View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4520-Insertion-3 (Length: 998)
Name: NF4520-Insertion-3
Description: NF4520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4520-Insertion-3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 686; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 686; E-Value: 0
Query Start/End: Original strand, 8 - 943
Target Start/End: Complemental strand, 21036484 - 21035527
Alignment:
| Q |
8 |
aatgtcacaggatctttcatcaaatcaagtgtaataggacacctaaattgatttggaaccactacctccatgtttggttttccacctttgttgtttttct |
107 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21036484 |
aatgtcacaggatctttcatcaattcaagtgtaataggacacctaaattgatttggaaccactacctccatgtttggttttccacctttgttgtttttct |
21036385 |
T |
|
| Q |
108 |
tgttcttccttcttccccaacctaacaccatcttaaaagcttttctaagagaatttaacaaccttaattatcaaaga--acgaccttacttgaagaggat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
21036384 |
tgttcttccttcttccccaacctaacaccatcttaaaagcttttctaagataatttaacaaccttaattatcaaagataacgaccttacttgaacaggat |
21036285 |
T |
|
| Q |
206 |
ctgctctataggatcgtactactgtgtccttgatttctaag-agacagaaacnnnnnnnnntattatcaaagaaaccaaaaagaaactatatttcttatt |
304 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||| |||| ||| ||||| |
|
|
| T |
21036284 |
ctgttctataggatcgtactactgtgtccttgatttctaaggaaacagaaacaaaaaacaatattatcaaagaaaccaaaaagaagctatttttgttatt |
21036185 |
T |
|
| Q |
305 |
gatcaagttttaaatgaaggtannnnnnnnnnnnnnnnnnnnnnnnctgttgatcaagtttgaatctttggttgagaatattaatggattttgcaagtgg |
404 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
21036184 |
gatcaagttttaaatgaaggtatttttgtttttaggatacttttttctgttgatcaagtttgaatctttggttgaaaatattaatggattttgcaagtgg |
21036085 |
T |
|
| Q |
405 |
gtatgttcatgtatttatatatagaaatagtctatagtatgtatatata--gagacnnnnnnnnncacaaaagaaacacgtaaaataatata-------- |
494 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
21036084 |
gtatgttcatgtatttatatatagaaatagtctatagtatgtatatatatagagacaaaaaaaa-cacaaaagaaacacgtaaaataatatattttaacg |
21035986 |
T |
|
| Q |
495 |
--------gtttatgaggtttttgttactattgacttgtagggtcaatattgttttcacacaaagagagtttcaacttcaaaaggttggaccctataagg |
586 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21035985 |
tgtcatgtgtttatgaggtttttgttactattgacttgtagggtcaatgttgttttcatacaaagagagtttcaacttcaaaaggttggaccctataagg |
21035886 |
T |
|
| Q |
587 |
aattattctaatgagaaacattcaaaattgaagagagagaatgatgtttgtatagttttgtataaaagaggagttatgatttgaatattgaccattgaag |
686 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21035885 |
aattattctaatgagaaacattcaaaattgaagagagagaatgatgtttgtatagttttgtataaaagaggagttatgatttgaatattgaccattgaag |
21035786 |
T |
|
| Q |
687 |
atttttgaggaaaattgagaacacctctagcagtcaaagggaggaattggtaaaccatcaaatggcttaaggtaattgtaatggacgtttgggattttga |
786 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21035785 |
atttttgaggaaaattgagaacacctctagcagtcaaagggaggaattggtaaaccatcaaatggcttaaggtaattgtaatggacgtttgggattttga |
21035686 |
T |
|
| Q |
787 |
tgaggtatatgcaacacatctccaccgttgagttgagatttgattaagattggttaattttgtatgtcgaaatttatttatcttaaatataatttggtaa |
886 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21035685 |
tgaggtatatgcaacacatctccaccgttgagttgagatttgattaagattggttaattttgtatgtcgaaatttatttatcttaaatataatttggtaa |
21035586 |
T |
|
| Q |
887 |
actcgaaatataagtcatttaaaacattattaatttagtgtttgaa--attattaatat |
943 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
21035585 |
actcgaaatataagtcatttgaaacattattaatttagtgtttgaaacattattaatat |
21035527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 10101155 - 10101094
Alignment:
| Q |
185 |
acgaccttacttgaagaggatctgctctataggatcgtactactgtgtccttgatttctaag |
246 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10101155 |
acgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaag |
10101094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 9678700 - 9678757
Alignment:
| Q |
185 |
acgaccttacttgaagaggatctgctctataggatcgtactactgtgtccttgatttc |
242 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9678700 |
acgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttc |
9678757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 10214391 - 10214452
Alignment:
| Q |
185 |
acgaccttacttgaagaggatctgctctataggatcgtactactgtgtccttgatttctaag |
246 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10214391 |
acgaccttacttgaacaggatctgttctataggattgtactactgtgtccttgatttctaag |
10214452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 10104958 - 10104896
Alignment:
| Q |
185 |
acgaccttacttgaagaggatctgctctataggatcgtactactgtgtccttgatttctaaga |
247 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10104958 |
acgaccttacttgaacaggatctgttctataggattatactactgtgtccttgatttctaaga |
10104896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 20982899 - 20982839
Alignment:
| Q |
185 |
acgaccttacttgaagaggatctgctctataggatcgtactactgtgtccttgatttctaag |
246 |
Q |
| |
|
||||||||||| ||| |||||||| ||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
20982899 |
acgaccttact-gaacaggatctgatctataggatcgtactattgtatccttgatttctaag |
20982839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 908 - 949
Target Start/End: Complemental strand, 21035541 - 21035500
Alignment:
| Q |
908 |
aaacattattaatttagtgtttgaaattattaatatttaaaa |
949 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
21035541 |
aaacattattaatatagtgtttgaaattattaatatttaaaa |
21035500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 463; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 351 - 950
Target Start/End: Original strand, 26384653 - 26385277
Alignment:
| Q |
351 |
ctgttgatcaagtttgaatctttggttgagaatattaatggattttgcaagtgggtatgttcatgtatttatatatagaaatagtctatagtatgtatat |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26384653 |
ctgttgatcaagtttgaatctttggttgagaatattaatggattttgcaagtgggtatgttcatgtatttatatatagaaatagtctatagtatgtatat |
26384752 |
T |
|
| Q |
451 |
ataga--gacnnnnnnnnn-cacaaaagaaacacgtaaaataatata----------------gtttatgaggtttttgttactattgacttgtagggtc |
531 |
Q |
| |
|
||| | ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26384753 |
atataaagacaaaaaaaaaacacaaaagaaacacgtaaaataatatattttaatgtgtcatgtgtttatgaggtttttgttactattgacttgtagggtc |
26384852 |
T |
|
| Q |
532 |
aata--------ttgttttcacacaaagagagtttcaacttcaaaaggttggaccctataaggaattattctaatgagaaacattcaaaattgaagagag |
623 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26384853 |
aataactcaatattgttttcatacaaagagagtttcaacttcaaa-ggttggaccctataaggaattattctaatgagaaacattcaaaattgaagagag |
26384951 |
T |
|
| Q |
624 |
agaatgatgtttgtatagttttgtataaaagaggagttatgatttgaatattgaccattgaagatttttgaggaaaattgagaacacctctagcagtcaa |
723 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26384952 |
agaatgatgtttgtatagttttgtataaaagaggagttatgatttgaatattgaccattgaagatttttgaggaaaattgagaacacctctagcagtcaa |
26385051 |
T |
|
| Q |
724 |
agggaggaattggtaaaccatcaaatggcttaaggtaattgtaatggacgtttgggattttgatgaggtatatgcaacacatctccaccgttgagttgag |
823 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26385052 |
agggaggaattggtaaac-atcagatggcttaaggtaattgtaatggacgtttgggattttgatgaggtatattcaacacatctccaccgttgagttgag |
26385150 |
T |
|
| Q |
824 |
atttgattaagattggttaattttgtatgtcgaaatttatttatcttaaatataatttggtaaactcgaaatataagtcatttaaaacattattaattta |
923 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26385151 |
atttgattaagattggtttattttgtatgtcgaaatttatttatcttaaatataatttggtaaactcgaaatataagtcatttaaaacattattaattta |
26385250 |
T |
|
| Q |
924 |
gtgtttgaaattattaatatttaaaat |
950 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
26385251 |
gtgtttgaaattattaatatttaaaat |
26385277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 150; E-Value: 9e-79
Query Start/End: Original strand, 8 - 314
Target Start/End: Original strand, 26384260 - 26384549
Alignment:
| Q |
8 |
aatgtcacaggatctttcatcaaatcaagtgtaataggacacctaaattgatttggaaccactacctccatgtttggttttccacctttgttg-tttttc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26384260 |
aatgtcacaggatctttcatcaaatcaagagttataggacacctaaattgatttggaaccactacctccatgtttggttttccacctttgttgttttttg |
26384359 |
T |
|
| Q |
107 |
ttgttcttccttcttccccaacctaacaccatcttaaaagcttttctaagagaatttaacaaccttaattatcaaagaacgaccttacttgaagaggatc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||| ||||||||||| |||||| |
|
|
| T |
26384360 |
ttgttcttccttcttccccaacctaacaccatcttaaacacttttgtaagagaaattaacaa--------------------ccttacttgaacaggatc |
26384439 |
T |
|
| Q |
207 |
tgctctataggatcgtactactgtgtccttgatttctaa-gagacagaaac-nnnnnnnnntattatcaaagaaaccaaaaagaaactatatttcttatt |
304 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
26384440 |
tgttctataggatcgtactactgtgtccttgatttctaaggagacagaaacaaaaaaaatatattatcaaagaaaccaaaaagaagctatatttgttatt |
26384539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 236
Target Start/End: Original strand, 22366692 - 22366743
Alignment:
| Q |
185 |
acgaccttacttgaagaggatctgctctataggatcgtactactgtgtcctt |
236 |
Q |
| |
|
||||||||| ||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
22366692 |
acgaccttatttgaacaggatctgttctataggatcgtactactgtgtcctt |
22366743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 2e-21; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 33032796 - 33032735
Alignment:
| Q |
185 |
acgaccttacttgaagaggatctgctctataggatcgtactactgtgtccttgatttctaag |
246 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33032796 |
acgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaag |
33032735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 33120356 - 33120295
Alignment:
| Q |
185 |
acgaccttacttgaagaggatctgctctataggatcgtactactgtgtccttgatttctaag |
246 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33120356 |
acgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaag |
33120295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 34906312 - 34906373
Alignment:
| Q |
185 |
acgaccttacttgaagaggatctgctctataggatcgtactactgtgtccttgatttctaag |
246 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34906312 |
acgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaag |
34906373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 34914013 - 34913952
Alignment:
| Q |
185 |
acgaccttacttgaagaggatctgctctataggatcgtactactgtgtccttgatttctaag |
246 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34914013 |
acgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaag |
34913952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 184 - 246
Target Start/End: Complemental strand, 1470720 - 1470658
Alignment:
| Q |
184 |
aacgaccttacttgaagaggatctgctctataggatcgtactactgtgtccttgatttctaag |
246 |
Q |
| |
|
|||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1470720 |
aacgaccttacttgaacatgatctattctataggatcgtactactgtgtccttgatttctaag |
1470658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 35702429 - 35702477
Alignment:
| Q |
185 |
acgaccttacttgaagaggatctgctctataggatcgtactactgtgtc |
233 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||| ||||||||||||| |
|
|
| T |
35702429 |
acgaccttacttgaacaggatctgttctataggatggtactactgtgtc |
35702477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 41108233 - 41108172
Alignment:
| Q |
185 |
acgaccttacttgaagaggatctgctctataggatcgtactactgtgtccttgatttctaag |
246 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41108233 |
acgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaag |
41108172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 245
Target Start/End: Original strand, 5130615 - 5130675
Alignment:
| Q |
185 |
acgaccttacttgaagaggatctgctctataggatcgtactactgtgtccttgatttctaa |
245 |
Q |
| |
|
||||||||||||||| | ||||| | |||||||||||| ||||||||||||||||||||| |
|
|
| T |
5130615 |
acgaccttacttgaacaagatctcttttataggatcgtattactgtgtccttgatttctaa |
5130675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 245
Target Start/End: Complemental strand, 1086970 - 1086910
Alignment:
| Q |
185 |
acgaccttacttgaagaggatctgctctataggatcgtactactgtgtccttgatttctaa |
245 |
Q |
| |
|
||||||||||||||| | ||||| | |||| |||||||||| |||||||||||||||||| |
|
|
| T |
1086970 |
acgaccttacttgaacaagatctattttataagatcgtactattgtgtccttgatttctaa |
1086910 |
T |
|
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