View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4521-Insertion-7 (Length: 252)
Name: NF4521-Insertion-7
Description: NF4521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4521-Insertion-7 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 7 - 252
Target Start/End: Original strand, 41658019 - 41658264
Alignment:
| Q |
7 |
acattgtttatttacaacgatttttgaatatgacgaaaacctgaggtctgaatgccttcccaacataatatcctcacaggttgtgactgtaggaaatatt |
106 |
Q |
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| T |
41658019 |
acattgtttatttacaacgatttttgaatatgacgaaaacctgaggtctgaatgccttcccaacataatatcctcacaggttgtgactgtaggaaatatt |
41658118 |
T |
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| Q |
107 |
caaggaggtggtgcattcaatgttattccaaacttcgtcacaattggtggcaccttccgagcatttttgagagaaagcttcacgcaactaagacaacgta |
206 |
Q |
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| T |
41658119 |
caaggaggtggtgcattcaatgttattccaaacttcgtcacaattggtggcaccttccgagcatttttgagagaaagcttcacgcaactaagacaacgta |
41658218 |
T |
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| Q |
207 |
ttgagcaggtctgttacaaagaagaacaaattcacaataatctcta |
252 |
Q |
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| T |
41658219 |
ttgagcaggtctgttacaaagaagaacaaattcacaataatctcta |
41658264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 7 - 244
Target Start/End: Complemental strand, 43211408 - 43211171
Alignment:
| Q |
7 |
acattgtttatttacaacgatttttgaatatgacgaaaacctgaggtctgaatgccttcccaacataatatcctcacaggttgtgactgtaggaaatatt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | || |||||||| ||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
43211408 |
acattgtttatttacaacgatttttgaatatgacgaaaacataagatctgaatgtcttcctaacctaatatcctcacaggttgtgactgtaggaaatatt |
43211309 |
T |
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| Q |
107 |
caaggaggtggtgcattcaatgttattccaaacttcgtcacaattggtggcaccttccgagcatttttgagagaaagcttcacgcaactaagacaacgta |
206 |
Q |
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| T |
43211308 |
caaggaggtggtgcagtcaatgttattccagactccgtcacaattggtggcaccttccgagcatttttgagagaaagcctcacgcaactaagacaccgta |
43211209 |
T |
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| Q |
207 |
ttgagcaggtctgttacaaagaagaacaaattcacaat |
244 |
Q |
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| T |
43211208 |
ttgagcaggtctgttacaaagaagaccaaattcacaat |
43211171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 6 - 223
Target Start/End: Complemental strand, 43226047 - 43225826
Alignment:
| Q |
6 |
cacattgtttatttacaacgatttttgaatatgacgaaaacctgaggtctgaatgccttcccaacataa----tatcctcacaggttgtgactgtaggaa |
101 |
Q |
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| T |
43226047 |
cacattatttgtttacaatgatttttgaatatgatgaaaacctgaggtctaaatgcctttctaacataaataatatactcataggttgtgactgtaggaa |
43225948 |
T |
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| Q |
102 |
atattcaaggaggtggtgcattcaatgttattccaaacttcgtcacaattggtggcaccttccgagcatttttgagagaaagcttcacgcaactaagaca |
201 |
Q |
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| T |
43225947 |
agtttcaaggaggtggtgcattcaatgttattccagactccgtcacaattggtggcaccttccgagctttttcgagagaaagcttcacgcatctgagaca |
43225848 |
T |
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| Q |
202 |
acgtattgagcaggtctgttac |
223 |
Q |
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| T |
43225847 |
ccgtattgagcaggtctgttac |
43225826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 6 - 225
Target Start/End: Original strand, 41652008 - 41652229
Alignment:
| Q |
6 |
cacattgtttatttacaacgatttttgaatatgacgaaaacctgaggtctgaatgccttcccaaca--taatatcctcacaggttgtgactgtaggaaat |
103 |
Q |
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| T |
41652008 |
cacattatttgtttacaatgattttttaatatgacgaaaacctgaggcctaaatgccttcctaacaaataatatcctcgcaggttgtgacagtaggaaag |
41652107 |
T |
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| Q |
104 |
attcaaggaggtggtgcattcaatgttattccaaacttcgtcacaattggtggcaccttccgagcatttttgagagaaagcttcacgcaactaagacaac |
203 |
Q |
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| T |
41652108 |
tttcaaggaggtggtgcattcaatgttattccagactctgtcacaattggtggcaccttccgagcttttccaagagaaagcttcacgcatctgagacacc |
41652207 |
T |
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| Q |
204 |
gtattgagcaggtctgttacaa |
225 |
Q |
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| T |
41652208 |
gtattgagcaggtctgtcacaa |
41652229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 71 - 232
Target Start/End: Complemental strand, 43204049 - 43203888
Alignment:
| Q |
71 |
ataatatcctcacaggttgtgactgtaggaaatattcaaggaggtggtgcattcaatgttattccaaacttcgtcacaattggtggcaccttccgagcat |
170 |
Q |
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| T |
43204049 |
ataatatcctcataggttttgactgtagcaatgattcaaggaggtggtgcattcaatgttattccagactctgtcacaattggtggcactttccgagctt |
43203950 |
T |
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| Q |
171 |
ttttgagagaaagcttcacgcaactaagacaacgtattgagcaggtctgttacaaagaagaa |
232 |
Q |
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| T |
43203949 |
tttcaaacgaaagcttcacacaactgagacaccgcattgagcaggtctgttatgaagaagaa |
43203888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 5070594 - 5070461
Alignment:
| Q |
83 |
caggttgtgactgtaggaaatattcaaggaggtggtgcattcaatgttattccaaacttcgtcacaattggtggcaccttccgagcatttttgagagaaa |
182 |
Q |
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| T |
5070594 |
caggttgtgacgattgcaaagatccaaggaggtagtgcattcaatgttattccagatcatgtcacaattggtggtaccttccgagccttttctaaagaaa |
5070495 |
T |
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| Q |
183 |
gcttcacgcaactaagacaacgtattgagcaggt |
216 |
Q |
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| T |
5070494 |
gcttcaaccaactgagacagcggattgaggaggt |
5070461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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