View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4520_low_2 (Length: 555)
Name: NF4520_low_2
Description: NF4520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4520_low_2 |
 | |
|
| [»] chr7 (3 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 437; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 10 - 555
Target Start/End: Complemental strand, 27430907 - 27430366
Alignment:
| Q |
10 |
catcatcattgtcatcatatccactacatgtgatgaaaggactaggttgtaattatgccctctcatttttatttattttgttgtttcctctagttattat |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27430907 |
catcatcattgtcatcatatccactacatgtgatgaaaggactaggttgtaattatgccctctcatttttatttattttgttgtttcctctagttattat |
27430808 |
T |
|
| Q |
110 |
ggttttggctgacacagtaaaattatttgattgtttcatagtcctacttggttttgagnnnnnnnggtacaattagaaaacttatccaattatgtaatta |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
27430807 |
ggttttggctgacacagtaaaattatttgattgtttcatagtcctacttggttttgagtttttttggtacaattagaaaacttatccaattatgtaatta |
27430708 |
T |
|
| Q |
210 |
tttttcagaaaagtttcacaaacatgggagaaggagtctgatcgtcctgtggaagatggtcatcaatggagaaagtatgggcnnnnnnngatcttgcaca |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27430707 |
tttttcagaaaagtttcacaaacatgggagaaggagtctgatcgtcctgtggaagatggtcatcaatggagaaagtatgggcaaaaaaagatcttgcaca |
27430608 |
T |
|
| Q |
310 |
ccgattttccaaggnnnnnnnnnnnnnnnttttacgagtttaattaagcactaacttcactatttgaacacattatcatgttaattattgattttcaaat |
409 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27430607 |
ccgattttccaagg------tatatatatttttacgagtttaattaagcacaaacttcactatttgaacaaattatcatgttaattattgattttcaaat |
27430514 |
T |
|
| Q |
410 |
taattaattttcactatgggaatatatatttatt--tatatgctttgcaggaactattacaggtgcactcacaaacatgatcaaggttgcaaagcaacaa |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27430513 |
taattaattttcactatgggaatatatatttatttatatatgctttgcaggaactattacaggtgcactcacaaacatgatcaaggttgcaaagcaacaa |
27430414 |
T |
|
| Q |
508 |
aacaagtgcaacaaattcaagaggatccacctctttacaaaacaacct |
555 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27430413 |
aacaagtgcaacaaattcaagaggatccacctctttacaaaacaacct |
27430366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 451 - 555
Target Start/End: Complemental strand, 27447717 - 27447613
Alignment:
| Q |
451 |
tttgcaggaactattacaggtgcactcacaaacatgatcaaggttgcaaagcaacaaaacaagtgcaacaaattcaagaggatccacctctttacaaaac |
550 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||| ||| || |
|
|
| T |
27447717 |
tttgcaggaactattacagatgcactcacaaaaatgatcaaggttgcaaagcaataaaacaagtccaaagaattcaagaggatccacctcttcacaggac |
27447618 |
T |
|
| Q |
551 |
aacct |
555 |
Q |
| |
|
||||| |
|
|
| T |
27447617 |
aacct |
27447613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 215 - 323
Target Start/End: Complemental strand, 27448668 - 27448560
Alignment:
| Q |
215 |
cagaaaagtttcacaaacatgggagaaggagtctgatcgtcctgtggaagatggtcatcaatggagaaagtatgggcnnnnnnngatcttgcacaccgat |
314 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| | |||| |||||||||||||| |||||||||||||| | |||||||||||||||| |
|
|
| T |
27448668 |
cagaaaaatttcacaaacatgggagaaggagtctgaacagcctgaagaagatggtcatcagtggagaaagtatggccaaaaaaagatcttgcacaccgat |
27448569 |
T |
|
| Q |
315 |
tttccaagg |
323 |
Q |
| |
|
||||||||| |
|
|
| T |
27448568 |
tttccaagg |
27448560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University