View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4520_low_7 (Length: 404)
Name: NF4520_low_7
Description: NF4520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4520_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Original strand, 41708581 - 41708952
Alignment:
| Q |
18 |
tcaatctcatattcactctcttcatctctgatttcaaagttagtaatcaaaggaataccaagagcctcaatattcttcttcattgatttctccaacaact |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41708581 |
tcaatctcatattcactctcttcatctctgatttcaaagttagtaatcaaaggaataccaagagcctcaatattcttcttcattgatttctccaataact |
41708680 |
T |
|
| Q |
118 |
cactttttctcaccccatatgcatttttgctatcattcacccatttctccttcaactttctcagttcacaaacttctaactccaattcattgttcttctt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41708681 |
cactttttctcaccccatatgcatttttgctatcattcacccatttctccttcaactttctcagttcacaaacttctaactccaattcattgttcttctt |
41708780 |
T |
|
| Q |
218 |
tcttagctgtccaatgctgtctttttcagctaagtttgttttcttaacttccttcaataacttttcataattattttgtgctcttttccctttttcacac |
317 |
Q |
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|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41708781 |
tcttagctctccaatggtgtctttttcagctaagtttgttttcttaacttccttcaataacttttcataattattttgtgctcttttccctttttcacac |
41708880 |
T |
|
| Q |
318 |
agttcctctctttttctcaaatcttcctcggcttcaaacctcannnnnnnctccatttcaaccttctcttga |
389 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
41708881 |
agttcctctctttttctcaaatcttcctcggcttgaaacctcgtttttttctccatttcaaccttctcttga |
41708952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Original strand, 41717653 - 41718024
Alignment:
| Q |
18 |
tcaatctcatattcactctcttcatctctgatttcaaagttagtaatcaaaggaataccaagagcctcaatattcttcttcattgatttctccaacaact |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41717653 |
tcaatctcatattcactctcttcatctctgatttcaaagttagtaatcaaaggaataccaagagcctcaatattcttcttcattgatttctccaataact |
41717752 |
T |
|
| Q |
118 |
cactttttctcaccccatatgcatttttgctatcattcacccatttctccttcaactttctcagttcacaaacttctaactccaattcattgttcttctt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41717753 |
cactttttctcaccccatatgcatttttgctatcattcacccatttctccttcaactttctcagttcacaaacttctaactccaattcattgttcttctt |
41717852 |
T |
|
| Q |
218 |
tcttagctgtccaatgctgtctttttcagctaagtttgttttcttaacttccttcaataacttttcataattattttgtgctcttttccctttttcacac |
317 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41717853 |
tcttagctctccaatggtgtctttttcagctaagtttgttttcttaacttccttcaataacttttcataattattttgtgctcttttccctttttcacac |
41717952 |
T |
|
| Q |
318 |
agttcctctctttttctcaaatcttcctcggcttcaaacctcannnnnnnctccatttcaaccttctcttga |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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|
| T |
41717953 |
agttcctctctttttctcaaatcttcctcggcttgaaaccttgtttttttctccatttcaaccttctcttga |
41718024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 165 - 359
Target Start/End: Original strand, 41686347 - 41686544
Alignment:
| Q |
165 |
tccttcaactttctcagttcacaaacttctaactccaattcattgttcttctttcttagctgtccaatgctgtctttttcagctaagtttgtttt---ct |
261 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||| ||||||| ||||| | ||| | || | ||||| || |
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|
| T |
41686347 |
tccttcaactttctcagctcacgaacttctaactccaattcactgttcttctttcttagctctccaatgatgtctctatcacccaaactagttttttcct |
41686446 |
T |
|
| Q |
262 |
taacttccttcaataacttttcataattattttgtgctcttttccctttttcacacagttcctctctttttctcaaatcttcctcggcttcaaacctc |
359 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
41686447 |
taacttccttcaacaatttttcataattattttgtgctcttatccctctttcacaaagttcctctctttttctcaaatcttcctcagcttgaaacctc |
41686544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 144 - 360
Target Start/End: Original strand, 41659334 - 41659550
Alignment:
| Q |
144 |
ttgctatcattcacccatttctccttcaactttctcagttcacaaacttctaactccaattcattgttcttctttcttagctgtccaatgctgtcttttt |
243 |
Q |
| |
|
|||||||||| |||||| || ||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||| || |||| ||||| || |
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| T |
41659334 |
ttgctatcatccacccactttcgcttcaactttctcagctcacaaacttccaactccaattcattattcttctttcttagctctctaatgatgtctcctt |
41659433 |
T |
|
| Q |
244 |
cagctaagtttgttttcttaacttccttcaataacttttcataattattttgtgctcttttccctttttcacacagttcctctctttttctcaaatcttc |
343 |
Q |
| |
|
|| |||| | |||||||||||||||| ||| || ||||||||||| | ||||| ||||| ||| |||| || |||||||||||||||||||||||||| |
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| T |
41659434 |
caactaaactagttttcttaacttcctccaacaatgtttcataattactctgtgccctttttcctctttcgcatagttcctctctttttctcaaatcttc |
41659533 |
T |
|
| Q |
344 |
ctcggcttcaaacctca |
360 |
Q |
| |
|
|| |||| |||||||| |
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|
| T |
41659534 |
ttcagcttgaaacctca |
41659550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 144 - 346
Target Start/End: Complemental strand, 41688006 - 41687801
Alignment:
| Q |
144 |
ttgctatcattcacccatttctccttcaactttctcagttcacaaacttctaactccaattcattgttcttctttcttagctgtccaatgctgtcttttt |
243 |
Q |
| |
|
|||||||||| |||||||| || |||||||||||||| ||||||||||| |||||||||||| ||| ||||||||| ||| ||| ||| ||||| | | |
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|
| T |
41688006 |
ttgctatcatcgacccatttttcattcaactttctcagctcacaaacttcgaactccaattcaatgtctttctttcttggctttccgatgttgtctctct |
41687907 |
T |
|
| Q |
244 |
cagctaagtttgtttt---cttaacttccttcaataacttttcataattattttgtgctcttttccctttttcacacagttcctctctttttctcaaatc |
340 |
Q |
| |
|
|| || | ||||| || ||||||||||| || ||||||||| | |||||||||||||||| ||||||| |||||||||||||| |||| ||| |
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|
| T |
41687906 |
caatcaaactagttttttgtttgacttccttcaacaatgcttcataattttgttgtgctcttttccctctttcacatagttcctctcttttcctcacatc |
41687807 |
T |
|
| Q |
341 |
ttcctc |
346 |
Q |
| |
|
|||||| |
|
|
| T |
41687806 |
ttcctc |
41687801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 255 - 346
Target Start/End: Complemental strand, 14682517 - 14682426
Alignment:
| Q |
255 |
gttttcttaacttccttcaataacttttcataattattttgtgctcttttccctttttcacacagttcctctctttttctcaaatcttcctc |
346 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||| |||||| |||||||| | ||||||| |||||| || || ||||| |||||||| |
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|
| T |
14682517 |
gttttcttaacttccttcaacaatttttcataattattctgtgcttttttccctctctcacacatttcctccctcttcctcaattcttcctc |
14682426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 145
Target Start/End: Complemental strand, 14682687 - 14682624
Alignment:
| Q |
79 |
gagcctcaatattcttcttcattgatttctccaacaactcactttttctcaccccatatgcattttt |
145 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||| ||| |||||||| |||||||||| |
|
|
| T |
14682687 |
gagcctcacaattcttcttcattgatttctc---caactcactatttttcaccccaaatgcattttt |
14682624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 351
Target Start/End: Complemental strand, 14691033 - 14690869
Alignment:
| Q |
187 |
aaacttctaactccaattcattgttcttctttcttagctgtccaatgctgtctttttcagctaagtttgttttcttaacttccttcaataacttttcata |
286 |
Q |
| |
|
||||||| |||||||||||||| || ||| || |||||| | ||||| ||| ||||| |||| | ||||||||| |||| |||| | |||||||| |
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|
| T |
14691033 |
aaacttccaactccaattcattattattcatttttagctcaacgatgctttctctttcacctaaactatttttcttaatttccatcaacgatttttcata |
14690934 |
T |
|
| Q |
287 |
attattttgtgctcttttccctttttcacacagttcctctctttttctcaaatcttcctcggctt |
351 |
Q |
| |
|
|||||| ||||| |||| || | |||||||||||||| || || ||||||||||||| |||| |
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|
| T |
14690933 |
attattctgtgccattttagctctctcacacagttcctcactcttcttcaaatcttcctcagctt |
14690869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 220
Target Start/End: Complemental strand, 2439189 - 2439118
Alignment:
| Q |
149 |
atcattcacccatttctccttcaactttctcagttcacaaacttctaactccaattcattgttcttctttct |
220 |
Q |
| |
|
||||| ||||||||| ||| |||||||||||| |||||| | || |||||||||| ||||||||||||||| |
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|
| T |
2439189 |
atcatccacccatttttccaccaactttctcagctcacaagcatccaactccaatttattgttcttctttct |
2439118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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