| ||||| |||||||||||||||| | |
|
|
| T |
169772 |
gaaatgggattcagagacgacaccttcaaaagagtttcggctcaggtacaaactctttaactctgtaagtgatccgatgctcgtgggtatttctccaatt |
169673 |
T |
|
| Q |
481 |
aatttatt-tctagcaagatacaacattctcaaagatgataagattgaaagatttggtaacatgccagtaatttgattatttgataaggataattcctgt |
579 |
Q |
| |
|
|||||||| || | ||||| ||||| |||||||||||| | | |||||| | ||||||||||| | ||| | |||||| ||||| ||| ||||||| |
|
|
| T |
169672 |
aatttattgtcca-caagactcaacagtctcaaagatgagaggtttgaaaagtccggtaacatgcctgaaatctcattattcgataaccatagttcctgt |
169574 |
T |
|
| Q |
580 |
aacgaggatacatttccaat |
599 |
Q |
| |
|
||| | |||||||| ||||| |
|
|
| T |
169573 |
aacaatgatacattaccaat |
169554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017; HSP #2
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 780 - 1001
Target Start/End: Complemental strand, 173968 - 173745
Alignment:
| Q |
780 |
agggattgatccaatgagttgattgccgctgagatcaaggaatcgcaacgatgagagattcccaagttgagaaggaatcttcccatcataaccactattt |
879 |
Q |
| |
|
||||||| ||||||||||| |||| ||| ||||||||| ||| ||| ||| ||||| ||||||| | |||||| ||||||||||||| || |||| |
|
|
| T |
173968 |
agggatttctccaatgagttcattgtagctaagatcaaggtatcacaattgtgatagatttccaagttcaaaaggaaccttcccatcataatgaccattt |
173869 |
T |
|
| Q |
880 |
gagagatcaatgtatcgcaagttgctgaaggagccaataaattttgggatttgaccactagtattcaaa-aaccaaggtctaaatacgtaagatgttg-c |
977 |
Q |
| |
|
|| ||||||| || ||||| ||||||||||||||||||||||||| |||||||| ||||||||||||| ||| ||||||||||| || |||| ||| |
|
|
| T |
173868 |
gacagatcaaggtgccgcaacttgctgaaggagccaataaattttgagatttgactactagtattcaaataactgaggtctaaatatgttagattttgta |
173769 |
T |
|
| Q |
978 |
attcagttattaaagggttgattt |
1001 |
Q |
| |
|
| ||||||||| |||| ||||||| |
|
|
| T |
173768 |
actcagttattgaaggattgattt |
173745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 76 - 314
Target Start/End: Complemental strand, 181167 - 180929
Alignment:
| Q |
76 |
ttggtaagattgagttccaaattaggaatcttgccagtgagattgttgtttgaaatgtctaagtaagctagtgttttcaatttcccccaaaaccaagtag |
175 |
Q |
| |
|
||||| || |||||||||||||||||| || |||| || |||||||||||||||||||| | || | |||||||| |||||| |||||||||| || |
|
|
| T |
181167 |
ttggtgagtttgagttccaaattaggattcatgccggtcagattgttgtttgaaatgtccatgtcacatagtgtttgcaatttttcccaaaaccagtgag |
181068 |
T |
|
| Q |
176 |
gtattggatctagattactgacatttgaaaggataagataggataaggagttttgtgtttgaagccagttaggaaatctataatttagatttcaagatgc |
275 |
Q |
| |
|
|||||||| |||||||||||||| ||||||| ||||||| |||| |||||||||| || ||| | |||||||||| |||| ||||| ||||||| |
|
|
| T |
181067 |
gtattggagatagattactgacatctgaaaggtaaagatagtgtaagtgattttgtgttttaaaccaatcaggaaatctagaattcagattacaagatgt |
180968 |
T |
|
| Q |
276 |
tagattcaaatttattaatttaaagggaggaacccaatc |
314 |
Q |
| |
|
|||| |||| || ||||| ||| ||||||| |||||| |
|
|
| T |
180967 |
tagacccaaactttctaattgaaaaggaggaaaccaatc |
180929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 835 - 948
Target Start/End: Complemental strand, 168904 - 168791
Alignment:
| Q |
835 |
agattcccaagttgagaaggaatcttcccatcataaccactatttgagagatcaatgtatcgcaagttgctgaaggagccaataaattttgggatttgac |
934 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| | ||||||||||| |||| | || ||||||| ||| |||||||||||||||||||||| |
|
|
| T |
168904 |
agattcccaagttgaataggaatcttcccatcataaccaccaaatgagagatcaaggtattgtaatttgctgatggatccaataaattttgggatttgac |
168805 |
T |
|
| Q |
935 |
cactagtattcaaa |
948 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
168804 |
cactggtattcaaa |
168791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 362 - 615
Target Start/End: Complemental strand, 174697 - 174445
Alignment:
| Q |
362 |
ccaatttggagaggttagtgaaatgagattcagagatgacaccttcaaaaccgtttacgctcaaatccaaatactttgactccataattgatccaatgct |
461 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||||||| |||| ||||| | ||| || | ||||||| | ||||| ||||| |
|
|
| T |
174697 |
ccaatttggagaggttagtgaaatgcgattcagagacaacaccttcaaaagagtttctgctcagactcaatgtctgtaactccatgagcgatccgatgct |
174598 |
T |
|
| Q |
462 |
tgtgggtatttctccaaataatttatttctagcaagatacaacattctcaaagatgataagattgaaagatttggtaacatgccagtaatttgattattt |
561 |
Q |
| |
|
||| |||||||||||| ||||||||| ||||||||||||| |||||||||||| | |||||||| | |||||| ||| | ||| | ||||||| |
|
|
| T |
174597 |
agtgtgtatttctccaattaatttattatcagcaagatacaactgtctcaaagatgagagaattgaaaggtccggtaac-ggcccgaaatctcattattt |
174499 |
T |
|
| Q |
562 |
gataaggataattcctgtaacgaggatacatttccaatgcagttcgaatagtta |
615 |
Q |
| |
|
||||| ||| |||||||| || |||| |||| ||||||||| ||||||||| |
|
|
| T |
174498 |
gataaatctaaatcctgtaaggatgatagattttcaatgcagtgggaatagtta |
174445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 4e-47; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 18 - 602
Target Start/End: Complemental strand, 26728874 - 26728290
Alignment:
| Q |
18 |
taaaaaagaaggaatgggaccttcaagttgatttacagccaaatgtattattggatgattggtaagattgagttccaaattaggaatcttgccagtgaga |
117 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||| | ||||| || | ||| || ||| ||||||||||||| || |||||| | ||| ||||| |
|
|
| T |
26728874 |
taaaaaagaaggaatggaaccttcgagttgatttgaactcaaatctagttcaagataatgggttagattgagttccatatctggaatcctaccactgaga |
26728775 |
T |
|
| Q |
118 |
ttgttgtttgaaatgtctaagtaagctagtgttttcaatttcccccaaaaccaagtaggtattggatctagattactgacatttgaaaggataagatagg |
217 |
Q |
| |
|
|||||||||||||||| || ||||||||| |||||| ||||||||||| ||||||| | | | ||||| |||||||||||| ||| | | |
|
|
| T |
26728774 |
ttgttgtttgaaatgttcaatagttctagtgtttgcaattttccccaaaaccattgaggtatttgcgccaaattacctacatttgaaagggaaagctcag |
26728675 |
T |
|
| Q |
218 |
ataaggagttttgtgtttgaagccagttaggaaatctataatttagatttcaagatgctagattcaaatttattaatttaaagggaggaacccaatcata |
317 |
Q |
| |
|
||||| |||||||||||| ||||| |||||||||||| |||| || || ||||| | |||| ||||| |||||| ||| ||||||||||||| || |
|
|
| T |
26728674 |
ataagtcgttttgtgtttggagccaattaggaaatctagaattcaggttgcaagacgttagacgcaaataacttaattgaaacggaggaacccaattatc |
26728575 |
T |
|
| Q |
318 |
actaaccttcacagtcagaaagttatgagacaaatatagatcttccaatttggagaggttagtgaaatgagattcagagatgacaccttcaaaaccgttt |
417 |
Q |
| |
|
||||| ||||||| ||| || || | |||||||| ||| ||| |||||| ||||||||||||||||| |||||||||| ||||||||||||| |||| |
|
|
| T |
26728574 |
actaatcttcacattcaacaaattgtaagacaaatctaggtctaccaattctgagaggttagtgaaatgggattcagagacgacaccttcaaaagagttt |
26728475 |
T |
|
| Q |
418 |
acgctcaaatccaaatactttgactccataattgatccaatgcttgtgggtatttctccaaataatttatttctagcaagatacaacattctcaaagatg |
517 |
Q |
| |
|
|| | || |||||| || | | ||| ||| |||||| ||||||| |||||||||||| |||| ||||| | | |||| ||||| ||||||||||| |
|
|
| T |
26728474 |
actcccaggtccaaaatctctaaatccgtaagtgatcccatgcttgcaggtatttctccacataacttattgccattaagagacaaccgtctcaaagatg |
26728375 |
T |
|
| Q |
518 |
ataagattgaaagatttggtaacatgccagtaatttgattatttgataaggataattcctgtaacgaggatacatttccaatgca |
602 |
Q |
| |
|
| | |||||||| | ||||||| || | |||| ||| |||||||| |||| | ||||| |||||||||||||||||||| |
|
|
| T |
26728374 |
agaggattgaaaagtcgggtaacaaacctgaaattgtattgtttgataaccataacacttgtaaagaggatacatttccaatgca |
26728290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 831 - 948
Target Start/End: Complemental strand, 8341985 - 8341868
Alignment:
| Q |
831 |
tgagagattcccaagttgagaaggaatcttcccatcataaccactatttgagagatcaatgtatcgcaagttgctgaaggagccaataaattttgggatt |
930 |
Q |
| |
|
|||||||||||||||||||| ||||||||| || |||||||||| ||||||||||||| |||||| ||||||||||| || |||||||||||||| ||| |
|
|
| T |
8341985 |
tgagagattcccaagttgagtaggaatctttccctcataaccaccgtttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatt |
8341886 |
T |
|
| Q |
931 |
tgaccactagtattcaaa |
948 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
8341885 |
tgaccactagtattcaaa |
8341868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 457 - 721
Target Start/End: Complemental strand, 8342770 - 8342506
Alignment:
| Q |
457 |
atgcttgtgggtatttctccaaataatttatttctagcaagatacaacattctcaaagatgataagattgaaagatttggtaacatgccagtaatttgat |
556 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||| | |||| ||| ||||||||||||| || |||||| | ||||||||||| | |||||||| |
|
|
| T |
8342770 |
atgctcgtgggtatttctccaattaatttatttccatcaagtatcaattccctcaaagatgataggactgaaaggtcaggtaacatgcccgaaatttgat |
8342671 |
T |
|
| Q |
557 |
tatttgataaggataattcctgtaacgaggatacatttccaatgcagttcgaatagttattatgaactgtaaagtatgaaatatctccgcttaagcggtt |
656 |
Q |
| |
|
||| |||||||||| ||||||| ||||||||||||||| ||||| | || ||||||||||| | || | |||||| |||||||| ||| |||| |
|
|
| T |
8342670 |
tatacgataaggatagctcctgtagcgaggatacatttccgatgcaatgagagtagttattatggatgatagaacctgaaatttctccgctcaagtggtt |
8342571 |
T |
|
| Q |
657 |
atcattagcccaaaagctcttcaatgtacatatgttcccaatagatgtagggatcttgccttcta |
721 |
Q |
| |
|
|||| ||| ||| |||| ||| || ||||| |||||||| ||| | ||||| |||||||||| |
|
|
| T |
8342570 |
atcaaaagcttcaaatctctccaaggtgcatatattcccaatggattttgggatattgccttcta |
8342506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 780 - 1001
Target Start/End: Complemental strand, 26727632 - 26727409
Alignment:
| Q |
780 |
agggattgatccaatgagttgattgccgctgagatcaaggaatcgcaacgatgagagattcccaagttgagaaggaatcttcccatcataaccactattt |
879 |
Q |
| |
|
||||||| ||||||||||| |||| ||||||||||||| | ||||| |||||| || ||||||||||||||||||||| ||| | || |||| |
|
|
| T |
26727632 |
agggattcctccaatgagttcattgtggctgagatcaaggtgttgcaactgtgagagttttccaagttgagaaggaatcttctcattaaaaaaggcattt |
26727533 |
T |
|
| Q |
880 |
gagagatcaatgtatcgcaagttgctgaaggagccaataaattttgggatttgaccactagtattcaa-aaaccaaggtctaaatacgtaagatgttgc- |
977 |
Q |
| |
|
||||||| || |||||| || ||| |||||||||||||||| |||||||| ||||| ||| | |||| ||| |||||||| ||| || ||||||||| |
|
|
| T |
26727532 |
gagagattaaggtatcgtaaattgatgaaggagccaataaaatttgggatatgacctctaatcatcaatgaactaaggtctagatatgttagatgttgca |
26727433 |
T |
|
| Q |
978 |
attcagttattaaagggttgattt |
1001 |
Q |
| |
|
| ||||||||| |||| ||||||| |
|
|
| T |
26727432 |
actcagttattgaaggattgattt |
26727409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 291 - 411
Target Start/End: Complemental strand, 8343083 - 8342963
Alignment:
| Q |
291 |
taatttaaagggaggaacccaatcataactaaccttcacagtcagaaagttatgagacaaatatagatcttccaatttggagaggttagtgaaatgagat |
390 |
Q |
| |
|
||||| ||| ||||||||||||| | ||||||||||||| || ||||||| |||||| | ||| |||| |||||| |||||||| |||||||||||| |
|
|
| T |
8343083 |
taattgaaaaggaggaacccaattagtactaaccttcacaaacaataagttatcagacaactgtagttctttcaattttgagaggtttgtgaaatgagat |
8342984 |
T |
|
| Q |
391 |
tcagagatgacaccttcaaaa |
411 |
Q |
| |
|
||||||| |||||| |||||| |
|
|
| T |
8342983 |
tcagagacgacaccatcaaaa |
8342963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 9e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 780 - 948
Target Start/End: Original strand, 29228566 - 29228734
Alignment:
| Q |
780 |
agggattgatccaatgagttgattgccgctgagatcaaggaatcgcaacgatgagagattcccaagttgagaaggaatcttcccatcataaccactattt |
879 |
Q |
| |
|
|||||||| ||||||||||| |||| ||| ||||||||| | |||| ||||||||| |||||||||||||||||||||||||||||| || || |
|
|
| T |
29228566 |
agggattgctccaatgagttcattgttgctaagatcaaggtgttgcaattgtgagagatttccaagttgagaaggaatcttcccatcataatgacctgtt |
29228665 |
T |
|
| Q |
880 |
gagagatcaatgtatcgcaagttgctgaaggagccaataaattttgggatttgaccactagtattcaaa |
948 |
Q |
| |
|
||||||| | |||| | || ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29228666 |
gagagattgaggtattgtaacttgctgaaggagccaataaattttgggatttgaccactagtatgcaaa |
29228734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 780 - 948
Target Start/End: Original strand, 29341865 - 29342033
Alignment:
| Q |
780 |
agggattgatccaatgagttgattgccgctgagatcaaggaatcgcaacgatgagagattcccaagttgagaaggaatcttcccatcataaccactattt |
879 |
Q |
| |
|
|||||||| ||||||||||| |||| ||| ||||||||| | |||| ||||||||| |||||||||||||||||||||||||||||| || || |
|
|
| T |
29341865 |
agggattgctccaatgagttcattgttgctaagatcaaggtgttgcaattgtgagagatttccaagttgagaaggaatcttcccatcataatgacctgtt |
29341964 |
T |
|
| Q |
880 |
gagagatcaatgtatcgcaagttgctgaaggagccaataaattttgggatttgaccactagtattcaaa |
948 |
Q |
| |
|
||||||| | |||| | || ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29341965 |
gagagattgaggtattgtaacttgctgaaggagccaataaattttgggatttgaccactagtatgcaaa |
29342033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 236 - 406
Target Start/End: Original strand, 29507186 - 29507356
Alignment:
| Q |
236 |
gaagccagttaggaaatctataatttagatttcaagatgctagattcaaatttattaatttaaagggaggaacccaatcataactaaccttcacagtcag |
335 |
Q |
| |
|
||||||| |||||||| || | || ||||| ||||||||||| ||||| | |||||| ||| || |||||||||||| ||||||||||||||||| |
|
|
| T |
29507186 |
gaagccaattaggaaaggtagagttgagattacaagatgctagtaacaaatattttaattgaaaaggcggaacccaatcagtactaaccttcacagtcaa |
29507285 |
T |
|
| Q |
336 |
aaagttatgagacaaatatagatcttccaatttggagaggttagtgaaatgagattcagagatgacacctt |
406 |
Q |
| |
|
| |||| |||||| | ||| || |||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
29507286 |
caggttagaagacaactgtaggcctagtaatttggagaagttagtgaaatgagattcagagaggacacctt |
29507356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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