View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4520_high_2 (Length: 476)
Name: NF4520_high_2
Description: NF4520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4520_high_2 |
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| [»] scaffold0164 (1 HSPs) |
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Alignment Details
Target: scaffold0164 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 23 - 472
Target Start/End: Complemental strand, 2330 - 1882
Alignment:
| Q |
23 |
cgccggaaaggtgacctcaagaagagagattgaacccaggataattcaaacaaagaaggtacacgaaagcaaccgtatagaggagaaagggtggcttcgc |
122 |
Q |
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| T |
2330 |
cgccggaaaggtgacctcaagaagagagattgaacccaagataattcaaacaaagaagatacacgaaagcaaccgtatagaggagaaagggtggcttcgc |
2231 |
T |
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| Q |
123 |
cgccgtgcgcgtgagtggaataactgtaagaaatgagatatagttatggtaagagtaaaaccggagcctggccggagagggtttattttgccggatagaa |
222 |
Q |
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| T |
2230 |
cgccgtgcgcgtgagtggaataaccgtaagaaatgacatatagttatggtaagagtaaaaccggagcctggccggagagggtttattctgccggatagaa |
2131 |
T |
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| Q |
223 |
acggttaccggtgacattttgagagagagagttttagaaaatttca-ttttttccccccaaactacataatacacacaggattcatcctctctaaagcta |
321 |
Q |
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| T |
2130 |
acggttaccggtgacattttgag----agagttttagaaaatttcatttttttccccccaaactacataatacacacaggattcatcctctctaaagcta |
2035 |
T |
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| Q |
322 |
tggttatggctgc--agagtcaacaaagaaatataacatgaaggggagattgaaattgtagatatctagaaggaagcacttaataacttcgggaaccttt |
419 |
Q |
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| T |
2034 |
tggttatggctgcagagagtcaacaaagaaatataacatgaaggggagattgaaattgtagatatctagaaggaagcacttaataacttcgagaaccttt |
1935 |
T |
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| Q |
420 |
ccctcaagaaagaaaataaacttcctcaagaaagcaagacagaataatctacc |
472 |
Q |
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| T |
1934 |
ccctcaagaaagaaaataaacttcctcaagaaagcaagacagaataaactacc |
1882 |
T |
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Target: chr6 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 310 - 444
Target Start/End: Complemental strand, 18699921 - 18699785
Alignment:
| Q |
310 |
tctctaaagctatggttatggctgcagag--tcaacaaagaaatataacatgaaggggagattgaaattgtagatatctagaaggaagcacttaataact |
407 |
Q |
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| T |
18699921 |
tctctaaagctatggttatgggtgcagagagtcaacaaagatatataacatgaaggggagtttgaaattgtagatctctagaaggaagcacttcataact |
18699822 |
T |
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| Q |
408 |
tcgggaacctttccctcaagaaagaaaataaacttcc |
444 |
Q |
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| T |
18699821 |
tccagaaccattccctcaagaaagaaaataaacttcc |
18699785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 334 - 444
Target Start/End: Complemental strand, 51034156 - 51034046
Alignment:
| Q |
334 |
cagagtcaacaaagaaatataacatgaaggggagattgaaattgtagatatctagaaggaagcacttaataacttcgggaacctttccctcaagaaagaa |
433 |
Q |
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| T |
51034156 |
cagagtcaacaaagaaatagaacatgaaggggagattgaaattgttaatctctagaaggaagcacttcataacttccagaacctttccctcaagaaagaa |
51034057 |
T |
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| Q |
434 |
aataaacttcc |
444 |
Q |
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| T |
51034056 |
aataaacttcc |
51034046 |
T |
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