View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4520_low_4 (Length: 476)
Name: NF4520_low_4
Description: NF4520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4520_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Original strand, 41073909 - 41074364
Alignment:
| Q |
1 |
caccattcaggtagctaataatttttagaattcactgtaattatacgtgttggtgccagacac-atacatgtccaacaccggacacgcctaatctaagaa |
99 |
Q |
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| T |
41073909 |
caccattcaggtagcaaataatttttagaattcact-----tatacgtgttggtgtcagacatgatacatatccaacaccggacacgtctaatctaagaa |
41074003 |
T |
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| Q |
100 |
gcttccgtacttcatagatca---tcatccttctcaaatcattacttgtgtcctaggtcataggcttagaagttttaagtcatggcttgcttaagagtga |
196 |
Q |
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| T |
41074004 |
gcgtccgtacttcatagatcatcatcatccttctcaaatcattacttgtgtcctaggtcatacgcttagaagttttaagtcatggcttgcttaagagtga |
41074103 |
T |
|
| Q |
197 |
aataagtagattagtgagagatttaattttttcaatcataaatattcatcactaatttttccttttccattggtgacattgagagttgtaatgtcccgat |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41074104 |
aataagtagattagtgagagatttaattttttcaatcataaatattcatcactaatttttccttttccattggtgacattgagagttgtaatgtcccgat |
41074203 |
T |
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| Q |
297 |
atttgataggaagagtgatattgagtgtgatgtcatcaaattcatttattttctcacattattttacttgtgtcgacatgtcgttttttagtggcgtttt |
396 |
Q |
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| T |
41074204 |
atttgataggaagagtgatattgagtgtgatgtcatcaaattcatttattttctcacattattttacttgtgtcgacatgtcgttttttagtggcgtttt |
41074303 |
T |
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| Q |
397 |
ttggtgtacatgtttgtgtccctaggtcatatgtttaaaaggttatcatagcttgctttggat |
459 |
Q |
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| T |
41074304 |
ttggtgt--atgtttgtgtccctaggtcatatgtttaaaagtttatcataacttgctttggat |
41074364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 41074387 - 41074429
Alignment:
| Q |
187 |
ttaagagtgaaataagtagattagtgagagatttaattttttc |
229 |
Q |
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| T |
41074387 |
ttaagagtgaaataagtagaattgtgagagatttaattttttc |
41074429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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