View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4521-Insertion-2 (Length: 532)
Name: NF4521-Insertion-2
Description: NF4521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4521-Insertion-2 |
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| [»] chr4 (13 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 183 - 532
Target Start/End: Complemental strand, 7130333 - 7129995
Alignment:
| Q |
183 |
caaagatcttagacatctcgagtggaataggaaaaatggctaatcttcaaacactgacacagtttgtatctgataagaggtttgcagtgcttgatcgcct |
282 |
Q |
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| T |
7130333 |
caaagatcttagacatctcgagtggaataggaaaaatgactaatcttcaaacactgacacagtttgtatctgataagaggtttgaagtgcttgatcgctt |
7130234 |
T |
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| Q |
283 |
atagtcgatcgctcatcaaccttttctccatcactcagagacatagatcttgttgaatttaataggggttcttgtagtttaagagtcttgaaaacttagg |
382 |
Q |
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| T |
7130233 |
atagtcgatagctcatcaaccttttctccatcactcagagacatagatcttgttgaatttaataggggttgttgtagtttaagagtcttgaaaactt-gg |
7130135 |
T |
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| Q |
383 |
gattcatgattgttatttgttnnnnnnntgtactgattgctaagcattattctaattccaattaacagtaatgctttttgcataggtctcacatcttttg |
482 |
Q |
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| T |
7130134 |
gattcatgattgttatttgttaaaaaaatgtactgattgctaagcattatt--------------cagtaattctttttgcataggtctcacatcttttg |
7130049 |
T |
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| Q |
483 |
ttagctcacccttgtattgaatttgtgacccc----atgactcatagtatttta |
532 |
Q |
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| T |
7130048 |
ttagctcacccttgtattgaatttgtgacccccatgatgactcatagtatttta |
7129995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 8 - 182
Target Start/End: Complemental strand, 7130651 - 7130477
Alignment:
| Q |
8 |
atttaaagttgtaaattttgcttttgtatattaatcatcaattattgttgcttgcttttgccagtaagatgattttgtatatcaatcatcaattactgtt |
107 |
Q |
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| T |
7130651 |
atttaaagttgtaaactttgcttttgtatatcaatcatcaattattgttgcttacttttgccagtaagatgattttgtatatcaatcatcaattactgtt |
7130552 |
T |
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| Q |
108 |
ccttaaataattattgctattactttttctgttttggcgttattatctataaagaaataaacaagcatgatttcc |
182 |
Q |
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| T |
7130551 |
ccttaaataattattgctattactttttctgttttggcgttattatctataaagaaataaacaagcatgatttcc |
7130477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 419 - 522
Target Start/End: Complemental strand, 7723357 - 7723252
Alignment:
| Q |
419 |
ttgctaagcattattctaattccaattaacagta-atgctttttgcatagg-tctcacatcttttgttagctcacccttgtattgaatttgtgaccccat |
516 |
Q |
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| T |
7723357 |
ttgctaagcattattctaattccaattaacagtatatgctttttgcatagggtctcacatcttttgttagctcacttttgtattgaatttgtgacctcat |
7723258 |
T |
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| Q |
517 |
gactca |
522 |
Q |
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|||||| |
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| T |
7723257 |
gactca |
7723252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 426 - 524
Target Start/End: Original strand, 7519109 - 7519208
Alignment:
| Q |
426 |
gcattattctaattccaattaacagtaa-tgctttttgcataggtctcacatcttttgttagctcacccttgtattgaatttgtgaccccatgactcata |
524 |
Q |
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|||||||||||| |||| |||| ||||| |||||||||||||||||||||||||| |||||| ||||| |||| | |||||||||||||||||| |||| |
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| T |
7519109 |
gcattattctaaatccatttaatagtaaatgctttttgcataggtctcacatcttatgttagttcaccattgttctaaatttgtgaccccatgacccata |
7519208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 474 - 531
Target Start/End: Original strand, 7502091 - 7502148
Alignment:
| Q |
474 |
catcttttgttagctcacccttgtattgaatttgtgaccccatgactcatagtatttt |
531 |
Q |
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| T |
7502091 |
catcttttgttagttcacctttgtattgaatttgtgaccccatgactcatagtgtttt |
7502148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 474 - 531
Target Start/End: Original strand, 7493115 - 7493172
Alignment:
| Q |
474 |
catcttttgttagctcacccttgtattgaatttgtgaccccatgactcatagtatttt |
531 |
Q |
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| T |
7493115 |
catcttttgttagttcacctttgtattgaatttgtgaccgcatgactcatagtgtttt |
7493172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 204 - 249
Target Start/End: Original strand, 7529588 - 7529633
Alignment:
| Q |
204 |
gtggaataggaaaaatggctaatcttcaaacactgacacagtttgt |
249 |
Q |
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| T |
7529588 |
gtggaataggaaagatgactaatcttcaaacactgacacagtttgt |
7529633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 7720943 - 7720899
Alignment:
| Q |
205 |
tggaataggaaaaatggctaatcttcaaacactgacacagtttgt |
249 |
Q |
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| T |
7720943 |
tggaataggaaagatgactaatcttcaaacactgacacagtttgt |
7720899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 7521524 - 7521568
Alignment:
| Q |
205 |
tggaataggaaaaatggctaatcttcaaacactgacacagtttgt |
249 |
Q |
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| T |
7521524 |
tggaataggaaagatgactaatcttcaaacactgacacactttgt |
7521568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 7717113 - 7717069
Alignment:
| Q |
205 |
tggaataggaaaaatggctaatcttcaaacactgacacagtttgt |
249 |
Q |
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| T |
7717113 |
tggaataggaaagatgactaagcttcaaacactgacacagtttgt |
7717069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 249
Target Start/End: Complemental strand, 7127669 - 7127624
Alignment:
| Q |
204 |
gtggaataggaaaaatggctaatcttcaaacactgacacagtttgt |
249 |
Q |
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||||||||||||| ||| |||||||||||||| ||||||| ||||| |
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| T |
7127669 |
gtggaataggaaagatgactaatcttcaaacattgacacactttgt |
7127624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 249
Target Start/End: Original strand, 7483466 - 7483511
Alignment:
| Q |
204 |
gtggaataggaaaaatggctaatcttcaaacactgacacagtttgt |
249 |
Q |
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| T |
7483466 |
gtggaataggaaagatgactaatcttcaaacacttacacaatttgt |
7483511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 398
Target Start/End: Complemental strand, 7723422 - 7723382
Alignment:
| Q |
358 |
agtttaagagtcttgaaaacttagggattcatgattgttat |
398 |
Q |
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| T |
7723422 |
agtttaacagtcttgaaaacttaaggattcaagattgttat |
7723382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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