View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4520_low_1 (Length: 1020)
Name: NF4520_low_1
Description: NF4520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4520_low_1 |
 | |
|
| [»] scaffold0134 (1 HSPs) |
| | |
|
| [»] scaffold0009 (1 HSPs) |
| | |
|
| [»] scaffold0655 (1 HSPs) |
| | |
|
| [»] scaffold0169 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 967; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 967; E-Value: 0
Query Start/End: Original strand, 19 - 1008
Target Start/End: Complemental strand, 24639315 - 24638325
Alignment:
| Q |
19 |
taaagtcccattagaaaatttgcaaaattcaatttaggtcatgagaaaaataaaccgggaaactagtgacacatcttgctttat-tcgctgacatcatcc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
24639315 |
taaagtcccattagaaaatttgcaaaattcaatttaggtcatgagaaaaataaaccgggaaactagtgacacatcttgctttatgtcgctgacatcatcc |
24639216 |
T |
|
| Q |
118 |
tcatcacctcctctcacgatcttcagaaatccatcatgacactccttgttctgagttagctatgaaggattatggtccactgagttacttcttgggcatt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24639215 |
tcatcacctcctctcacgatcttcagaaatccatcatgaaactccttgttctgagttagctatgaaggattatggtccactgagttacttcttgggcatt |
24639116 |
T |
|
| Q |
218 |
gttgtgaccagacatgctcgcaagttcttactcagtcaaagtatttatgctagtggcattattgctcgagcaggcatggcctcatgcaaaccttctgcta |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24639115 |
gttgtgaccagacatgctcgcaagttcttactcagtcaaagtatttatgctagtggcattattgctcgagcaggcatggcctcatgcaaaccttctgcta |
24639016 |
T |
|
| Q |
318 |
ctccagttgacaccacgcagaagctcagtaccaccgctgacacttcatacgatgatcccacctgatatcggagtcttgcaggagtcttccagtatcttac |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24639015 |
ctccagttgacaccacgcagaagctcagtaccaccgctgacacttcatacgatgatcccacctgatatcggagtcttgcaggagtcttccagtatcttac |
24638916 |
T |
|
| Q |
418 |
tttcacccggcctgacatctcttatgttgtccggcaggtgtgtcttcgcatgcatgccccttgtactaaccacatgcttgccctcaaacgcatcatgtgt |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24638915 |
tttcacccggcctgacatctcttatgttgtccggcaggtgtgtctacgcatgcatgccccttgtactaaccacatgcttgccctcaaacgcatcatgtgt |
24638816 |
T |
|
| Q |
518 |
tatgttcggggaaccctacactacggtttgcatctctatccatcccctattgagaaacttatcttctatactgatggtgattggggtggatgtcctgaca |
617 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24638815 |
tatgttcagggaaccctacactacggtttgcatctctatccatcccctattgagaaacttatcttctatactgatggtgattggggtggatgtcctgaca |
24638716 |
T |
|
| Q |
618 |
cctgtcattctacttccgtctattgtatgtttcttggtgacaaccttacatcatggtcttccaaacgacaacccacgctttctcactccagtgcagaagc |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24638715 |
cctgtcattctacttccgtctattgtatgtttcttggtgacaaccttacatcatggtcttccaaacgacaacccacgctttctcactccagtgcagaagc |
24638616 |
T |
|
| Q |
718 |
cggatacagaggtgttgctaatatggtttttgaatcttgttggcttcgcaatcttctcttggagcttcgctacccactttcccaggctactttggtgtat |
817 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24638615 |
cggatacagaggtgttgctaatatggtttctgaatcttgttggcttcgcaatcttctcttggagcttcgctacccactttcccaggctactttggtgtat |
24638516 |
T |
|
| Q |
818 |
tgtgataatgttaatgccatctaccttgctgttaatccattgcaacatcagcatactaaacatattgagatggatattcactttgttctggaaaaggtca |
917 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24638515 |
tgtgataatgttaatgccatctaccttgctgttaatccattgcaacatcagcatactaaacatattgagatggatattcactttgttctggaaaaggtca |
24638416 |
T |
|
| Q |
918 |
tgcgtggtcaggcatgtgtccttcatgttccttctcgtcaccagattgctgacatcatcacaaaggcctactttgagttcattttgatgat |
1008 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24638415 |
tgcgtggtcaggcatgtgtccttcatgttccttctcgtcaccagattgctgacatcatcacaaaggcctactttgagttcattttgatgat |
24638325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 356 - 1008
Target Start/End: Complemental strand, 24647906 - 24647254
Alignment:
| Q |
356 |
gacacttcatacgatgatcccacctgatatcggagtcttgcaggagtcttccagtatcttactttcacccggcctgacatctcttatgttgtccggcagg |
455 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24647906 |
gacacttcatacgatgatcccacctgatatcggagtcttgcaggagtcttccagtatcttaatttcacccggcctgacatctcttatgttgtccggcagg |
24647807 |
T |
|
| Q |
456 |
tgtgtcttcgcatgcatgccccttgtactaaccacatgcttgccctcaaacgcatcatgtgttatgttcggggaaccctacactacggtttgcatctcta |
555 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
24647806 |
tgtgtcttcgcatgcatgccccttgtactaaccacatgcttgccctcaaacgcatcatgtgttatgttcagggaaccctacactacggtttgcatctcta |
24647707 |
T |
|
| Q |
556 |
tccatcccctattgagaaacttatcttctatactgatggtgattggggtggatgtcctgacacctgtcattctacttccgtctattgtatgtttcttggt |
655 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
24647706 |
tccatcccctattgagaaacttatcttctatactgatggtgattggggtggatgtcttgacacctgtcattctacttccgtctattgtgtgtttcttggt |
24647607 |
T |
|
| Q |
656 |
gacaaccttacatcatggtcttccaaacgacaacccacgctttctcactccagtgcagaagccggatacagaggtgttgctaatatggtttttgaatctt |
755 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
24647606 |
gacaaccttacatcatggtcttccaaacgacaacccacactttctcaatccagtgcagaagccggatacagaggtgttgctaatatggtttctgaatctt |
24647507 |
T |
|
| Q |
756 |
gttggcttcgcaatcttctcttggagcttcgctacccactttcccaggctactttggtgtattgtgataatgttaatgccatctaccttgctgttaatcc |
855 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24647506 |
gttggcttcgcaatcttctcttggagcttcgctacccactttcccaggctactttggtgtattgtgataatgttaatgccatctaccttgctgttaatcc |
24647407 |
T |
|
| Q |
856 |
attgcaacatcagcatactaaacatattgagatggatattcactttgttctggaaaaggtcatgcgtggtcaggcatgtgtccttcatgttccttctcgt |
955 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24647406 |
attgcaacatcagcgtactaaacatattgagatggatattcactttgttctggaaaaggtcatgcgtggtcaggcatgtgtccttcatgttccttctcgt |
24647307 |
T |
|
| Q |
956 |
caccagattgctgacatcatcacaaaggcctactttgagttcattttgatgat |
1008 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
24647306 |
caccagattgctgacatcttcacaaaggcctactttgagttctttttgatgat |
24647254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 107 - 988
Target Start/End: Complemental strand, 48100341 - 48099458
Alignment:
| Q |
107 |
tgacatcatcctcatcacctcctctcacgatcttcagaaatccatcatgacactccttgt-tctgagttagctatgaaggattatggtccactgagttac |
205 |
Q |
| |
|
|||||||||||||||||||||||| || || |||| |||||||||||| ||||||||| |||||||| |||||||||||| |||||||||||||| |
|
|
| T |
48100341 |
tgacatcatcctcatcacctcctcccatgagcttcgaaaatccatcatggcactccttgcctctgagtttgctatgaaggatctgggtccactgagttat |
48100242 |
T |
|
| Q |
206 |
ttcttgggcattgttgtgaccagacatgctcgcaagttcttactcagtcaaagtatttatgctagtggcattattgctcgagcaggcatggcctcatgca |
305 |
Q |
| |
|
|| |||||||||| ||||| ||||||| | | | | || || ||||| ||||| |||| | ||| || ||||| || |||||||||||||| |||| |
|
|
| T |
48100241 |
tttttgggcattgccgtgactagacatgttggtgggattttccttagtcagagtatctatgttggtgaaatcattgcccgcgcaggcatggcctcgtgca |
48100142 |
T |
|
| Q |
306 |
aaccttctgctactccagttgacaccacgcagaagctcagtaccaccgctgacacttcatacgatgatcccacctgatatcggagtcttgcaggagtctt |
405 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |||||| |||| |||||||||| ||||||| |||||||||||||||||||| ||| |
|
|
| T |
48100141 |
aaccttctgctactccagttgacaccaaacagaagctcagtacctccgctggcactccatacgatgaccccaccttatatcggagtcttgcaggagcctt |
48100042 |
T |
|
| Q |
406 |
ccagtatcttactttcacccggcctgacatctcttatgttgtccggcaggtgtgtcttcgcatgcatgccccttgtactaaccacatgcttgccctcaaa |
505 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||| | |||||||||||||| ||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
48100041 |
gcagtatcttactttcacccgtcctgacatttcttatgttgttcagcaggtgtgtcttcacatgcatgccccttgcaccgaccacatgcttgccctcaaa |
48099942 |
T |
|
| Q |
506 |
cgcatcatgtgttatgttcggggaaccctacactacggtttgcatctctatccatcccctattgagaaacttatcttctatactgatggtgattggggtg |
605 |
Q |
| |
|
|||||| | ||||||| | ||| ||| ||||||| ||||||||||| |||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
48099941 |
cgcatcctacgttatgtgcagggcaccttacactatggtttgcatctttatccatcccgtattgagaaacttatctcctatactgatgctgattggggtg |
48099842 |
T |
|
| Q |
606 |
gatgtcctgacacctgtcattctacttccgtctattgtatgtttcttggtgacaaccttacatcatggtcttccaaacgacaacccacgctttctcactc |
705 |
Q |
| |
|
||||||| |||||| ||| |||||| || | ||||||| ||||||||||||||||||| | || ||||||||||| ||||||||||| ||||| | ||| |
|
|
| T |
48099841 |
gatgtccagacacccgtcgttctacctctggctattgtgtgtttcttggtgacaacctcatctcctggtcttccaagcgacaacccacactttcgcgctc |
48099742 |
T |
|
| Q |
706 |
cagtgcagaagccggatacagaggtgttgctaatatggtttttgaatcttgttggcttcgcaatcttctcttggagcttcgctacccactttcccaggct |
805 |
Q |
| |
|
||||||||||| | ||||| |||||||||||| |||| | |||||||||||||||||| || ||||||||||| |||| | |||||| || || ||| |
|
|
| T |
48099741 |
tagtgcagaagctgagtacaggggtgttgctaatgtggtatctgaatcttgttggcttcgtaaccttctcttggaacttcatttcccactctctcaagct |
48099642 |
T |
|
| Q |
806 |
actttggtgtattgtgataatgttaatgccatctaccttgctgttaatccattgcaacatcagcatactaaacatattgagatggatattcactttgttc |
905 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||| ||| ||||||| | |||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
48099641 |
actttggtgtattgtgataatgttagtgccatttacctttctggtaatccagtacaacatcagcgcactaaacatattgagatggacattcactttgttc |
48099542 |
T |
|
| Q |
906 |
tggaaaaggtcatgcgtggtcaggcatgtgtccttcatgttccttctcgtcaccagattgctgacatcatca-caaaggcctac |
988 |
Q |
| |
|
|||||||| ||||| |||||| | ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
48099541 |
gagaaaaggtagctcgtggccaggcacgcgtccttcatgttccttctcgtcaccagattgctgacatcttcaccaaaggcctac |
48099458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 293 - 1005
Target Start/End: Original strand, 20619996 - 20620697
Alignment:
| Q |
293 |
atggcctcatgcaaaccttctgctactccagttgacaccacgcagaagctcagtaccaccgctgacacttcatacgatgatcccacctgatatcggagtc |
392 |
Q |
| |
|
|||||||| || |||||| ||||||| |||||||||||| ||||||||||||||||||| |||||||||| | |||||||| | |||||| |||| |
|
|
| T |
20619996 |
atggcctcgtgtgaaccttttgctactacagttgacaccaaacagaagctcagtaccaccgtcaacacttcatataacgatcccactttatatcgaagtc |
20620095 |
T |
|
| Q |
393 |
ttgcaggagtcttccagtatcttactttcacccggcctgacatctcttatgttgtccggcaggtgtgtcttcgcatgcatgccccttgtactaaccacat |
492 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||| ||||||||||||||||||| || ||| ||||||||| ||||||||||||||| || ||||||| |
|
|
| T |
20620096 |
ttgcaggatccttgaagtatcttactttcacccgacctgacatctcttatgttggccaacagatgtgtcttcacatgcatgccccttgcaccgaccacat |
20620195 |
T |
|
| Q |
493 |
gcttgccctcaaacgcatcatgtgttatgttcggggaaccctacactacggtttgcatctctatccatcccctattgagaaacttatcttctatactgat |
592 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
20620196 |
gcttgccctcaaacgcatcatgtgttatgttctgggcaccctacactatggtttgcatctctatccatcccctattgagaaacttatctcctacactgat |
20620295 |
T |
|
| Q |
593 |
ggtgattggggtggatgtcctgacacctgtcattctacttccgtctattgtatgtttcttggtgacaaccttacatcatggtcttccaaacgacaaccca |
692 |
Q |
| |
|
| |||||||||||||||||||||||| || ||| || || | ||||||| ||||||||||||||||||| | ||||| |||| |||||||||||||| |
|
|
| T |
20620296 |
gctgattggggtggatgtcctgacactcgttgttcgacctctggctattgtgtgtttcttggtgacaacctcatttcatgatctttcaaacgacaaccca |
20620395 |
T |
|
| Q |
693 |
cgctttctcactccagtgcagaagccggatacagaggtgttgctaatatggtttttgaatcttgttggcttcgcaatcttctcttggagcttcgctaccc |
792 |
Q |
| |
|
|||||||| ||||| ||||||||| |||| ||| |||||| ||| || ||||||||||||||||||||||| ||| ||| |||||| |
|
|
| T |
20620396 |
cgctttcttgctccaatgcagaagctaaatac------------aatgtggtttctgagtcgtgttggcttcgcaatcttctcttagagtttcactaccc |
20620483 |
T |
|
| Q |
793 |
actttcccaggctactttggtgtattgtgataatgttaatgccatctaccttgctgttaatccattgcaacatcagcatactaaacatattgagatggat |
892 |
Q |
| |
|
||||||||||||| |||||| ||| || |||||||||| | ||||||| ||| ||| ||||||| || ||||||| | ||||||||||||||||||||| |
|
|
| T |
20620484 |
actttcccaggctcctttggagtactgcgataatgttacttccatctagctttctgctaatccaatgaaacatcaacgtactaaacatattgagatggac |
20620583 |
T |
|
| Q |
893 |
attcactttgttctggaaaaggtcatgcgtggtcaggcatgtgtccttcatgttccttctcgtcaccagattgctgacatcatca-caaaggcctacttt |
991 |
Q |
| |
|
|||| |||||| ||||||| | || ||| ||||| | ||||||||||||||||||||||| ||||||||||||||| ||| |||||||| || | |
|
|
| T |
20620584 |
attctatttgtttgagaaaaggccgtgggtgacaaggcacgcgtccttcatgttccttctcgtcatcagattgctgacatcttcaccaaaggccaacctc |
20620683 |
T |
|
| Q |
992 |
gagttcattttgat |
1005 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
20620684 |
gagttctttttgat |
20620697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 806 - 954
Target Start/End: Complemental strand, 29074293 - 29074145
Alignment:
| Q |
806 |
actttggtgtattgtgataatgttaatgccatctaccttgctgttaatccattgcaacatcagcatactaaacatattgagatggatattcactttgttc |
905 |
Q |
| |
|
||||||||||||||||| ||||||| || ||||||||| ||| |||||| | |||||||||| ||| || |||||| |||||| ||||||||||| | |
|
|
| T |
29074293 |
actttggtgtattgtgacaatgttagtgtcatctacctctctggtaatcctgtacaacatcagcgtaccaagtatattgtgatggagattcactttgtac |
29074194 |
T |
|
| Q |
906 |
tggaaaaggtcatgcgtggtcaggcatgtgtccttcatgttccttctcg |
954 |
Q |
| |
|
|||||| || |||||||||||||| | ||||||||||||||||| |
|
|
| T |
29074193 |
gggaaaaagtagctcgtggtcaggcatgcatacttcatgttccttctcg |
29074145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 431; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 89 - 1008
Target Start/End: Original strand, 44386687 - 44387608
Alignment:
| Q |
89 |
acatcttgctttat-tcgctgacatcatcctcatcacctcctctcacgatcttcagaaatccatcatgacactccttgt-tctgagttagctatgaagga |
186 |
Q |
| |
|
|||||||||||||| | | |||||||||||||||||| ||||| || ||||||| ||||||||||||||||||||||| |||||||| || || ||||| |
|
|
| T |
44386687 |
acatcttgctttatgttgatgacatcatcctcatcacatcctcccatgatcttcggaaatccatcatgacactccttgcatctgagtttgccattaagga |
44386786 |
T |
|
| Q |
187 |
ttatggtccactgagttacttcttgggcattgttgtgaccagacatgctcgcaagttcttactcagtcaaagtatttatgctagtggcattattgctcga |
286 |
Q |
| |
|
|| |||||||||||||| || ||||||||| ||||| | ||||| | | |||| ||||| || |||| |||||||||| |||||||||||| |
|
|
| T |
44386787 |
tttgggtccactgagttattttttgggcatttccgtgactaaacatgatggtggactcttcctcagccagagtacctatgctagtgatattattgctcga |
44386886 |
T |
|
| Q |
287 |
gcaggcatggcctcatgcaaaccttctgctactccagttgacaccacgcagaagctcagtaccaccgctgacacttcatacgatgatcccacctgatatc |
386 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||| | ||||||||| || |||||||| | ||||| |
|
|
| T |
44386887 |
gcaggcatggcctcgtgcaaaccttctgctactccagttgacaccaaacaaaagctcagtaccaccgccggcacttcatatgacgatcccactttatatc |
44386986 |
T |
|
| Q |
387 |
ggagtcttgcaggagtcttccagtatcttactttcacccggcctgacatctcttatgttgtccggcaggtgtgtcttcgcatgcatgccccttgtactaa |
486 |
Q |
| |
|
| ||||||||||||| ||| |||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||| |||||| |||| ||| || | |
|
|
| T |
44386987 |
gaagtcttgcaggagccttgcagtatcttactttcacccgacctgacatatcttatgttgtccaacaggtgtgtcttcacatgcacgccctttgcaccga |
44387086 |
T |
|
| Q |
487 |
ccacatgcttgccctcaaacgcatcatgtgttatgttcggggaaccctacactacggtttgcatctctatccatcccctattgagaaacttatcttctat |
586 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||| || ||||||||||| |||||||||||||||| ||| ||||||||||||||||||| ||| |
|
|
| T |
44387087 |
ccacatgcttgccctcaaacgcatcctgcgttatgttcaaggcaccctacactatggtttgcatctctatctatctcctattgagaaacttatctcctac |
44387186 |
T |
|
| Q |
587 |
actgatggtgattggggtggatgtcctgacacctgtcattctacttccgtctattgtatgtttcttggtgacaaccttacatcatggtcttccaaacgac |
686 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||| ||| || | | ||||||| ||||||||||||||||||| | || |||||||||||||||| |
|
|
| T |
44387187 |
actgatgctgattggggtggatgtcctgacacccgtcgttcgaccgctggctattgtgtgtttcttggtgacaacctcatttcttggtcttccaaacgac |
44387286 |
T |
|
| Q |
687 |
aacccacgctttctcactccagtgcagaagccggatacagaggtgttgctaatatggtttttgaatcttgttggcttcgcaatcttctcttggagcttcg |
786 |
Q |
| |
|
||||||| |||||| ||| ||||||||||| || | |||||||||||| |||||| |||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
44387287 |
aacccacactttcttgctcaagtgcagaagctaagtatatgggtgttgctaatgtggtttctgaatcatgttggcttcgcaatcttctcttagagcttca |
44387386 |
T |
|
| Q |
787 |
ctacccactttcccaggctactttggtgtattgtgataatgttaatgccatctaccttgctgttaatccattgcaacatcagcatactaaacatattgag |
886 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||| ||| ||||||| |||| ||||| | |||||||||||||||| |
|
|
| T |
44387387 |
ctacccactttcccagactagtttggtgtattgtgataatgttagtgccatctacctttctggtaatccagtgcagcatcaacgtactaaacatattgag |
44387486 |
T |
|
| Q |
887 |
atggatattcactttgttctggaaaaggtcatgcgtggtcaggcatgtgtccttcatgttccttctcgtcaccagattgctgacatcatca-caaaggcc |
985 |
Q |
| |
|
||||| ||||||||||||| |||||||||| ||||||| |||||| ||||||||||||||||||||||||| ||||||||| ||||| ||| ||||| || |
|
|
| T |
44387487 |
atggacattcactttgttc-ggaaaaggtcgtgcgtggccaggcacgtgtccttcatgttccttctcgtcatcagattgctcacatcttcaccaaagtcc |
44387585 |
T |
|
| Q |
986 |
tactttgagttcattttgatgat |
1008 |
Q |
| |
|
||| | |||||| |||||||||| |
|
|
| T |
44387586 |
tacctcgagttctttttgatgat |
44387608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 107 - 988
Target Start/End: Complemental strand, 9933059 - 9932176
Alignment:
| Q |
107 |
tgacatcatcctcatcacctcctctcacgatcttcagaaatccatcatgacactccttgt-tctgagttagctatgaaggattatggtccactgagttac |
205 |
Q |
| |
|
|||||||||||||||||||||||| || || |||| |||||||||||| ||||||||| |||||||| |||||||||||| |||||||||||||| |
|
|
| T |
9933059 |
tgacatcatcctcatcacctcctcccatgagcttcgaaaatccatcatggcactccttgcctctgagtttgctatgaaggatctgggtccactgagttat |
9932960 |
T |
|
| Q |
206 |
ttcttgggcattgttgtgaccagacatgctcgcaagttcttactcagtcaaagtatttatgctagtggcattattgctcgagcaggcatggcctcatgca |
305 |
Q |
| |
|
|| |||||||||| ||||| ||||||| | | | | || || ||||| ||||| |||||| ||| || ||||| || |||||||||||||| |||| |
|
|
| T |
9932959 |
tttttgggcattgccgtgactagacatgttggtgggattttccttagtcagagtatctatgctggtgaaatcattgcccgcgcaggcatggcctcgtgca |
9932860 |
T |
|
| Q |
306 |
aaccttctgctactccagttgacaccacgcagaagctcagtaccaccgctgacacttcatacgatgatcccacctgatatcggagtcttgcaggagtctt |
405 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||| ||||| ||||||| |||||||||||||||||||| ||| |
|
|
| T |
9932859 |
aaccttctgctactccagttgacaccaaacagaagctcagtacctccgctgacactccatatgatgaccccaccttatatcggagtcttgcaggagcctt |
9932760 |
T |
|
| Q |
406 |
ccagtatcttactttcacccggcctgacatctcttatgttgtccggcaggtgtgtcttcgcatgcatgccccttgtactaaccacatgcttgccctcaaa |
505 |
Q |
| |
|
|||||||||||||||||||| ||||| || ||||||| ||| | |||||||||| ||| ||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
9932759 |
gcagtatcttactttcacccgtcctgatatttcttatgctgttcagcaggtgtgtattcacatgcatgccccttgcaccgaccacatgcttgccctcaaa |
9932660 |
T |
|
| Q |
506 |
cgcatcatgtgttatgttcggggaaccctacactacggtttgcatctctatccatcccctattgagaaacttatcttctatactgatggtgattggggtg |
605 |
Q |
| |
|
|||||| | ||||||| | ||| ||| ||||||| ||||||||||| |||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
9932659 |
cgcatcctacgttatgtgcagggcaccttacactatggtttgcatctttatccatcccgtattgagaaacttatctcctatactgatgctgattggggtg |
9932560 |
T |
|
| Q |
606 |
gatgtcctgacacctgtcattctacttccgtctattgtatgtttcttggtgacaaccttacatcatggtcttccaaacgacaacccacgctttctcactc |
705 |
Q |
| |
|
||||||| |||||| ||| |||||| || | ||||||| ||||||||||||||||||| | || ||||||||||| ||||||||||| ||||| | ||| |
|
|
| T |
9932559 |
gatgtccagacacccgtcgttctacctctggctattgtgtgtttcttggtgacaacctcatctcctggtcttccaagcgacaacccacactttcgcgctc |
9932460 |
T |
|
| Q |
706 |
cagtgcagaagccggatacagaggtgttgctaatatggtttttgaatcttgttggcttcgcaatcttctcttggagcttcgctacccactttcccaggct |
805 |
Q |
| |
|
||||||||||| | ||||| |||||||||||| |||| | |||||||||||||||||| || ||||||||||| |||| | |||||| || || ||| |
|
|
| T |
9932459 |
tagtgcagaagctgagtacaggggtgttgctaatgtggtatctgaatcttgttggcttcgtaaccttctcttggaacttcatttcccactctctcaagct |
9932360 |
T |
|
| Q |
806 |
actttggtgtattgtgataatgttaatgccatctaccttgctgttaatccattgcaacatcagcatactaaacatattgagatggatattcactttgttc |
905 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||| ||| ||||||| | |||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
9932359 |
actttggtgtattgtgataatgttagtgccatttacctttctggtaatccagtacaacatcagcgcactaaacatattgagatggacattcactttgttc |
9932260 |
T |
|
| Q |
906 |
tggaaaaggtcatgcgtggtcaggcatgtgtccttcatgttccttctcgtcaccagattgctgacatcatca-caaaggcctac |
988 |
Q |
| |
|
|||||||| ||||| |||||| | ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
9932259 |
gagaaaaggtagctcgtggccaggcacgcgtccttcatgttccttctcgtcaccagattgctgacatcttcaccaaaggcctac |
9932176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 596 - 966
Target Start/End: Original strand, 45029605 - 45029975
Alignment:
| Q |
596 |
gattggggtggatgtcctgacacctgtcattctacttccgtctattgtatgtttcttggtgacaaccttacatcatggtcttccaaacgacaacccacgc |
695 |
Q |
| |
|
|||||||||||||||||||||||| | | ||| ||||| | || ||| | ||||| ||||||||||| | | ||||| ||||| |||||||||| | |
|
|
| T |
45029605 |
gattggggtggatgtcctgacacccgacgttccacttctggatactgtgtctttctcggtgacaacctcatcgcttggtcctccaagagacaacccactc |
45029704 |
T |
|
| Q |
696 |
tttctcactccagtgcagaagccggatacagaggtgttgctaatatggtttttgaatcttgttggcttcgcaatcttctcttggagcttcgctacccact |
795 |
Q |
| |
|
| |||| || ||||| ||||| | ||| ||||||||||||||| | || | ||| || ||||||||||| ||||| | ||||||| | || || | |
|
|
| T |
45029705 |
tctctcggtctagtgctgaagcggaatatagaggtgttgctaatgttgtgtctgagtcatgttggcttcgtaatctcttactggagctccactttcctat |
45029804 |
T |
|
| Q |
796 |
ttcccaggctactttggtgtattgtgataatgttaatgccatctaccttgctgttaatccattgcaacatcagcatactaaacatattgagatggatatt |
895 |
Q |
| |
|
| | ||||||||||||||||||||||| ||||||| |||||||||||| ||| || || |||| ||||| | ||| ||||| ||||| ||||| || |
|
|
| T |
45029805 |
tcctcaggctactttggtgtattgtgacaatgttagtgccatctacctatctggcaaccctgtgcagcatcaacgtaccaaacacattgaaatggacata |
45029904 |
T |
|
| Q |
896 |
cactttgttctggaaaaggtcatgcgtggtcaggcatgtgtccttcatgttccttctcgtcaccagattgc |
966 |
Q |
| |
|
|||||||| | |||||| || |||||||||||| | ||||| |||||||| ||||| || |||||||| |
|
|
| T |
45029905 |
cactttgtacgggaaaaagtagctcgtggtcaggcacgcgtcctccatgttccatctcgacatcagattgc |
45029975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 596 - 966
Target Start/End: Original strand, 45034456 - 45034826
Alignment:
| Q |
596 |
gattggggtggatgtcctgacacctgtcattctacttccgtctattgtatgtttcttggtgacaaccttacatcatggtcttccaaacgacaacccacgc |
695 |
Q |
| |
|
|||||||||||||||||||||||| | | ||| ||||| | || ||| | ||||| ||||||||||| | | ||||| ||||| |||||||||| | |
|
|
| T |
45034456 |
gattggggtggatgtcctgacacccgacgttccacttctggatactgtgtctttctcggtgacaacctcatcgcttggtcctccaagagacaacccactc |
45034555 |
T |
|
| Q |
696 |
tttctcactccagtgcagaagccggatacagaggtgttgctaatatggtttttgaatcttgttggcttcgcaatcttctcttggagcttcgctacccact |
795 |
Q |
| |
|
| |||| || ||||| ||||| | ||| ||||||||||||||| | || | ||| || ||||||||||| ||||| | ||||||| | || || | |
|
|
| T |
45034556 |
tctctcggtctagtgctgaagcggaatatagaggtgttgctaatgttgtgtctgagtcatgttggcttcgtaatctcttactggagctccactttcctat |
45034655 |
T |
|
| Q |
796 |
ttcccaggctactttggtgtattgtgataatgttaatgccatctaccttgctgttaatccattgcaacatcagcatactaaacatattgagatggatatt |
895 |
Q |
| |
|
| | ||||||||||||||||||||||| ||||||| |||||||||||| | | || || |||| ||||| | ||| ||||| ||||| ||||| || |
|
|
| T |
45034656 |
tcctcaggctactttggtgtattgtgacaatgttagtgccatctacctatccggcaaccctgtgcagcatcaacgtaccaaacacattgaaatggacata |
45034755 |
T |
|
| Q |
896 |
cactttgttctggaaaaggtcatgcgtggtcaggcatgtgtccttcatgttccttctcgtcaccagattgc |
966 |
Q |
| |
|
|||||||| | |||||| || |||||||||||| | ||||| |||||||| ||||| || |||||||| |
|
|
| T |
45034756 |
cactttgtacgggaaaaagtagctcgtggtcaggcacgcgtcctccatgttccatctcgacatcagattgc |
45034826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 596 - 912
Target Start/End: Original strand, 24209828 - 24210144
Alignment:
| Q |
596 |
gattggggtggatgtcctgacacctgtcattctacttccgtctattgtatgtttcttggtgacaaccttacatcatggtcttccaaacgacaacccacgc |
695 |
Q |
| |
|
|||||||||||||||||||||||| | | ||| ||||| | || ||| | ||||| ||||||||||| | | ||||| ||||| |||||||||| | |
|
|
| T |
24209828 |
gattggggtggatgtcctgacacccgacgttccacttctggatactgtgtctttctcggtgacaacctcatcgcttggtcctccaagagacaacccactc |
24209927 |
T |
|
| Q |
696 |
tttctcactccagtgcagaagccggatacagaggtgttgctaatatggtttttgaatcttgttggcttcgcaatcttctcttggagcttcgctacccact |
795 |
Q |
| |
|
| |||| || ||||| ||||| | ||| ||||||||||||||| | || | ||| || ||||||||||| ||||| | ||||||| | || || | |
|
|
| T |
24209928 |
tctctcggtctagtgctgaagcggaatatagaggtgttgctaatgttgtgtctgagtcatgttggcttcgtaatctcttactggagctccactttcctat |
24210027 |
T |
|
| Q |
796 |
ttcccaggctactttggtgtattgtgataatgttaatgccatctaccttgctgttaatccattgcaacatcagcatactaaacatattgagatggatatt |
895 |
Q |
| |
|
| | ||||||||||||||||||||||| ||||||| |||||||||||| ||| || || |||| ||||| | ||| ||||| ||||| ||||| || |
|
|
| T |
24210028 |
tcctcaggctactttggtgtattgtgacaatgttagtgccatctacctatctggcaaccctgtgcagcatcaacgtaccaaacacattgaaatggacata |
24210127 |
T |
|
| Q |
896 |
cactttgttctggaaaa |
912 |
Q |
| |
|
|||||||| | |||||| |
|
|
| T |
24210128 |
cactttgtacgggaaaa |
24210144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 638 - 781
Target Start/End: Complemental strand, 7324652 - 7324509
Alignment:
| Q |
638 |
tattgtatgtttcttggtgacaaccttacatcatggtcttccaaacgacaacccacgctttctcactccagtgcagaagccggatacagaggtgttgcta |
737 |
Q |
| |
|
|||||| | |||||||||||||| || ||||||||||||||||| |||||||| | |||| ||| ||||| ||||||| |||| |||||||||| | |
|
|
| T |
7324652 |
tattgtgtatttcttggtgacaatctactctcatggtcttccaaacgccaacccacattatctcgctctagtgctgaagccgaataccgaggtgttgcca |
7324553 |
T |
|
| Q |
738 |
atatggtttttgaatcttgttggcttcgcaatcttctcttggag |
781 |
Q |
| |
|
|| | || | ||| ||||||||| | ||||| || || |||||| |
|
|
| T |
7324552 |
atgtcgtatctgagtcttgttggttacgcaacctacttttggag |
7324509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 668 - 774
Target Start/End: Original strand, 30332255 - 30332361
Alignment:
| Q |
668 |
tcatggtcttccaaacgacaacccacgctttctcactccagtgcagaagccggatacagaggtgttgctaatatggtttttgaatcttgttggcttcgca |
767 |
Q |
| |
|
||||||||| | ||||||||||| || ||||||| || ||||||||||| | || | |||||||||||| | |||| ||||||||||||||||| | |
|
|
| T |
30332255 |
tcatggtctgctaaacgacaaccaactctttctcgttctagtgcagaagcggagtatcgtggtgttgctaatgttgtttcagaatcttgttggcttcgaa |
30332354 |
T |
|
| Q |
768 |
atcttct |
774 |
Q |
| |
|
||||||| |
|
|
| T |
30332355 |
atcttct |
30332361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 488 - 1013
Target Start/End: Original strand, 23583737 - 23584262
Alignment:
| Q |
488 |
cacatgcttgccctcaaacgcatcatgtgttatgttcggggaaccctacactacggtttgcatctctatccatcccctattgagaaacttatcttctata |
587 |
Q |
| |
|
||||||||||| |||||||||||| || |||||||| ||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
23583737 |
cacatgcttgctctcaaacgcatcttgcattatgttcagggcaccctacactatggtttgcatctctatccattccctattgagaaacttatctcctata |
23583836 |
T |
|
| Q |
588 |
ctgatggtgattggggtggatgtcctgacacctgtcattctacttccgtctattgtatgtttcttggtgacaaccttacatcatggtcttccaaacgaca |
687 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||| ||| ||||||||| | ||||||| | ||||||||||| ||||| | || ||||||||||| |||| |
|
|
| T |
23583837 |
ctgatgctgattcgggtggatgtcctgacacccgtcgttctacttctggctattgtgtatttcttggtgataacctcatttcctggtcttccaagagaca |
23583936 |
T |
|
| Q |
688 |
acccacgctttctcactccagtgcagaagccggatacagaggtgttgctaatatggtttttgaatcttgttggcttcgcaatcttctcttggagcttcgc |
787 |
Q |
| |
|
|||||| ||||||| || |||||| |||| | ||||| |||||||||||| |||| | ||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
23583937 |
acccacactttctcggtctagtgcaaaagctgagtacaggggtgttgctaatgtggtatctgaatcttgttggtttcgcaaccttctcttggagcttcat |
23584036 |
T |
|
| Q |
788 |
tacccactttcccaggctactttggtgtattgtgataatgttaatgccatctaccttgctgttaatccattgcaacatcagcatactaaacatattgaga |
887 |
Q |
| |
|
| |||||| || |||||||| |||||||||||||||||||||| ||||||||||||| || ||||||| | |||||| | | ||||||||||||||| |
|
|
| T |
23584037 |
ttcccactctctcaggctaccttggtgtattgtgataatgttagtgccatctacctttctcgtaatccagtacaacat-aacgcgctaaacatattgaga |
23584135 |
T |
|
| Q |
888 |
tggatattcactttgttctggaaaaggtcatgcgtggtcaggcatgtgtccttcatgttccttctcgtcaccagattgctgacatcatca-caaaggcct |
986 |
Q |
| |
|
|||| ||||||||||||| | ||||||| ||||| |||||| | |||||||||||||||||||||||||||||||||| | || ||| |||||| || |
|
|
| T |
23584136 |
tggacattcactttgttcgaggaaaggtcgctcgtggccaggcacgcgtccttcatgttccttctcgtcaccagattgctgtcgtcttcaccaaaggtct |
23584235 |
T |
|
| Q |
987 |
actttgagttcattttgatgatgtcca |
1013 |
Q |
| |
|
|| | | |||| |||||||||| |||| |
|
|
| T |
23584236 |
acctcgtgttctttttgatgatttcca |
23584262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 275 - 470
Target Start/End: Original strand, 23583548 - 23583743
Alignment:
| Q |
275 |
attattgctcgagcaggcatggcctcatgcaaaccttctgctactccagttgacaccacgcagaagctcagtaccaccgctgacacttcatacgatgatc |
374 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||| |||| | | |||| ||||||| |||| |
|
|
| T |
23583548 |
attattgcccgagcaggcatggcctcgtgcaaaccttctactactccagttgacaccaaacagaagctcgttacctctatcggcactccatacgacgatc |
23583647 |
T |
|
| Q |
375 |
ccacctgatatcggagtcttgcaggagtcttccagtatcttactttcacccggcctgacatctcttatgttgtccggcaggtgtgtcttcgcatgc |
470 |
Q |
| |
|
|||||| ||| | ||||||| |||| ||| |||||||||||||||||||| ||| |||||||||||||||| | ||||||||||||| ||||| |
|
|
| T |
23583648 |
ccaccttgtattgaagtcttgtgggagccttgcagtatcttactttcacccgtcctcacatctcttatgttgttcaacaggtgtgtcttcacatgc |
23583743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 575 - 978
Target Start/End: Complemental strand, 40270846 - 40270443
Alignment:
| Q |
575 |
cttatcttctatactgatggtgattggggtggatgtcctgacacctgtcattctacttccgtctattgtatgtttcttggtgacaaccttacatcatggt |
674 |
Q |
| |
|
||||||| ||| ||||| | ||||||||||||||||||||||||| | | |||||| || | |||||| | ||||| ||||||||||||| || |||| |
|
|
| T |
40270846 |
cttatctcctacactgacgctgattggggtggatgtcctgacaccagacgttctacatctggttattgtgtttttctaggtgacaaccttatttcttggt |
40270747 |
T |
|
| Q |
675 |
cttccaaacgacaacccacgctttctcactccagtgcagaagccggatacagaggtgttgctaatatggtttttgaatcttgttggcttcgcaatcttct |
774 |
Q |
| |
|
|||||||||| || || || || || | || ||||| ||||| | ||| ||||||||||| ||| | || | |||||| |||||| ||||||||||||| |
|
|
| T |
40270746 |
cttccaaacggcagccaactctctcccgttctagtgctgaagctgaatatagaggtgttgcaaatgttgtctctgaatcgtgttggattcgcaatcttct |
40270647 |
T |
|
| Q |
775 |
cttggagcttcgctacccactttcccaggctactttggtgtattgtgataatgttaatgccatctaccttgctgttaatccattgcaacatcagcatact |
874 |
Q |
| |
|
|||| || | | || || ||||| ||||||||||||| ||| ||||||| ||||||||| || ||| |||||| |||| ||||||| | | |
|
|
| T |
40270646 |
tctggaactccattttcctattcatcaggccactttggtgtattatgacaatgttagtgccatctatctatctggtaatcctgtgcagcatcagcgcatt |
40270547 |
T |
|
| Q |
875 |
aaacatattgagatggatattcactttgttctggaaaaggtcatgcgtggtcaggcatgtgtccttcatgttccttctcgtcaccagattgctgacatca |
974 |
Q |
| |
|
||||||||||||||| | ||||| ||||||| |||||||||| ||||||||||| | |||||||||||||| || | || ||||| ||||||||| |
|
|
| T |
40270546 |
aaacatattgagatgaacattcattttgttcgggaaaaggtcgctcgtggtcaggctcgcgtccttcatgttccctcaagacatcagatcgctgacatct |
40270447 |
T |
|
| Q |
975 |
tcac |
978 |
Q |
| |
|
|||| |
|
|
| T |
40270446 |
tcac |
40270443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 858 - 948
Target Start/End: Original strand, 31343149 - 31343239
Alignment:
| Q |
858 |
tgcaacatcagcatactaaacatattgagatggatattcactttgttctggaaaaggtcatgcgtggtcaggcatgtgtccttcatgttcc |
948 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||| ||||| ||||||| |||||| || |||||||| |||||||| ||||||||||| |
|
|
| T |
31343149 |
tgcaacatcagcgtaccaaacatattgagatggacattcattttgttcgggaaaaagtagctcgtggtcaagcatgtgtacttcatgttcc |
31343239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 668 - 774
Target Start/End: Complemental strand, 32307406 - 32307300
Alignment:
| Q |
668 |
tcatggtcttccaaacgacaacccacgctttctcactccagtgcagaagccggatacagaggtgttgctaatatggtttttgaatcttgttggcttcgca |
767 |
Q |
| |
|
||||||||| ||||||||||||| || ||||||| || ||||||||||| | || | |||||||||||| | |||| |||||||||||||||||| | |
|
|
| T |
32307406 |
tcatggtctgccaaacgacaaccaactctttctcgttctagtgcagaagcggagtatcgtggtgttgctaatgttgtttctgaatcttgttggcttcgaa |
32307307 |
T |
|
| Q |
768 |
atcttct |
774 |
Q |
| |
|
| ||||| |
|
|
| T |
32307306 |
accttct |
32307300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 23583379 - 23583500
Alignment:
| Q |
107 |
tgacatcatcctcatcacctcctctcacgatcttcagaaatccatcatgacactcctt-gttctgagttagctatgaaggattatggtccactgagttac |
205 |
Q |
| |
|
|||||||||||| ||||||||||| || |||||| ||||| |||||| |||||||| |||||||| ||||||||||||| |||||| || |||| |
|
|
| T |
23583379 |
tgacatcatccttatcacctcctcccattatcttcgaaaatctatcatggcactccttacctctgagtttgctatgaaggatttgggtccattgtgttat |
23583478 |
T |
|
| Q |
206 |
ttcttgggcattgttgtgacca |
227 |
Q |
| |
|
|| || ||||||| ||||||| |
|
|
| T |
23583479 |
ttttttggcattgccgtgacca |
23583500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 824 - 978
Target Start/End: Original strand, 19183449 - 19183603
Alignment:
| Q |
824 |
aatgttaatgccatctaccttgctgttaatccattgcaacatcagcatactaaacatattgagatggatattcactttgttctggaaaaggtcatgcgtg |
923 |
Q |
| |
|
||||||| |||||||||||| ||| |||||| |||| ||||| ||| ||||| ||| |||| || ||||| ||||||| |||||| || |||| |
|
|
| T |
19183449 |
aatgttagtgccatctacctatctggtaatcctgtgcagtatcagtgtaccaaacacattaagatagacattcattttgttcgggaaaaagtagctcgtg |
19183548 |
T |
|
| Q |
924 |
gtcaggcatgtgtccttcatgttccttctcgtcaccagattgctgacatcatcac |
978 |
Q |
| |
|
||||||||||||| || ||| |||| || | ||||||||||| |||||| |||| |
|
|
| T |
19183549 |
gtcaggcatgtgttctacatattccctcaagacaccagattgcagacatcttcac |
19183603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 144; Significance: 3e-75; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 111 - 461
Target Start/End: Complemental strand, 21877629 - 21877278
Alignment:
| Q |
111 |
atcatcctcatcacctcctctcacgatcttcagaaatccatcatgacactccttgt-tctgagttagctatgaaggattatggtccactgagttacttct |
209 |
Q |
| |
|
|||||||||||||||||||| || |||||||| |||||||||||| |||| |||| |||||||| |||||||||||| |||||| ||||||||||| |
|
|
| T |
21877629 |
atcatcctcatcacctcctcccatgatcttcataaatccatcatggcactacttgcctctgagtttactatgaaggatttgggtccattgagttacttcc |
21877530 |
T |
|
| Q |
210 |
tgggcattgttgtgaccagacatgctcgcaagttcttactcagtcaaagtatttatgctagtggcattattgctcgagcaggcatggcctcatgcaaacc |
309 |
Q |
| |
|
|||||| | | ||||||||||||||| | | | | || | ||||| |||||||||||||||| | |||||||||||| || |||||||| |||||||| |
|
|
| T |
21877529 |
tgggcactttcgtgaccagacatgctggtaggattttccctagtcagagtatttatgctagtgactttattgctcgagtagacatggccttgtgcaaacc |
21877430 |
T |
|
| Q |
310 |
ttctgctactccagttgacaccacgcagaagctcagtaccaccgctgacacttcatacgatgatcccacctgatatcggagtcttgcaggagtcttccag |
409 |
Q |
| |
|
||||||||||||||||| |||| ||| || ||||||||||| | || |||||||||||||||| |||||| ||||| |||| |||| || |||| || |
|
|
| T |
21877429 |
ttctgctactccagttgtaaccaagcaaaaactcagtaccactgatgtcacttcatacgatgataccaccttatatcagagttctgcaagattcttgcaa |
21877330 |
T |
|
| Q |
410 |
tatcttactttcacccggcctgacatctcttatgttgtccggcaggtgtgtc |
461 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||| ||||||||| |
|
|
| T |
21877329 |
tatcttactttcacccggcctgatatctcttatgtcgtccggtaggtgtgtc |
21877278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 383 - 552
Target Start/End: Complemental strand, 22208109 - 22207940
Alignment:
| Q |
383 |
tatcggagtcttgcaggagtcttccagtatcttactttcacccggcctgacatctcttatgttgtccggcaggtgtgtcttcgcatgcatgccccttgta |
482 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||| | ||||||| ||||| ||||||| ||||||| | |
|
|
| T |
22208109 |
tatcggagtcttgcaggagccttgcagtatcttactttcacccatcctgacatctcttatgttgttcaacaggtgtatcttcacatgcataccccttgca |
22208010 |
T |
|
| Q |
483 |
ctaaccacatgcttgccctcaaacgcatcatgtgttatgttcggggaaccctacactacggtttgcatct |
552 |
Q |
| |
|
| ||||| ||||| | ||||||| |||| || ||||||| ||||||||| |||| ||||||||||| |
|
|
| T |
22208009 |
ccgaccacgtgcttactctcaaacacatcttgcattatgttaagggaaccctgtactatggtttgcatct |
22207940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 317 - 978
Target Start/End: Original strand, 16594202 - 16594863
Alignment:
| Q |
317 |
actccagttgacaccacgcagaagctcagtaccaccgctgacacttcatacgatgatcccacctgatatcggagtcttgcaggagtcttccagtatctta |
416 |
Q |
| |
|
||||| |||||||||| |||||| ||||| ||| || | | |||||| || || ||||| ||| ||||||||||||||||| | | || ||||||| | |
|
|
| T |
16594202 |
actcctgttgacaccaagcagaaactcagcacctcctccggcacttcttatgaggatccttccttgtatcggagtcttgcaggggccctctagtatctca |
16594301 |
T |
|
| Q |
417 |
ctttcacccggcctgacatctcttatgttgtccggcaggtgtgtcttcgcatgcatgccccttgtactaaccacatgcttgccctcaaacgcatcatgtg |
516 |
Q |
| |
|
| ||||| || |||||| | || |||| ||| | ||| || ||||||| |||||||||||| | || | |||||||| || ||||| ||| | || | |
|
|
| T |
16594302 |
ccttcactcgacctgacttatcatatgctgttcagcaagtttgtcttcatatgcatgcccctcgcacggaacacatgctggctctcaagcgcgttctgcg |
16594401 |
T |
|
| Q |
517 |
ttatgttcggggaaccctacactacggtttgcatctctatccatcccctattgagaaactt-atcttctatactgatggtgattggggtggatgtcctga |
615 |
Q |
| |
|
||||||| ||| ||| |||| | || || ||| | | ||||| |||||| | ||| || |||| ||| ||||| | ||||||||||||||||||||| |
|
|
| T |
16594402 |
ctatgttcagggcaccttacattttggattacatttatcaccatctcctatt-acaaagttgatctcctacactgacgctgattggggtggatgtcctga |
16594500 |
T |
|
| Q |
616 |
cacctgtcattctacttccgtctattgtatgtttcttggtgacaaccttacatcatggtcttccaaacgacaacccacgctttctcactccagtgcagaa |
715 |
Q |
| |
|
||| | | ||||| || | || ||| | ||||| ||||||||||||| || |||||||||||| | ||||| || || || | || ||||| ||| |
|
|
| T |
16594501 |
cactagacggtctacatctggttactgtgtttttctaggtgacaaccttatttcttggtcttccaaaaggcaacctactctctcccgttctagtgctgaa |
16594600 |
T |
|
| Q |
716 |
gccggatacagaggtgttgctaatatggtttttgaatcttgttggcttcgcaatcttctcttggagcttcgctacccactttcccaggctactttggtgt |
815 |
Q |
| |
|
|||| ||| || || ||||| ||| | |||| ||||| |||||| |||||||||||||| | || || | | || || | |||| |||||||||| |
|
|
| T |
16594601 |
gccgaatataggggagttgcaaatgttgtttccgaatcgtgttggattcgcaatcttctcctagaactccattttcctattcctgaggccactttggtgt |
16594700 |
T |
|
| Q |
816 |
attgtgataatgttaatgccatctaccttgctgttaatccattgcaacatcagcatactaaacatattgagatggatattcactttgttctggaaaaggt |
915 |
Q |
| |
|
||||||| ||||||| ||||||||| || ||| |||||| |||| ||||||| ||||| |||||||||||||| ||||| ||||||| ||||||||| |
|
|
| T |
16594701 |
attgtgacaatgttagtgccatctatctatctggtaatcctgtgcagcatcagcgcactaagcatattgagatggacattcattttgttcgggaaaaggt |
16594800 |
T |
|
| Q |
916 |
catgcgtggtcaggcatgtgtccttcatgttccttctcgtcaccagattgctgacatcatcac |
978 |
Q |
| |
|
| ||||| ||||| | |||||||||||||| ||| | || || ||||| |||||| |||| |
|
|
| T |
16594801 |
cgctcgtggccaggctcgcgtccttcatgttccctctagacatcaaattgcagacatcttcac |
16594863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 596 - 966
Target Start/End: Original strand, 33165844 - 33166216
Alignment:
| Q |
596 |
gattggggtggatgtcctgacacctgtcattctacttccgtctattgtatgtttcttggtgacaaccttacatcatggtcttccaaacgacaacccacgc |
695 |
Q |
| |
|
|||||||||||||||||||||||||| | ||| ||||| | || ||| | ||||| ||||||||||| | | ||||| ||||| |||||||||| | |
|
|
| T |
33165844 |
gattggggtggatgtcctgacacctgacgttccacttctggatactgtgtctttctcggtgacaacctcatcgcttggtcctccaagagacaacccactc |
33165943 |
T |
|
| Q |
696 |
tttctcactccagtgcagaagccggatacagaggtgttgctaatatggtttttgaatcttgttggcttcgcaatcttctcttggagcttcgctacccact |
795 |
Q |
| |
|
| |||| || ||||| ||||| | ||| ||||||||||||||| | || | ||| || ||||||||||| ||||| | |||||| | || || | |
|
|
| T |
33165944 |
tctctcggtctagtgctgaagcggaatatagaggtgttgctaatgttgtgtctgagtcatgttggcttcgtaatctcttacaggagctccactttcctat |
33166043 |
T |
|
| Q |
796 |
ttcccaggctactttggtgtattgtgataatgttaatgccatctaccttgctgttaatccattgca--acatcagcatactaaacatattgagatggata |
893 |
Q |
| |
|
| | ||||||||||||||||||||||| ||||||| |||||||||||| ||| || || |||| | |||| | ||| ||||| ||||| ||||| | |
|
|
| T |
33166044 |
tcctcaggctactttggtgtattgtgacaatgttagtgccatctacctatctggcaaccctgtgcagcatatcaacgtaccaaacacattgaaatggaca |
33166143 |
T |
|
| Q |
894 |
ttcactttgttctggaaaaggtcatgcgtggtcaggcatgtgtccttcatgttccttctcgtcaccagattgc |
966 |
Q |
| |
|
| |||||||| | |||||| || |||||||||||| ||||||| |||||||| ||||| || |||||||| |
|
|
| T |
33166144 |
tacactttgtacgggaaaaagtagctcgtggtcaggcacgtgtcctccatgttccatctcgacatcagattgc |
33166216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 804 - 953
Target Start/End: Complemental strand, 22207868 - 22207719
Alignment:
| Q |
804 |
ctactttggtgtattgtgataatgttaatgccatctaccttgctgttaatccattgcaacatcagcatactaaacatattgagatggatattcactttgt |
903 |
Q |
| |
|
|||||||||| |||||||||||| ||| || |||||| ||| || |||| || | || ||||| | ||||||||| |||||||||| ||||||||||| |
|
|
| T |
22207868 |
ctactttggtatattgtgataatattagtgacatctatctttttggtaattcagtacatcatcaacgcactaaacatgttgagatggacattcactttgt |
22207769 |
T |
|
| Q |
904 |
tctggaaaaggtcatgcgtggtcaggcatgtgtccttcatgttccttctc |
953 |
Q |
| |
|
|| ||||||||| ||||| |||||| |||||||||||||||||| |
|
|
| T |
22207768 |
tcgagaaaaggtcgctcgtggccaggcacacatccttcatgttccttctc |
22207719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 275 - 349
Target Start/End: Complemental strand, 22208206 - 22208132
Alignment:
| Q |
275 |
attattgctcgagcaggcatggcctcatgcaaaccttctgctactccagttgacaccacgcagaagctcagtacc |
349 |
Q |
| |
|
|||||||| || ||||||| ||||| |||||||||||| |||||||| ||||||||| || |||||||||||| |
|
|
| T |
22208206 |
attattgcccgcacaggcatcgcctcgtgcaaaccttctactactccaattgacaccaaacaaaagctcagtacc |
22208132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0134 (Bit Score: 96; Significance: 2e-46; HSPs: 1)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 595 - 966
Target Start/End: Original strand, 40631 - 41002
Alignment:
| Q |
595 |
tgattggggtggatgtcctgacacctgtcattctacttccgtctattgtatgtttcttggtgacaaccttacatcatggtcttccaaacgacaacccacg |
694 |
Q |
| |
|
|||||||||| |||||||||| ||| | | |||||| || | || ||| | ||||||||||||||||||| || |||||||||||| | || ||||| |
|
|
| T |
40631 |
tgattggggtagatgtcctgatacccgacgttctacatctgggtactgtgtttttcttggtgacaaccttatctcttggtcttccaaaaggcagcccact |
40730 |
T |
|
| Q |
695 |
ctttctcactccagtgcagaagccggatacagaggtgttgctaatatggtttttgaatcttgttggcttcgcaatcttctcttggagcttcgctacccac |
794 |
Q |
| |
|
|| |||||||||||||| ||||||| ||| ||||||||||||||| | || | ||| || |||||| |||| || ||| | |||||||||| | || |
|
|
| T |
40731 |
ctctctcactccagtgctgaagccgaatatagaggtgttgctaatgttgtatctgagtcatgttggattcgtaaccttttattggagcttcattttccta |
40830 |
T |
|
| Q |
795 |
tttcccaggctactttggtgtattgtgataatgttaatgccatctaccttgctgttaatccattgcaacatcagcatactaaacatattgagatggatat |
894 |
Q |
| |
|
|| | ||||| ||||||||||||||||| ||||||| |||||| || || ||| |||||| |||||||||||| ||| ||||||||||| ||||| || |
|
|
| T |
40831 |
ttcctcaggccactttggtgtattgtgacaatgttagtgccatttatctctctggtaatcctgtgcaacatcagcgtaccaaacatattgaaatggacat |
40930 |
T |
|
| Q |
895 |
tcactttgttctggaaaaggtcatgcgtggtcaggcatgtgtccttcatgttccttctcgtcaccagattgc |
966 |
Q |
| |
|
||||||||| | ||||||||| ||||||||||| | || ||||||||||| ||||| || |||||||| |
|
|
| T |
40931 |
tcactttgtacgggaaaaggtagcctgtggtcaggcacgcgtacttcatgttccctctcgacatcagattgc |
41002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 73; Significance: 8e-33; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 290 - 946
Target Start/End: Original strand, 31408 - 32064
Alignment:
| Q |
290 |
ggcatggcctcatgcaaaccttctgctactccagttgacaccacgcagaagctcagtaccaccgctgacacttcatacgatgatcccacctgatatcgga |
389 |
Q |
| |
|
|||||||| || || |||||||| || ||||| |||||||||| |||||| ||||| ||| || | |||| ||| || || ||| | ||| ||||||| |
|
|
| T |
31408 |
ggcatggcgtcctgtaaaccttcagccactcctgttgacaccaagcagaaactcagcacctcctccgacatttcttatgaggatacttccttgtatcgga |
31507 |
T |
|
| Q |
390 |
gtcttgcaggagtcttccagtatcttactttcacccggcctgacatctcttatgttgtccggcaggtgtgtcttcgcatgcatgccccttgtactaacca |
489 |
Q |
| |
|
|||||||||| | | | |||||||| || ||||| | |||||||| || |||| ||| | ||| || ||||||| ||||||||||||| | || | || |
|
|
| T |
31508 |
gtcttgcaggggccctacagtatctcaccttcactcaacctgacatatcctatgctgttcagcaagtttgtcttcacatgcatgcccctcgcacggaaca |
31607 |
T |
|
| Q |
490 |
catgcttgccctcaaacgcatcatgtgttatgttcggggaaccctacactacggtttgcatctctatccatcccctattgagaaacttatcttctatact |
589 |
Q |
| |
|
||||||||| || || ||||| || | ||||||| ||| ||| |||| | || | ||| | | ||||| || ||| | ||| ||| ||| ||| |
|
|
| T |
31608 |
catgcttgctcttaagcgcattttgcgctatgttcagggcaccttacattttggactacatttatccccatctcccattacatagcttctctcctacact |
31707 |
T |
|
| Q |
590 |
gatggtgattggggtggatgtcctgacacctgtcattctacttccgtctattgtatgtttcttggtgacaaccttacatcatggtcttccaaacgacaac |
689 |
Q |
| |
|
|| | ||||||||||||||||||||||||| | | |||||| || || || ||| | ||||| ||||||||||||| || |||||||||||| | || | |
|
|
| T |
31708 |
gacgctgattggggtggatgtcctgacaccagacgttctacatctgtatactgtgtttttctaggtgacaaccttatttcttggtcttccaaaaggcagc |
31807 |
T |
|
| Q |
690 |
ccacgctttctcactccagtgcagaagccggatacagaggtgttgctaatatggtttttgaatcttgttggcttcgcaatcttctcttggagcttcgcta |
789 |
Q |
| |
|
| || || || || || ||||| ||||| | ||| |||||||||| ||| | | | |||||| |||| | ||||||||||||| |||| || | | |
|
|
| T |
31808 |
caactctctcccattctagtgctgaagctgaatatcgaggtgttgcaaatgttatctctgaatcgtgttagattcgcaatcttcttctggaactccattt |
31907 |
T |
|
| Q |
790 |
cccactttcccaggctactttggtgtattgtgataatgttaatgccatctaccttgctgttaatccattgcaacatcagcatactaaacatattgagatg |
889 |
Q |
| |
|
|| || | ||||| ||||||||||||||||| ||||||| ||||||||| || ||| |||||| |||| ||||||| || ||||||||||||||| |
|
|
| T |
31908 |
tcctattcctcaggcaactttggtgtattgtgacaatgttagtgccatctatctatctggtaatcctgtgcagcatcagcgcacaaaacatattgagatg |
32007 |
T |
|
| Q |
890 |
gatattcactttgttctggaaaaggtcatgcgtggtcaggcatgtgtccttcatgtt |
946 |
Q |
| |
|
|| ||||| ||||||| ||||||||| ||||||||||| | |||||||||||| |
|
|
| T |
32008 |
gacattcattttgttcgggaaaaggttgctcgtggtcaggctcgcgtccttcatgtt |
32064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 8e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 647 - 966
Target Start/End: Complemental strand, 1586600 - 1586282
Alignment:
| Q |
647 |
tttcttggtgacaaccttacatcatggtcttccaaacgacaacccacgctttctcactccagtgcagaagccggatacagaggtgttgctaatatggttt |
746 |
Q |
| |
|
||||||||||||||||||| || |||||||||||| | ||||| || || ||||| || ||||| ||||| | ||| ||||||||||||||| | || | |
|
|
| T |
1586600 |
tttcttggtgacaaccttatctcttggtcttccaaaaggcaacctactctctctcagtctagtgctgaagctgaatatagaggtgttgctaatgttgtat |
1586501 |
T |
|
| Q |
747 |
ttgaatcttgttggcttcgcaatcttctcttggagcttcgctacccactttcccaggctactttggtgtattgtgataatgttaatgccatctaccttgc |
846 |
Q |
| |
|
||| ||||||||| |||| |||||| | |||| |||| | ||| || | || | ||||||||||||||||| ||||||| || |||||| || | |
|
|
| T |
1586500 |
atgagtcttgttggattcgtaatcttttactggaacttcatttccctattcctcatggcactttggtgtattgtgacaatgttagtgtcatctatctctc |
1586401 |
T |
|
| Q |
847 |
tgttaatccattgcaacatcagcatactaaacatattgagatggatattcactttgttctggaaaaggtcatgcgtggtcaggcatgtgtccttcatgtt |
946 |
Q |
| |
|
|| ||| || |||||||||| | ||| || |||||||| ||||| ||||||||||| |||||||| || |||||||||||| | || ||||||||| |
|
|
| T |
1586400 |
tggtaaccctgtgcaacatcaacgtaccaatcatattgaaatggacattcactttgtactggaaaa-gtagctcgtggtcaggcacgcgtacttcatgtt |
1586302 |
T |
|
| Q |
947 |
ccttctcgtcaccagattgc |
966 |
Q |
| |
|
|||||||| || |||||||| |
|
|
| T |
1586301 |
ccttctcgacatcagattgc |
1586282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 818 - 903
Target Start/End: Original strand, 10260683 - 10260768
Alignment:
| Q |
818 |
tgtgataatgttaatgccatctaccttgctgttaatccattgcaacatcagcatactaaacatattgagatggatattcactttgt |
903 |
Q |
| |
|
||||| ||||||| ||| |||||||| ||| ||||| | |||||||||| |||||| |||||||||||||| ||||||||||| |
|
|
| T |
10260683 |
tgtgacaatgttagtgctatctacctctctggtaatcttgtacaacatcagcgtactaagcatattgagatggacattcactttgt |
10260768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0655 (Bit Score: 59; Significance: 2e-24; HSPs: 1)
Name: scaffold0655
Description:
Target: scaffold0655; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 576 - 966
Target Start/End: Complemental strand, 6123 - 5733
Alignment:
| Q |
576 |
ttatcttctatactgatggtgattggggtggatgtcctgacacctgtcattctacttccgtctattgtatgtttcttggtgacaaccttacatcatggtc |
675 |
Q |
| |
|
|||||| ||| ||||| | ||||||||||||||||| ||||||| | ||||| || | |||||| | ||||||||||||||||||| || ||||| |
|
|
| T |
6123 |
ttatctcctacactgacgttgattggggtggatgtcttgacaccagacattccacagctcggtattgtgtttttcttggtgacaaccttatctcttggtc |
6024 |
T |
|
| Q |
676 |
ttccaaacgacaacccacgctttctcactccagtgcagaagccggatacagaggtgttgctaatatggtttttgaatcttgttggcttcgcaatcttctc |
775 |
Q |
| |
|
||||||| | || ||||| || |||| || |||| ||||||| ||| ||||||||||||||| | || | ||| || |||||| || | || ||| | |
|
|
| T |
6023 |
ttccaaaaggcagcccactctctctcggtctagtgttgaagccgaatatagaggtgttgctaatgttgtatctgagtcatgttggatttgtaacctttta |
5924 |
T |
|
| Q |
776 |
ttggagcttcgctacccactttcccaggctactttggtgtattgtgataatgttaatgccatctaccttgctgttaatccattgcaacatcagcatacta |
875 |
Q |
| |
|
|||| |||| | ||| || | || || ||||||||||||||||| ||||||| || |||||| || ||| ||||| |||||||||| | ||| | |
|
|
| T |
5923 |
ctggaacttcatttccctattcctcaagccactttggtgtattgtgacaatgttagtgtcatctatctctctggtaatcatgtgcaacatcaacgtacca |
5824 |
T |
|
| Q |
876 |
aacatattgagatggatattcactttgttctggaaaaggtcatgcgtggtcaggcatgtgtccttcatgttccttctcgtcaccagattgc |
966 |
Q |
| |
|
| |||||||| ||||| ||||||||||| | |||||| || |||||| ||||| | || ||||||||||||||||| || |||||||| |
|
|
| T |
5823 |
agcatattgaaatggacattcactttgtacgggaaaaagtagctcgtggtgaggcacgcgtacttcatgttccttctcgacatcagattgc |
5733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0169 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0169
Description:
Target: scaffold0169; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 801 - 905
Target Start/End: Original strand, 22228 - 22332
Alignment:
| Q |
801 |
aggctactttggtgtattgtgataatgttaatgccatctaccttgctgttaatccattgcaacatcagcatactaaacatattgagatggatattcactt |
900 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||| || || || ||| ||||| | |||||||||| ||||||||||| |||||||||||||| || |
|
|
| T |
22228 |
aggctagtttggtgtattgtgataatgttagtgcgatttatctctctggaaatccggttcaacatcagcgcactaaacatatcgagatggatattcattt |
22327 |
T |
|
| Q |
901 |
tgttc |
905 |
Q |
| |
|
||||| |
|
|
| T |
22328 |
tgttc |
22332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 801 - 905
Target Start/End: Original strand, 1853695 - 1853799
Alignment:
| Q |
801 |
aggctactttggtgtattgtgataatgttaatgccatctaccttgctgttaatccattgcaacatcagcatactaaacatattgagatggatattcactt |
900 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||| || || || ||| ||||| | |||||||||| ||||||||||| |||||||||||||| || |
|
|
| T |
1853695 |
aggctagtttggtgtattgtgataatgttagtgcgatttatctctctggaaatccggttcaacatcagcgcactaaacatatcgagatggatattcattt |
1853794 |
T |
|
| Q |
901 |
tgttc |
905 |
Q |
| |
|
||||| |
|
|
| T |
1853795 |
tgttc |
1853799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 801 - 905
Target Start/End: Original strand, 36650144 - 36650248
Alignment:
| Q |
801 |
aggctactttggtgtattgtgataatgttaatgccatctaccttgctgttaatccattgcaacatcagcatactaaacatattgagatggatattcactt |
900 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||| || || || ||| ||||| | |||||||||| ||||||||||| |||||||||||||| || |
|
|
| T |
36650144 |
aggctagtttggtgtattgtgataatgttagtgcgatttatctctctggaaatccggttcaacatcagcgcactaaacatatcgagatggatattcattt |
36650243 |
T |
|
| Q |
901 |
tgttc |
905 |
Q |
| |
|
||||| |
|
|
| T |
36650244 |
tgttc |
36650248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 810 - 973
Target Start/End: Complemental strand, 1546125 - 1545962
Alignment:
| Q |
810 |
tggtgtattgtgataatgttaatgccatctaccttgctgttaatccattgcaacatcagcatactaaacatattgagatggatattcactttgttctgga |
909 |
Q |
| |
|
|||| |||||||| ||||||| ||||||||| || ||| |||||| ||| ||||||| ||| ||||||||||||||||| ||||| ||||| | ||| |
|
|
| T |
1546125 |
tggtatattgtgacaatgttagtgccatctatctatctggtaatcctgcgcagcatcagcgtaccaaacatattgagatggacattcattttgtacggga |
1546026 |
T |
|
| Q |
910 |
aaaggtcatgcgtggtcaggcatgtgtccttcatgttccttctcgtcaccagattgctgacatc |
973 |
Q |
| |
|
||| || | ||||||||||| | || ||||||||||| || | || |||||||| |||||| |
|
|
| T |
1546025 |
aaaagtagtcggtggtcaggcacgcgtacttcatgttccctccagacatcagattgcagacatc |
1545962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 801 - 897
Target Start/End: Original strand, 7084806 - 7084902
Alignment:
| Q |
801 |
aggctactttggtgtattgtgataatgttaatgccatctaccttgctgttaatccattgcaacatcagcatactaaacatattgagatggatattca |
897 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||| || || || ||| ||||| | |||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
7084806 |
aggctagtttggtgtattgtgataatgttagtgcgatttatctctctggaaatccggttcaacatcagcgcactaaacatatcgagatggatattca |
7084902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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