View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4520_low_17 (Length: 266)
Name: NF4520_low_17
Description: NF4520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4520_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 28 - 248
Target Start/End: Complemental strand, 6135386 - 6135166
Alignment:
| Q |
28 |
gtatacatgaaatcctagcaagttttacgtattcactgcaaaatattctaagtaaacacgaaaatgcagcatctaaaattttcagttgcattattgattt |
127 |
Q |
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| T |
6135386 |
gtatacatgaaatcctagcaagttttacgcattcactgcaaaatattctaagtaaacatgaaaatgcagcatctaaaattttcagttgcattattgattt |
6135287 |
T |
|
| Q |
128 |
gttgagcattaaattaaataagttatacaaacctaaatgtatgcatattgattcaaggtgaaggctatatcgtgcaatattgtttgtgtgcttgatcttg |
227 |
Q |
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| T |
6135286 |
gttgagcattaaattaaataagttatacaaacctaaatgtatgcatattgattcaaggtgaaggctatatcgtgcaatattgttagtgtgtttgatcttg |
6135187 |
T |
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| Q |
228 |
tacaatttggagtgtcattag |
248 |
Q |
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| T |
6135186 |
tacaatttggagtgtcattag |
6135166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 6122141 - 6122081
Alignment:
| Q |
140 |
attaaataagttatacaaacctaaatgtatgcatattgattcaaggtgaaggctatatcgt |
200 |
Q |
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|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6122141 |
attaaacaagtcatacaaacctaaatgtatgcatattgattcaaggtgaaggctatatcgt |
6122081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 6122062 - 6122021
Alignment:
| Q |
203 |
aatattgtttgtgtgcttgatcttgtacaatttggagtgtca |
244 |
Q |
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| T |
6122062 |
aatattgttagtgtgcttgatcttgtacaatttggagtgtca |
6122021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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