View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4520_low_13 (Length: 307)
Name: NF4520_low_13
Description: NF4520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4520_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 53117982 - 53118255
Alignment:
| Q |
18 |
gaataaaaaagttgttaacttcatgcttattgacgaacaattaaaaacgcttcgtcagacctggttttgatctgtgccactttgccaaaggactcctgat |
117 |
Q |
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| T |
53117982 |
gaataaaaaagttgttaacttcatgcttattgacgaacaattaaaaacgcttcgtcagacctggttttgatctgtgccactttgccaaaggactcatgat |
53118081 |
T |
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| Q |
118 |
ctcgggatgatttatgatgaatgtaggactgacacgtttttcttccaaaatgtagcttacaagctgcaatatggaccaaacttagaatcataaccacaac |
217 |
Q |
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| T |
53118082 |
ctcgggatgatttatgatgaatgtaggactgacacgtgtttcttccaaaatgtagcttacaagctgcaatat-gaccaaacttagaatcataaccacaac |
53118180 |
T |
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| Q |
218 |
ttattaagcaaatgactgatattgtgagtgaagaatgttccataattctatgcaaagcagatcagatgacattgt |
292 |
Q |
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| T |
53118181 |
ttattaagcaaatgactgatattgtgagtgaagaatgttccataattctatgcaaagcagatcagatgacattgt |
53118255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 35 - 290
Target Start/End: Original strand, 53108673 - 53108928
Alignment:
| Q |
35 |
acttcatgcttattgacgaacaattaaaaacgcttcgtcagacctggttttgatctgtgccactttgccaaaggactcctgatctcgggatgatttatga |
134 |
Q |
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| T |
53108673 |
acttcatgcttattgacgaacaattcaaaacgttcggtcaggcctggttttaatctgtgccactttgccaaaggactcatgatctcgggatgatttatga |
53108772 |
T |
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| Q |
135 |
tgaatgtaggactgacacgtttttcttccaaaatgtagcttacaagctgcaatatggaccaaacttagaatca-taaccacaacttattaagcaaatgac |
233 |
Q |
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| T |
53108773 |
tgaatgtaggattgacacatgtttcttccaaaaagtgtccgacaagctgcaatgt-gaccaaacttagaatcattaaccacagcttattaatcaaatgac |
53108871 |
T |
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| Q |
234 |
tgatattgtgagtgaagaatgttccataattctatgcaaagcagatcagatgacatt |
290 |
Q |
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| T |
53108872 |
taatattgtgagttaagaatgtcccatatttctatgcaaagcagatcagatcacatt |
53108928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 71 - 190
Target Start/End: Original strand, 53113813 - 53113932
Alignment:
| Q |
71 |
gtcagacctggttttgatctgtgccactttgccaaaggactcctgatctcgggatgatttatgatgaatgtaggactgacacgtttttcttccaaaatgt |
170 |
Q |
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| T |
53113813 |
gtcaggcctggtttcgttctgtgccactttgccaaagggctcatgatctcgggatgatttatgatgaatgtaggattgacacatgtttcttccaaaaagt |
53113912 |
T |
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| Q |
171 |
agcttacaagctgcaatatg |
190 |
Q |
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| T |
53113913 |
ggcctgcaagctgaaatatg |
53113932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 35 - 183
Target Start/End: Original strand, 53126475 - 53126623
Alignment:
| Q |
35 |
acttcatgcttattgacgaacaattaaaaacgcttcgtcagacctggttttgatctgtgccactttgccaaaggactcctgatctcgggatgatttatga |
134 |
Q |
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||||||||||||||||| ||||||| |||||||| ||||| ||||||||| ||||||| |||| |||||||||||| | || ||||| ||||| |||| |
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| T |
53126475 |
acttcatgcttattgacaaacaattcaaaacgctcggtcaggcctggtttttctctgtgcgacttggccaaaggactcattatttcggggtgattcatga |
53126574 |
T |
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| Q |
135 |
tgaatgtaggactgacacgtttttcttccaaaatgtagcttacaagctg |
183 |
Q |
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| T |
53126575 |
tgaatgtaggattgacacacgtttcttccaaaaagtggcctacaagctg |
53126623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 53 - 167
Target Start/End: Complemental strand, 15841201 - 15841087
Alignment:
| Q |
53 |
aacaattaaaaacgcttcgtcagacctggttttgatctgtgccactttgccaaaggactcctgatctcgggatgatttatgatgaatgtaggactgacac |
152 |
Q |
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||||||| |||||| | ||||| |||||||||| |||||||||||| |||||||||||| | ||||| || || |||||||||||||||||| |||||| |
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| T |
15841201 |
aacaattcaaaacgttcagtcaggcctggttttgttctgtgccacttcgccaaaggactcattatctctgggtggtttatgatgaatgtaggattgacac |
15841102 |
T |
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| Q |
153 |
gtttttcttccaaaa |
167 |
Q |
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| T |
15841101 |
atgtttcctccaaaa |
15841087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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