View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4520_high_11 (Length: 310)
Name: NF4520_high_11
Description: NF4520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4520_high_11 |
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| [»] chr8 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 10 - 310
Target Start/End: Complemental strand, 20136463 - 20136163
Alignment:
| Q |
10 |
acatcatcaaccacagataacttggattcctgaatacaaagcacaaaaggannnnnnn-ctctaactaaacgtcggacctccaccctcttttctcctcct |
108 |
Q |
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||||||||||||||| ||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
20136463 |
acatcatcaaccacaaataacttagattcctgaatacaaagtacaaaaggattttttttctctaactaaacgtcggacctccaccctcttttctcctcct |
20136364 |
T |
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| Q |
109 |
cctaaccccctcacattatatgtctaacaccttcattggtaccactatccttcctcatccccaccaccttccacaaactcaactcctatcaacatctccc |
208 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20136363 |
cctaaccccctcacattatatgtc-aacaccttcattggtaccactatccttcctcatccccaccaccttccacaaactcaactcctatcaacatctccc |
20136265 |
T |
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| Q |
209 |
caattgagccaactgagatatccaatcaaggctccaccgcacagtaacattttgcatattcgaaacaaccttctgttgtagttgaatttcatgaacagaa |
308 |
Q |
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|||||||| ||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20136264 |
caattgaggcaattgagataaccaatcaaggctccacggcacagtaacattttgcatattcgaaacaaccttctgttgtagttgaatttcatgaacagaa |
20136165 |
T |
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| Q |
309 |
ac |
310 |
Q |
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|| |
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| T |
20136164 |
ac |
20136163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 10 - 310
Target Start/End: Original strand, 44355608 - 44355908
Alignment:
| Q |
10 |
acatcatcaaccacagataacttggattcctgaatacaaagcacaaaaggannnnnnn-ctctaactaaacgtcggacctccaccctcttttctcctcct |
108 |
Q |
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| T |
44355608 |
acatcatcaaccacaaataacttagattcctgaatacaaagtacaaaaggattttttttctctaactaaacgtcggacctccaccctcttttctcctcct |
44355707 |
T |
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| Q |
109 |
cctaaccccctcacattatatgtctaacaccttcattggtaccactatccttcctcatccccaccaccttccacaaactcaactcctatcaacatctccc |
208 |
Q |
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| T |
44355708 |
cctaaccccctcacattatatgtc-aacaccttcattggtaccactatccttcctcatccccaccaccttccacaaactcaactcctatcaacatctccc |
44355806 |
T |
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| Q |
209 |
caattgagccaactgagatatccaatcaaggctccaccgcacagtaacattttgcatattcgaaacaaccttctgttgtagttgaatttcatgaacagaa |
308 |
Q |
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|||||||| ||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44355807 |
caattgaggcaattgagataaccaatcaaggctccacggcacagtaacattttgcatattcgaaacaaccttctgttgtagttgaatttcatgaacagaa |
44355906 |
T |
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| Q |
309 |
ac |
310 |
Q |
| |
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|| |
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| T |
44355907 |
ac |
44355908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 48782719 - 48782775
Alignment:
| Q |
72 |
aactaaacgtcggacctccaccctcttttctcctcctcctaaccccctcacattata |
128 |
Q |
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||||||||| || || ||||||||||| || |||||||||||||||| |||||||| |
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| T |
48782719 |
aactaaacgacgcacttccaccctcttctcccctcctcctaacccccggacattata |
48782775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 128
Target Start/End: Complemental strand, 28287642 - 28287595
Alignment:
| Q |
81 |
tcggacctccaccctcttttctcctcctcctaaccccctcacattata |
128 |
Q |
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| T |
28287642 |
tcggacctccaccctcttttcaccacctcccaaccccctcacattata |
28287595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 128
Target Start/End: Complemental strand, 18644344 - 18644298
Alignment:
| Q |
82 |
cggacctccaccctcttttctcctcctcctaaccccctcacattata |
128 |
Q |
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||||||||||||||||| ||||| |||||||||||||| |||||||| |
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| T |
18644344 |
cggacctccaccctcttctctccacctcctaacccccttacattata |
18644298 |
T |
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