View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4520_high_9 (Length: 343)
Name: NF4520_high_9
Description: NF4520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4520_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 15 - 321
Target Start/End: Complemental strand, 35074623 - 35074317
Alignment:
| Q |
15 |
atgaacaaatatccttcttctcaacccatcaaagaatgtggggatgattacaatacggtggttatcgaggtacaaggtgcattgcgtgaggatccggaaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35074623 |
atgaacaaatatccttcttctcaacccatcaaagaatgtggggatgattacaatacggtggttatcgaggtacaaggtgcattgcgtgaggatccggaaa |
35074524 |
T |
|
| Q |
115 |
tgataagcatggctgtcaattatgctagcgatgcacttgacatgtgtgaacgtagcttggctgatgaaaagattgtcaatatttcttccattgttgcact |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35074523 |
tgataagcatggctgtcaattatgctagcgatgcacttgacatgtgtgaacgtagcttggctgatgaaaagattgtcaatacttcttccattgttgcact |
35074424 |
T |
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| Q |
215 |
gaatcatgacatgaagttatacacaaatattgtagtgatagccggaggccatctataaattaataaatttacattttatgaataaaaccacaattacata |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
35074423 |
gaatcatgacatgaagttatacacaaatattgtagtgatagccggaggccatctataaattaataaatttacattttatcaataaaaccacaattatata |
35074324 |
T |
|
| Q |
315 |
tacacac |
321 |
Q |
| |
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|||||| |
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| T |
35074323 |
cacacac |
35074317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 16 - 275
Target Start/End: Complemental strand, 35079591 - 35079332
Alignment:
| Q |
16 |
tgaacaaatatccttcttctcaacccatcaaagaatgtggggatgattacaatacggtggttatcgaggtacaaggtgcattgcgtgaggatccggaaat |
115 |
Q |
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|||| |||||||||||||||||||| ||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
35079591 |
tgaaaaaatatccttcttctcaacctatcaaagaatgcggtgatgattacaatacggtggttagcgaggtacaaggtgcattgcgcgaggatccggaaat |
35079492 |
T |
|
| Q |
116 |
gataagcatggctgtcaattatgctagcgatgcacttgacatgtgtgaacgtagcttggctgatgaaaagattgtcaatatttcttccattgttgcactg |
215 |
Q |
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||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||| ||||||||||| |||| || |
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| T |
35079491 |
gataagcttggctgtcaaatatgctagcgatgcacttgacatgtgtgaacgtagcttggctaacgaaaagattgttaatacttcttccattgctgcattg |
35079392 |
T |
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| Q |
216 |
aatcatgacatgaagttatacacaaatattgtagtgatagccggaggccatctataaatt |
275 |
Q |
| |
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|||||||| |||| ||| || ||| |||||||||| |||||||||||||||||||||||| |
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| T |
35079391 |
aatcatgagatgatgttgtatacagatattgtagtcatagccggaggccatctataaatt |
35079332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 21 - 301
Target Start/End: Complemental strand, 25802963 - 25802683
Alignment:
| Q |
21 |
aaatatccttcttctcaacccatcaaagaatgtggggatgattacaatacggtggttatcgaggtacaaggtgcattgcgtgaggatccggaaatgataa |
120 |
Q |
| |
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||||||||||||||| | ||||||| ||| ||| |||||||||| ||| |||||| | |||||| |||| |||||| ||||||||||||| ||||| |
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| T |
25802963 |
aaatatccttcttctgatcccatcagagagtgttttgatgattacagtaccgtggttgttgaggtaaaaggagcattggctgaggatccggaattgatag |
25802864 |
T |
|
| Q |
121 |
gcatggctgtcaattatgctagcgatgcacttgacatgtgtgaacgtagcttggctgatgaaaagattgtcaatatttcttccattgttgcactgaatca |
220 |
Q |
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| |||||||||| |||||| | |||||| | |||||||| ||||||||||| ||| ||||||||||||| |||||||||||||||| | |||||||||| |
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| T |
25802863 |
ggttggctgtcaaatatgctggtgatgcagtcgacatgtgcgaacgtagcttagctaatgaaaagattgttaatatttcttccattgctacactgaatca |
25802764 |
T |
|
| Q |
221 |
tgacatgaagttatacacaaatattgtagtgatagccggaggccatctataaattaataaatttacattttatgaataaaa |
301 |
Q |
| |
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||| ||| |||| || || |||||||||||||||| ||||| ||||||| ||| || ||||||| ||| |||||||||| |
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| T |
25802763 |
tgagatggagttgtatactgatattgtagtgatagctggaggtcatctatgaatcaaaaaatttatattgaatgaataaaa |
25802683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 15 - 309
Target Start/End: Complemental strand, 23922547 - 23922253
Alignment:
| Q |
15 |
atgaacaaatatccttcttctcaacccatcaaagaatgtggggatgattacaatacggtggttatcgaggtacaaggtgcattgcgtgaggatccggaaa |
114 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||| |||||||| |||| |||||| | || ||| ||||||| ||| || ||||| | |
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| T |
23922547 |
atgaaaaaatatccttcttctcaaccaatcaaagaatgtgttgatgattataatagtgtggttggtcaattaaaagttgcattgattgaagaaccggaca |
23922448 |
T |
|
| Q |
115 |
tgataagcatggctgtcaattatgctagcgatgcacttgacatgtgtgaacgtagcttggctgatgaaaagattgtcaatatttcttccattgttgcact |
214 |
Q |
| |
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||| | ||| | |||| |||||||| |||||||||| | ||||||| |||||| ||| |||||||| ||| |||| ||| |||||| | || | |
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| T |
23922447 |
ctatagacttggatatcaaatatgctagtgatgcacttggtaggtgtgaagatagcttagctcgtgaaaagaatgttaatacgtctgccattgctacatt |
23922348 |
T |
|
| Q |
215 |
gaatcatgacatgaagttatacacaaatattgtagtgatagccggaggccatctataaattaataaatttacattttatgaataaaaccacaatt |
309 |
Q |
| |
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||||||||| ||| ||||||| | |||||||| ||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||| |
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| T |
23922347 |
gaatcatgagatgcagttatataatgatattgtattgatagccggaggccatctataaataaataaatttatatttcatgaataaaaccacaatt |
23922253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 301
Target Start/End: Complemental strand, 23914910 - 23914624
Alignment:
| Q |
15 |
atgaacaaatatccttcttctcaacccatcaaagaatgtggggatgattacaatacggtggttatcgaggtacaaggtgcattgcgtgaggatccggaaa |
114 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||| ||||||| |||| |||||| | || ||| ||||||| ||| || ||||| |
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| T |
23914910 |
atgaaaaaatatccttcttctcaacccatcaaagaatgtgctaatgattataatagtgtggttggtcaattaaaagttgcattgattgaagaaccggacc |
23914811 |
T |
|
| Q |
115 |
tgataagcatggctgtcaattatgctagcgatgcacttgacatgtgtgaacgtagcttggctgatgaaaagattgtcaatatttcttccattgttgcact |
214 |
Q |
| |
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| ||| | ||| | ||| |||||||| |||||||||| | ||||||| |||||| ||| |||||||| ||| |||| ||| |||||| | || | |
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| T |
23914810 |
ttatagacttggatatcagatatgctagtgatgcacttggaaggtgtgaagatagcttagctcgtgaaaagaatgttaatacgtctgccattgctacatt |
23914711 |
T |
|
| Q |
215 |
gaatcatgacatgaagttatacacaaatattgtagtgatagccggaggccatctataaattaataaatttacattttatgaataaaa |
301 |
Q |
| |
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||||||||| ||| ||||||| | |||||||| ||||||||| ||||||||||||||| ||| |||||| |||| |||||||||| |
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| T |
23914710 |
gaatcatgagatgcagttatataatgatattgtattgatagccgcaggccatctataaataaattaatttatatttcatgaataaaa |
23914624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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