View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4520-Insertion-4 (Length: 706)

Name: NF4520-Insertion-4
Description: NF4520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4520-Insertion-4
NF4520-Insertion-4
[»] chr5 (8 HSPs)
chr5 (53-691)||(18986155-18986791)
chr5 (306-347)||(21633523-21633564)
chr5 (306-347)||(21641770-21641811)
chr5 (314-347)||(30330706-30330739)
chr5 (292-341)||(38658495-38658544)
chr5 (314-347)||(40169055-40169088)
chr5 (314-354)||(30770078-30770118)
chr5 (314-346)||(34457361-34457393)
[»] chr7 (8 HSPs)
chr7 (314-355)||(4454790-4454831)
chr7 (312-355)||(1596842-1596885)
chr7 (314-347)||(9379057-9379090)
chr7 (318-355)||(29469619-29469656)
chr7 (318-355)||(29469854-29469891)
chr7 (306-355)||(30727139-30727188)
chr7 (318-355)||(40898748-40898785)
chr7 (488-524)||(43791021-43791057)
[»] chr4 (8 HSPs)
chr4 (318-355)||(31254440-31254477)
chr4 (306-355)||(24231864-24231914)
chr4 (314-355)||(17222681-17222722)
chr4 (318-355)||(20821987-20822024)
chr4 (489-542)||(24001553-24001605)
chr4 (314-355)||(27634110-27634151)
chr4 (306-347)||(35399263-35399304)
chr4 (306-347)||(35399422-35399463)
[»] chr2 (7 HSPs)
chr2 (306-347)||(33456018-33456059)
chr2 (314-355)||(93152-93193)
chr2 (306-347)||(884114-884155)
chr2 (314-347)||(3435500-3435533)
chr2 (314-347)||(27545130-27545163)
chr2 (306-347)||(29684068-29684109)
chr2 (486-526)||(26237144-26237184)
[»] chr8 (8 HSPs)
chr8 (311-355)||(6559475-6559519)
chr8 (312-355)||(45031388-45031431)
chr8 (314-355)||(7729955-7729996)
chr8 (318-355)||(11232227-11232264)
chr8 (318-355)||(11232462-11232499)
chr8 (314-347)||(20760674-20760707)
chr8 (306-347)||(40902399-40902440)
chr8 (490-577)||(45031337-45031421)
[»] chr6 (5 HSPs)
chr6 (310-354)||(13211875-13211919)
chr6 (318-355)||(13353215-13353252)
chr6 (318-355)||(19712966-19713003)
chr6 (318-355)||(33796340-33796377)
chr6 (318-354)||(6623443-6623479)
[»] chr3 (4 HSPs)
chr3 (307-355)||(50070218-50070266)
chr3 (318-355)||(1800229-1800266)
chr3 (318-355)||(20303097-20303134)
chr3 (306-347)||(40230645-40230686)
[»] chr1 (5 HSPs)
chr1 (312-355)||(11924935-11924978)
chr1 (522-579)||(40571584-40571638)
chr1 (314-347)||(21538948-21538981)
chr1 (318-355)||(39348385-39348422)
chr1 (314-342)||(38076374-38076402)
[»] scaffold0519 (2 HSPs)
scaffold0519 (318-355)||(1930-1967)
scaffold0519 (318-355)||(2165-2202)
[»] scaffold0060 (1 HSPs)
scaffold0060 (306-347)||(13638-13679)
[»] scaffold0041 (1 HSPs)
scaffold0041 (318-355)||(67499-67536)


Alignment Details
Target: chr5 (Bit Score: 552; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 53 - 691
Target Start/End: Complemental strand, 18986791 - 18986155
Alignment:
Q  53 ttgatgtacgtgtttggattgatagtgaaatgaaaagaatcatggcgagccaccatggttttgataaaaactacacgttgaagctccacaaaatcacacg 152  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18986791 ttgatgtacgtgtttggattgacagtgaaatgaaaagaatcatggcgagccaccatggttttgataaaaactacacgttgaagctccacaaaatcacacg 18986692  T
Q  153 tgtgattttgtcaaactcaccaccaatctacacctacactaagtttgacaaatattaattaataacacactaaaaccaaaaataataaggatcaaaaagt 252  Q
    ||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||| |||||||  ||||||||||||||||||||||||||||||    
T  18986691 tgtgattttgtcaaactcaccaccaatctacacatacactaagttcaacaaatattaattcataacac--taaaaccaaaaataataaggatcaaaaagt 18986594  T
Q  253 aaatttttcatgtttcaaattaaaagcaacaagaatttgttttatgttggaagtaacttaaccttacaaaaccggtttgtaaggtgagaattgcccccac 352  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||| ||||| |||||||||||||| |||    
T  18986593 aaatttttcatgtttcaaattaaaagcaacaagaatttgttttaggttggacgtaacttacccttacaaaaccggcttgtagggtgagaattgccctcac 18986494  T
Q  353 ttacattgctcaacctttacctcttccaatgtaaaactcttaagtctcttaacacatacccctaacgcccaagactaggcatctggagcatgacccgtca 452  Q
    ||| |||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  18986493 ttatattattcaacctttatctcttccaatgtaaaactcttaagtctcttaacacatacccctaatgcccaagactaggcatctggagcatgacccgtcg 18986394  T
Q  453 agtggcctgatagtggcgacctaatagcaggtgatggatcttggatagactctgatactatattaagcttttgggttgggcctaactcaaaaaccttacc 552  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18986393 agtggcctgatagtggcgacctaatagtaggtgatggatcttggatagactctgatactatattaagcttttgggttgggcctaactcaaaaaccttacc 18986294  T
Q  553 aaactaacttgtaaggtgaggattgtcttcacatataatgtttagaccttatctctttcaatgtgggacttttaacaaaagtgtgtattacaaggactaa 652  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18986293 aaactaacttgtaaggtgatgattgtcttcacatataatgtttagaccttatctctttcaatgtgggacttttaacaaaagtgtgtattacaaggactaa 18986194  T
Q  653 agagttttagatcttgtagtacaatatatccaaatcagg 691  Q
    |||||||||||||||||||||||||||||||||||||||    
T  18986193 agagttttagatcttgtagtacaatatatccaaatcagg 18986155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 21633523 - 21633564
Alignment:
Q  306 taacttaaccttacaaaaccggtttgtaaggtgagaattgcc 347  Q
    ||||| ||||||||||||||||||||||||||||| ||||||    
T  21633523 taactcaaccttacaaaaccggtttgtaaggtgaggattgcc 21633564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 21641770 - 21641811
Alignment:
Q  306 taacttaaccttacaaaaccggtttgtaaggtgagaattgcc 347  Q
    ||||| ||||||||||||||||||||||||||||| ||||||    
T  21641770 taactcaaccttacaaaaccggtttgtaaggtgaggattgcc 21641811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 314 - 347
Target Start/End: Complemental strand, 30330739 - 30330706
Alignment:
Q  314 ccttacaaaaccggtttgtaaggtgagaattgcc 347  Q
    ||||||||||||||||||||||||||| ||||||    
T  30330739 ccttacaaaaccggtttgtaaggtgaggattgcc 30330706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 292 - 341
Target Start/End: Original strand, 38658495 - 38658544
Alignment:
Q  292 ttttatgttggaagtaacttaaccttacaaaaccggtttgtaaggtgaga 341  Q
    |||||| |||| | ||||| | ||||||||||||||||||||||||||||    
T  38658495 ttttatattgggactaactcatccttacaaaaccggtttgtaaggtgaga 38658544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 314 - 347
Target Start/End: Original strand, 40169055 - 40169088
Alignment:
Q  314 ccttacaaaaccggtttgtaaggtgagaattgcc 347  Q
    |||||||||||||| |||||||||||||||||||    
T  40169055 ccttacaaaaccggcttgtaaggtgagaattgcc 40169088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 314 - 354
Target Start/End: Original strand, 30770078 - 30770118
Alignment:
Q  314 ccttacaaaaccggtttgtaaggtgagaattgcccccactt 354  Q
    ||||||||||||||||| | ||||||| |||||||||||||    
T  30770078 ccttacaaaaccggtttatgaggtgaggattgcccccactt 30770118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 314 - 346
Target Start/End: Complemental strand, 34457393 - 34457361
Alignment:
Q  314 ccttacaaaaccggtttgtaaggtgagaattgc 346  Q
    |||||||||||||| ||||||||||||||||||    
T  34457393 ccttacaaaaccggcttgtaaggtgagaattgc 34457361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 314 - 355
Target Start/End: Complemental strand, 4454831 - 4454790
Alignment:
Q  314 ccttacaaaaccggtttgtaaggtgagaattgcccccactta 355  Q
    ||||||||||||||||||| ||||||| ||||||||||||||    
T  4454831 ccttacaaaaccggtttgtgaggtgaggattgcccccactta 4454790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 312 - 355
Target Start/End: Complemental strand, 1596885 - 1596842
Alignment:
Q  312 aaccttacaaaaccggtttgtaaggtgagaattgcccccactta 355  Q
    |||| ||||||||||| |||||||||||| ||||||||||||||    
T  1596885 aaccctacaaaaccggcttgtaaggtgaggattgcccccactta 1596842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 314 - 347
Target Start/End: Complemental strand, 9379090 - 9379057
Alignment:
Q  314 ccttacaaaaccggtttgtaaggtgagaattgcc 347  Q
    ||||||||||||||||||||||||||| ||||||    
T  9379090 ccttacaaaaccggtttgtaaggtgaggattgcc 9379057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 355
Target Start/End: Complemental strand, 29469656 - 29469619
Alignment:
Q  318 acaaaaccggtttgtaaggtgagaattgcccccactta 355  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  29469656 acaaaaccggcttgtaaggtgaggattgcccccactta 29469619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 355
Target Start/End: Complemental strand, 29469891 - 29469854
Alignment:
Q  318 acaaaaccggtttgtaaggtgagaattgcccccactta 355  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  29469891 acaaaaccggcttgtaaggtgaggattgcccccactta 29469854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 306 - 355
Target Start/End: Original strand, 30727139 - 30727188
Alignment:
Q  306 taacttaaccttacaaaaccggtttgtaaggtgagaattgcccccactta 355  Q
    |||||||||| ||||||||| | |||| ||||||| ||||||||||||||    
T  30727139 taacttaaccgtacaaaaccagcttgtgaggtgaggattgcccccactta 30727188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 355
Target Start/End: Original strand, 40898748 - 40898785
Alignment:
Q  318 acaaaaccggtttgtaaggtgagaattgcccccactta 355  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  40898748 acaaaatcggtttgtaaggtgaggattgcccccactta 40898785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 488 - 524
Target Start/End: Original strand, 43791021 - 43791057
Alignment:
Q  488 ggatcttggatagactctgatactatattaagctttt 524  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  43791021 ggatcttggatagactctaatactatattaagttttt 43791057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 318 - 355
Target Start/End: Original strand, 31254440 - 31254477
Alignment:
Q  318 acaaaaccggtttgtaaggtgagaattgcccccactta 355  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  31254440 acaaaaccggtttgtaaggtgaggattgcccccactta 31254477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 306 - 355
Target Start/End: Original strand, 24231864 - 24231914
Alignment:
Q  306 taacttaacc-ttacaaaaccggtttgtaaggtgagaattgcccccactta 355  Q
    |||||||||| |||||||||||| ||||| |||||||| ||||||||||||    
T  24231864 taacttaacccttacaaaaccggcttgtatggtgagaactgcccccactta 24231914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 314 - 355
Target Start/End: Original strand, 17222681 - 17222722
Alignment:
Q  314 ccttacaaaaccggtttgtaaggtgagaattgcccccactta 355  Q
    |||||||||||||| |||| ||||||| ||||||||||||||    
T  17222681 ccttacaaaaccggcttgtgaggtgaggattgcccccactta 17222722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 355
Target Start/End: Complemental strand, 20822024 - 20821987
Alignment:
Q  318 acaaaaccggtttgtaaggtgagaattgcccccactta 355  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  20822024 acaaaaccggcttgtgaggtgagaattgcccccactta 20821987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 489 - 542
Target Start/End: Complemental strand, 24001605 - 24001553
Alignment:
Q  489 gatcttggatagactctgatactatattaagcttttgggttgggcctaactcaa 542  Q
    ||||||||||||||||||||||||| || ||  |||||||||||| ||||||||    
T  24001605 gatcttggatagactctgatactatctt-agaatttgggttgggcttaactcaa 24001553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 314 - 355
Target Start/End: Original strand, 27634110 - 27634151
Alignment:
Q  314 ccttacaaaaccggtttgtaaggtgagaattgcccccactta 355  Q
    |||||||||| |||||||| ||||||| ||||||||||||||    
T  27634110 ccttacaaaatcggtttgtgaggtgaggattgcccccactta 27634151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 35399263 - 35399304
Alignment:
Q  306 taacttaaccttacaaaaccggtttgtaaggtgagaattgcc 347  Q
    ||||| |||||||||||||||| |||||||||||| ||||||    
T  35399263 taactcaaccttacaaaaccggcttgtaaggtgaggattgcc 35399304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 35399422 - 35399463
Alignment:
Q  306 taacttaaccttacaaaaccggtttgtaaggtgagaattgcc 347  Q
    ||||| |||||||||||||||| |||||||||||| ||||||    
T  35399422 taactcaaccttacaaaaccggcttgtaaggtgaggattgcc 35399463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 33456059 - 33456018
Alignment:
Q  306 taacttaaccttacaaaaccggtttgtaaggtgagaattgcc 347  Q
    ||||| ||||||||||||||||||||||||||||| ||||||    
T  33456059 taactcaaccttacaaaaccggtttgtaaggtgaggattgcc 33456018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 314 - 355
Target Start/End: Original strand, 93152 - 93193
Alignment:
Q  314 ccttacaaaaccggtttgtaaggtgagaattgcccccactta 355  Q
    |||||||||||||| |||||||||||| | ||||||||||||    
T  93152 ccttacaaaaccggcttgtaaggtgaggagtgcccccactta 93193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 884155 - 884114
Alignment:
Q  306 taacttaaccttacaaaaccggtttgtaaggtgagaattgcc 347  Q
    ||||| |||||||||||||||| |||||||||||| ||||||    
T  884155 taactcaaccttacaaaaccggcttgtaaggtgaggattgcc 884114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 314 - 347
Target Start/End: Original strand, 3435500 - 3435533
Alignment:
Q  314 ccttacaaaaccggtttgtaaggtgagaattgcc 347  Q
    ||||||||||||||||||||||||||| ||||||    
T  3435500 ccttacaaaaccggtttgtaaggtgaggattgcc 3435533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 314 - 347
Target Start/End: Original strand, 27545130 - 27545163
Alignment:
Q  314 ccttacaaaaccggtttgtaaggtgagaattgcc 347  Q
    ||||||||||||||||||||||||||| ||||||    
T  27545130 ccttacaaaaccggtttgtaaggtgaggattgcc 27545163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 29684109 - 29684068
Alignment:
Q  306 taacttaaccttacaaaaccggtttgtaaggtgagaattgcc 347  Q
    ||||||| |||||||||||||| |||||||||||| ||||||    
T  29684109 taacttatccttacaaaaccggcttgtaaggtgaggattgcc 29684068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 486 - 526
Target Start/End: Complemental strand, 26237184 - 26237144
Alignment:
Q  486 atggatcttggatagactctgatactatattaagcttttgg 526  Q
    ||||||||||||||||||||||||| || |||| |||||||    
T  26237184 atggatcttggatagactctgataccatcttaaacttttgg 26237144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 311 - 355
Target Start/End: Original strand, 6559475 - 6559519
Alignment:
Q  311 taaccttacaaaaccggtttgtaaggtgagaattgcccccactta 355  Q
    |||||| |||||||||| |||||||||||| ||||||||||||||    
T  6559475 taacctcacaaaaccggcttgtaaggtgaggattgcccccactta 6559519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 312 - 355
Target Start/End: Original strand, 45031388 - 45031431
Alignment:
Q  312 aaccttacaaaaccggtttgtaaggtgagaattgcccccactta 355  Q
    |||||||||||||||| |||||||||||| |||||||| |||||    
T  45031388 aaccttacaaaaccggcttgtaaggtgaggattgccccgactta 45031431  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 314 - 355
Target Start/End: Complemental strand, 7729996 - 7729955
Alignment:
Q  314 ccttacaaaaccggtttgtaaggtgagaattgcccccactta 355  Q
    |||||||||||||| |||| ||||||| ||||||||||||||    
T  7729996 ccttacaaaaccggcttgtgaggtgaggattgcccccactta 7729955  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 355
Target Start/End: Original strand, 11232227 - 11232264
Alignment:
Q  318 acaaaaccggtttgtaaggtgagaattgcccccactta 355  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  11232227 acaaaaccggcttgtaaggtgaggattgcccccactta 11232264  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 355
Target Start/End: Original strand, 11232462 - 11232499
Alignment:
Q  318 acaaaaccggtttgtaaggtgagaattgcccccactta 355  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  11232462 acaaaaccggcttgtaaggtgaggattgcccccactta 11232499  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 314 - 347
Target Start/End: Original strand, 20760674 - 20760707
Alignment:
Q  314 ccttacaaaaccggtttgtaaggtgagaattgcc 347  Q
    ||||||||||||||||||||||||||| ||||||    
T  20760674 ccttacaaaaccggtttgtaaggtgaggattgcc 20760707  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 40902399 - 40902440
Alignment:
Q  306 taacttaaccttacaaaaccggtttgtaaggtgagaattgcc 347  Q
    ||||||| |||||||||||||| |||||||||||| ||||||    
T  40902399 taacttatccttacaaaaccggcttgtaaggtgaggattgcc 40902440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 490 - 577
Target Start/End: Original strand, 45031337 - 45031421
Alignment:
Q  490 atcttggatagactctgatactatattaagcttttgggttgggcctaactcaaaaaccttaccaaactaacttgtaaggtgaggattg 577  Q
    |||||||||||||||| || | || ||||  ||||||||||||||||||   | |||||||| ||||   ||||||||||||||||||    
T  45031337 atcttggatagactctaatcccatcttaaagttttgggttgggcctaac---acaaccttacaaaaccggcttgtaaggtgaggattg 45031421  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 310 - 354
Target Start/End: Original strand, 13211875 - 13211919
Alignment:
Q  310 ttaaccttacaaaaccggtttgtaaggtgagaattgcccccactt 354  Q
    ||||||||||||||||||  |||||||||||||||||| ||||||    
T  13211875 ttaaccttacaaaaccggcatgtaaggtgagaattgcctccactt 13211919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 355
Target Start/End: Complemental strand, 13353252 - 13353215
Alignment:
Q  318 acaaaaccggtttgtaaggtgagaattgcccccactta 355  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  13353252 acaaaaccggcttgtaaggtgaggattgcccccactta 13353215  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 355
Target Start/End: Complemental strand, 19713003 - 19712966
Alignment:
Q  318 acaaaaccggtttgtaaggtgagaattgcccccactta 355  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  19713003 acaaaaccggcttgtgaggtgagaattgcccccactta 19712966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 355
Target Start/End: Complemental strand, 33796377 - 33796340
Alignment:
Q  318 acaaaaccggtttgtaaggtgagaattgcccccactta 355  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  33796377 acaaaaccggcttgtaaggtgaggattgcccccactta 33796340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 6623443 - 6623479
Alignment:
Q  318 acaaaaccggtttgtaaggtgagaattgcccccactt 354  Q
    |||||||||| |||||||||||| |||||||||||||    
T  6623443 acaaaaccggcttgtaaggtgaggattgcccccactt 6623479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 307 - 355
Target Start/End: Complemental strand, 50070266 - 50070218
Alignment:
Q  307 aacttaaccttacaaaaccggtttgtaaggtgagaattgcccccactta 355  Q
    |||| |||| ||||||||| | |||||||||||||||||||||||||||    
T  50070266 aactcaaccctacaaaaccagcttgtaaggtgagaattgcccccactta 50070218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 355
Target Start/End: Complemental strand, 1800266 - 1800229
Alignment:
Q  318 acaaaaccggtttgtaaggtgagaattgcccccactta 355  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  1800266 acaaaaccggtttgtgaggtgaggattgcccccactta 1800229  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 355
Target Start/End: Original strand, 20303097 - 20303134
Alignment:
Q  318 acaaaaccggtttgtaaggtgagaattgcccccactta 355  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  20303097 acaaaaccggtttgtgaggtgaggattgcccccactta 20303134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 40230645 - 40230686
Alignment:
Q  306 taacttaaccttacaaaaccggtttgtaaggtgagaattgcc 347  Q
    ||||| |||||||||||||||| |||||||||||| ||||||    
T  40230645 taactcaaccttacaaaaccggcttgtaaggtgaggattgcc 40230686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 312 - 355
Target Start/End: Complemental strand, 11924978 - 11924935
Alignment:
Q  312 aaccttacaaaaccggtttgtaaggtgagaattgcccccactta 355  Q
    ||||| ||||||||||||||||||||||||| | ||||||||||    
T  11924978 aacctcacaaaaccggtttgtaaggtgagaaatacccccactta 11924935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 522 - 579
Target Start/End: Complemental strand, 40571638 - 40571584
Alignment:
Q  522 tttgggttgggcctaactcaaaaaccttaccaaactaacttgtaaggtgaggattgtc 579  Q
    ||||| |||||||||||||||   |||||| |||| ||||||||||||||||||||||    
T  40571638 tttggattgggcctaactcaa---ccttacaaaaccaacttgtaaggtgaggattgtc 40571584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 314 - 347
Target Start/End: Original strand, 21538948 - 21538981
Alignment:
Q  314 ccttacaaaaccggtttgtaaggtgagaattgcc 347  Q
    ||||||||||||||||||||||||||| ||||||    
T  21538948 ccttacaaaaccggtttgtaaggtgaggattgcc 21538981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 355
Target Start/End: Original strand, 39348385 - 39348422
Alignment:
Q  318 acaaaaccggtttgtaaggtgagaattgcccccactta 355  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  39348385 acaaaaccggtttgtgaggtgaggattgcccccactta 39348422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 314 - 342
Target Start/End: Complemental strand, 38076402 - 38076374
Alignment:
Q  314 ccttacaaaaccggtttgtaaggtgagaa 342  Q
    |||||||||||||||||||||||||||||    
T  38076402 ccttacaaaaccggtttgtaaggtgagaa 38076374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 355
Target Start/End: Complemental strand, 1967 - 1930
Alignment:
Q  318 acaaaaccggtttgtaaggtgagaattgcccccactta 355  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  1967 acaaaaccggcttgtaaggtgaggattgcccccactta 1930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 355
Target Start/End: Complemental strand, 2202 - 2165
Alignment:
Q  318 acaaaaccggtttgtaaggtgagaattgcccccactta 355  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  2202 acaaaaccggcttgtaaggtgaggattgcccccactta 2165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 13638 - 13679
Alignment:
Q  306 taacttaaccttacaaaaccggtttgtaaggtgagaattgcc 347  Q
    ||||| |||||||||||||||| |||||||||||| ||||||    
T  13638 taactcaaccttacaaaaccggcttgtaaggtgaggattgcc 13679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 355
Target Start/End: Complemental strand, 67536 - 67499
Alignment:
Q  318 acaaaaccggtttgtaaggtgagaattgcccccactta 355  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  67536 acaaaatcggtttgtaaggtgaggattgcccccactta 67499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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