View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4521_high_2 (Length: 336)
Name: NF4521_high_2
Description: NF4521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4521_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 294
Target Start/End: Complemental strand, 44007560 - 44007284
Alignment:
| Q |
18 |
accttgtgcaaacccaaacgttttgcatcaacagcacaagaagagtcgacgttggaaattaaggatagtcgacggttcaactctttggcggaaatatcaa |
117 |
Q |
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| T |
44007560 |
accttgtgcaaacccaaacgttttgcatcaacagcacaagaagagtcgacgttggagattaaggatagtcgacggttcaactctttagcggaaatatcaa |
44007461 |
T |
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| Q |
118 |
cttctttcgaaagcaaattgaaagaaacagatgtttcaatgattgtagcacccaaaatgctgaaagctttgttgttttcttcagagaaagaagcgtgagt |
217 |
Q |
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| T |
44007460 |
cgtctttcgaaagcaaattgaaagaaacagatgtttcaatgcttgtagcacccaaaatgctgaaagctttgttgttttcttcagagaaagaagcgtgagt |
44007361 |
T |
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| Q |
218 |
cattgcacgacgaagaagacttatgctcttgaaagtgtacctgatcagtatgtaataacacgttaaaatgaacaaat |
294 |
Q |
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| T |
44007360 |
cattgcacgacgaagaagacttatgctcttgaaagtgtacctgatcagtatgtaacaacacgttaaaatgaacaaat |
44007284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 99 - 294
Target Start/End: Original strand, 30586040 - 30586235
Alignment:
| Q |
99 |
tctttggcggaaatatcaacttctttcgaaagcaaattgaaagaaacagatgtttcaatgattgtagcacccaaaatgctgaaagctttgttgttttctt |
198 |
Q |
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||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30586040 |
tctttagcggaaatatcaacgtctttcgaaagcaaattgaaagaaacagatgtttcaatgattgtagcacccaaaatgctgaaagctttgttgttttctt |
30586139 |
T |
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| Q |
199 |
cagagaaagaagcgtgagtcattgcacgacgaagaagacttatgctcttgaaagtgtacctgatcagtatgtaataacacgttaaaatgaacaaat |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30586140 |
cagagaaagaagcgtgagtcattgcacgacgaagaagacttatgctcttgaaagtgtacctgatcagtatgtaataacacgttaaaatgaacaaat |
30586235 |
T |
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