View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4520_high_20 (Length: 223)
Name: NF4520_high_20
Description: NF4520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4520_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 78 - 204
Target Start/End: Original strand, 11646601 - 11646719
Alignment:
| Q |
78 |
tatctcacatgttaaaaatcaaaatgattgctaacccgtaaatattatgctaaaaacaccataacgtagactaaacaagagaaaaaccaaatatatatct |
177 |
Q |
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| T |
11646601 |
tatctcacatgttaa---tcaaaatgattgctaactcgtaaatattatgctaaaaacaccataacgta-----aacaagagaaaaaccaaatatatatct |
11646692 |
T |
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| Q |
178 |
atatatggtacctatagcatcgccaac |
204 |
Q |
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| T |
11646693 |
atatatggtacctatagcatcgccaac |
11646719 |
T |
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Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 11646268 - 11646326
Alignment:
| Q |
20 |
tgtgcagatgtttgatgacgtgtttgcaatttctatacgctttaaaaactataaacaata |
79 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
11646268 |
tgtgcagatgtttgatgacgtgtttgcaatttcaatacg-tttaaaaactataaacaata |
11646326 |
T |
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