View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4520-Insertion-9 (Length: 78)

Name: NF4520-Insertion-9
Description: NF4520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4520-Insertion-9
NF4520-Insertion-9
[»] chr3 (9 HSPs)
chr3 (8-78)||(27046749-27046819)
chr3 (8-69)||(27086883-27086944)
chr3 (8-73)||(27042731-27042796)
chr3 (15-51)||(27071633-27071669)
chr3 (11-51)||(27092429-27092469)
chr3 (13-51)||(27064664-27064702)
chr3 (11-51)||(27044694-27044734)
chr3 (9-48)||(27100390-27100429)
chr3 (9-48)||(27106897-27106936)


Alignment Details
Target: chr3 (Bit Score: 71; Significance: 8e-33; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 8e-33
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 27046819 - 27046749
Alignment:
Q  8 cattccttcttgtattctttctctgtctacacttgacaataaagacaacaattataacctttgtcaagctg 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27046819 cattccttcttgtattctttctctgtctacacttgacaataaagacaacaattataacctttgtcaagctg 27046749  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 27086944 - 27086883
Alignment:
Q  8 cattccttcttgtattctttctctgtctacacttgacaataaagacaacaattataaccttt 69  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||| |||| ||| |||||    
T  27086944 cattccttcttgtattctttctctgtctacacttgacaatatatacatcaataatagccttt 27086883  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 27042796 - 27042731
Alignment:
Q  8 cattccttcttgtattctttctctgtctacacttgacaataaagacaacaattataacctttgtca 73  Q
    |||||||||||||||||| ||| |||||||||||||||||| | |||  ||| |||| ||||||||    
T  27042796 cattccttcttgtattctctctttgtctacacttgacaatatatacataaataataatctttgtca 27042731  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 27071669 - 27071633
Alignment:
Q  15 tcttgtattctttctctgtctacacttgacaataaag 51  Q
    |||||||||||||||||||| ||||||||||||||||    
T  27071669 tcttgtattctttctctgtcaacacttgacaataaag 27071633  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 27092469 - 27092429
Alignment:
Q  11 tccttcttgtattctttctctgtctacacttgacaataaag 51  Q
    ||||||||||||||||||||| || ||||||||||||||||    
T  27092469 tccttcttgtattctttctctatcaacacttgacaataaag 27092429  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 27064702 - 27064664
Alignment:
Q  13 cttcttgtattctttctctgtctacacttgacaataaag 51  Q
    ||||||||||||||||||| || ||||||||||||||||    
T  27064702 cttcttgtattctttctctatcaacacttgacaataaag 27064664  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 27044734 - 27044694
Alignment:
Q  11 tccttcttgtattctttctctgtctacacttgacaataaag 51  Q
    ||||||||||||||||||||| ||||||||  |||||||||    
T  27044734 tccttcttgtattctttctctatctacactgaacaataaag 27044694  T

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Target: chr3; HSP #8
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 27100429 - 27100390
Alignment:
Q  9 attccttcttgtattctttctctgtctacacttgacaata 48  Q
    ||||||||||||||||||||||| || ||| |||||||||    
T  27100429 attccttcttgtattctttctctttccacaattgacaata 27100390  T

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Target: chr3; HSP #9
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 27106936 - 27106897
Alignment:
Q  9 attccttcttgtattctttctctgtctacacttgacaata 48  Q
    |||||||||||||||||||| || |||||| |||||||||    
T  27106936 attccttcttgtattctttcactttctacaattgacaata 27106897  T

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