View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4520_high_4 (Length: 472)
Name: NF4520_high_4
Description: NF4520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4520_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 9 - 456
Target Start/End: Complemental strand, 33401831 - 33401384
Alignment:
| Q |
9 |
agcagagatcataaacaattgaggagtaaggcagatgagaatgatgtaggcaaatgctttcctgaagactatactgcaaatggttatcttccggttgttc |
108 |
Q |
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| T |
33401831 |
agcagagatcataaacaattgaggagtaaggcagatgagaatgatgtaggcaaatgctttcctgaagactatactgcaaatggttatcttccggttgttc |
33401732 |
T |
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| Q |
109 |
cttgcggccttgctgcatggagtctattcaatgacacatacagattttcaaacaataataaggacttggtgattaacaaaaagaatatagcatggaaaag |
208 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33401731 |
cttgtggccttgctgcttggagtctattcaatgacacatacagattttcaaacaataataaggacttggtgattaacaaaaagaatatagcatggaaaag |
33401632 |
T |
|
| Q |
209 |
tgaccaaaaggccaaatttgggtctgatgtttatcctaaaaattttcagactggcggtttaattgggggtgctagacttaatgagagcatacctgtaagt |
308 |
Q |
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| T |
33401631 |
tgaccaaaaggccaaatttgggtctgatgtttatcctaaaaattttcagactggcagtttaattgggggtgctagacttaatgagagcatacctgtaagt |
33401532 |
T |
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| Q |
309 |
aaatatttatatatcttcgtcactatataannnnnnncgtgttaaatataattttcttgtcgacattttgagaaaattaatcttgtttgtgttgatgtgg |
408 |
Q |
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| T |
33401531 |
aaatatttatatatctttgtcactatataatttttttcgtgttaaatataattttcttgtcgacattttgagaaaattaatcttgtttgtgttgatgtgg |
33401432 |
T |
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| Q |
409 |
aatgaaacagttgagtgaacaagaggatctgattgtatggatgagaac |
456 |
Q |
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| T |
33401431 |
aatgaaacagttgagtgaacaagaggatctgattgtatggatgagaac |
33401384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 103 - 308
Target Start/End: Original strand, 43599410 - 43599615
Alignment:
| Q |
103 |
ttgttccttgcggccttgctgcatggagtctattcaatgacacatacagattttcaaacaataataaggacttggtgattaacaaaaagaatatagcatg |
202 |
Q |
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|||||||||| ||||| |||||||||| | ||||||||||| |||| |||||||| | || ||||| || || ||||||||||| |||||||| |
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| T |
43599410 |
ttgttccttgtggcctcattgcatggagtatgttcaatgacacctacaaattttcaattgacaacaaggatttaactatcaacaaaaagaacatagcatg |
43599509 |
T |
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| Q |
203 |
gaaaagtgaccaaaaggccaaatttgggtctgatgtttatcctaaaaattttcagactggcggtttaattgggggtgctagacttaatgagagcatacct |
302 |
Q |
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| T |
43599510 |
gggaagtgacaaaaattctaaatttggtcatgaagtttatcctaaaaattttcagagtggaggtttgattggaggtgcaaaactcaatgaaagcgtacct |
43599609 |
T |
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| Q |
303 |
gtaagt |
308 |
Q |
| |
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|||||| |
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| T |
43599610 |
gtaagt |
43599615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 456
Target Start/End: Original strand, 43600904 - 43600944
Alignment:
| Q |
416 |
cagttgagtgaacaagaggatctgattgtatggatgagaac |
456 |
Q |
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| T |
43600904 |
cagttgagtgaacaagaggatctgattgtttggatgagaac |
43600944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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