View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4521_low_1 (Length: 553)

Name: NF4521_low_1
Description: NF4521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4521_low_1
NF4521_low_1
[»] chr2 (13 HSPs)
chr2 (27-267)||(1403161-1403402)
chr2 (328-536)||(1402891-1403099)
chr2 (328-536)||(1399196-1399403)
chr2 (110-259)||(1399464-1399613)
chr2 (79-240)||(410180-410341)
chr2 (79-236)||(821078-821235)
chr2 (103-213)||(982083-982193)
chr2 (109-235)||(974020-974146)
chr2 (109-200)||(965474-965565)
chr2 (372-426)||(974971-975025)
chr2 (372-426)||(965702-965756)
chr2 (372-413)||(409824-409865)
chr2 (137-174)||(989792-989829)
[»] chr3 (1 HSPs)
chr3 (73-236)||(45810459-45810622)
[»] chr6 (2 HSPs)
chr6 (109-223)||(10116756-10116870)
chr6 (362-413)||(10117267-10117318)
[»] chr7 (4 HSPs)
chr7 (89-229)||(1445999-1446139)
chr7 (88-230)||(12105209-12105351)
chr7 (367-413)||(1446151-1446197)
chr7 (365-413)||(1459552-1459600)


Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 27 - 267
Target Start/End: Complemental strand, 1403402 - 1403161
Alignment:
Q  27 ccttaaatgtcaat-attttaaattggagtacataaaaaatgcacgataagaaaagaaaagataaatcaaataagtttcttatatttaagacacatacct 125  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1403402 ccttaaatgtcaatcattttaaattggagtacataaaaaatgcacgataagaaaagaaaagataaatcaaataagtttcttatatttaagacacatacct 1403303  T
Q  126 cataaaagtcaagattttgaagcttagggcaatggtagagcacttgtacaattatatcacagttatagttgagcaccagatgagtcaaattatggaatgt 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1403302 cataaaagtcaagattttgaagcttagggcaatggtagagcacttgtacaattatatcacagttatagttgagcaccagatgagtcaaattatggaatgt 1403203  T
Q  226 aggaaagtcattaggtggacaataaccctacatttgaaagaa 267  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  1403202 aggaaagtcattaggtggacaataaccctacatttgaaagaa 1403161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 328 - 536
Target Start/End: Complemental strand, 1403099 - 1402891
Alignment:
Q  328 tatcacattattctttttcattggcatgcatcatcaaaccttgcatagttgtatgcgtagaaactccacatttgaaagtgatttcaccataaaatagcaa 427  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1403099 tatcacattattctttttcattggcatgcatcatcaaaccttgcatagttgtatgcgtagaaactccacatttgaaagtgatttcaccataaaatagcaa 1403000  T
Q  428 ccatgataggttatatctgctttgttcaacctttttaagcttgagcatcttaattgttgtttacgatataaagaagagaaacgagcggaagggtcaaagt 527  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1402999 ccatgatcggttatatctgctttgttcaacctttttaagcttgagcatcttaattgttgtttacgatataaagaagagaaacgagcggaagggtcaaagt 1402900  T
Q  528 gtatattag 536  Q
    |||||||||    
T  1402899 gtatattag 1402891  T

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Target: chr2; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 328 - 536
Target Start/End: Complemental strand, 1399403 - 1399196
Alignment:
Q  328 tatcacattattctttttcattggcatgcatcatcaaaccttgcatagttgtatgcgtagaaactccacatttgaaagtgatttcaccataaaatagcaa 427  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1399403 tatcacattatt-tttttcattggcatgcatcatcaaaccttgcatagttgtatgcgtagaaactccacatttgaaagtgatttcaccataaaatagcaa 1399305  T
Q  428 ccatgataggttatatctgctttgttcaacctttttaagcttgagcatcttaattgttgtttacgatataaagaagagaaacgagcggaagggtcaaagt 527  Q
     |||| | ||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||| |||||||||||||||||||||| ||||||    
T  1399304 tcatggtcggttatatctgctttgttcaacctttttaagcttgagccgcttaattgttggttacgatatagagaagagaaacgagcggaagggccaaagt 1399205  T
Q  528 gtatattag 536  Q
    |||||||||    
T  1399204 gtatattag 1399196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 110 - 259
Target Start/End: Complemental strand, 1399613 - 1399464
Alignment:
Q  110 tttaagacacatacctcataaaagtcaagattttgaagcttagggcaatggtagagcacttgtacaattatatcacagttatagttgagcaccagatgag 209  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  1399613 tttaagacacatacctcgtaaaattcaagattttgaagcttagggcaatggtggagcacttgtacaattatatcacagctatagttgagcaccagatgag 1399514  T
Q  210 tcaaattatggaatgtaggaaagtcattaggtggacaataaccctacatt 259  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1399513 tcaaattatggaatgtagaaaagtcattaggtggacaataaccctacatt 1399464  T

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Target: chr2; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 79 - 240
Target Start/End: Complemental strand, 410341 - 410180
Alignment:
Q  79 aagaaaagataaatcaaataagtttcttatatttaagacacatacctcataaaagtcaagattttgaagcttagggcaatggtagagcacttgtacaatt 178  Q
    |||||||||||||||||||| | |||||| |||||| | ||| |||  |||||  |||||||||||||||||||||||||||| |||||||||||||| |    
T  410341 aagaaaagataaatcaaatatgattcttaaatttaacaaacaaacccgataaagttcaagattttgaagcttagggcaatggtggagcacttgtacaact 410242  T
Q  179 atatcacagttatagttgagcaccagatgagtcaaattatggaatgtaggaaagtcattagg 240  Q
    ||||| | ||  ||||||| ||||| |||  ||||||||||||||||||| |||||||||||    
T  410241 atatccccgtcgtagttgatcaccaaatggatcaaattatggaatgtagggaagtcattagg 410180  T

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Target: chr2; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 79 - 236
Target Start/End: Complemental strand, 821235 - 821078
Alignment:
Q  79 aagaaaagataaatcaaataagtttcttatatttaagacacatacctcataaaagtcaagattttgaagcttagggcaatggtagagcacttgtacaatt 178  Q
    |||||||||||||||||||| | |||||| | |||| |  || |||| |||||  |||||||||||||||||||||||||||| ||||||   ||||| |    
T  821235 aagaaaagataaatcaaataggattcttaaacttaacaagcaaacctgataaagttcaagattttgaagcttagggcaatggtggagcacccatacaact 821136  T
Q  179 atatcacagttatagttgagcaccagatgagtcaaattatggaatgtaggaaagtcat 236  Q
    ||||  || | ||||||| |||||| ||| ||||||||||| ||||||||||||||||    
T  821135 atattccaatcatagttgtgcaccaaatgggtcaaattatgaaatgtaggaaagtcat 821078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 103 - 213
Target Start/End: Original strand, 982083 - 982193
Alignment:
Q  103 tcttatatttaagacacatacctcataaaagtcaagattttgaagcttagggcaatggtagagcacttgtacaattatatcacagttatagttgagcacc 202  Q
    |||||||||||| | ||| |||| ||||| |||||||||||||||||||  |||||||| ||||||| |||||| |||||  || | |||||||||||||    
T  982083 tcttatatttaacaaacaaacctgataaaggtcaagattttgaagcttaaagcaatggtggagcactcgtacaactatattccaatcatagttgagcacc 982182  T
Q  203 agatgagtcaa 213  Q
    | |||||||||    
T  982183 aaatgagtcaa 982193  T

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Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 109 - 235
Target Start/End: Original strand, 974020 - 974146
Alignment:
Q  109 atttaagacacatacctcataaaagtcaagattttgaagcttagggcaatggtagagcacttgtacaattatatcacagttatagttgagcaccagatga 208  Q
    |||||| | ||| |||| ||||| ||||||||||||||||||||||||||| | ||||||||| |||| |||||| || | |||||||||||| |    |    
T  974020 atttaacaaacaaacctgataaaggtcaagattttgaagcttagggcaatgatggagcacttgaacaactatatcccaatcatagttgagcactaaccaa 974119  T
Q  209 gtcaaattatggaatgtaggaaagtca 235  Q
    |||||||| | ||| ||||||||||||    
T  974120 gtcaaattgttgaacgtaggaaagtca 974146  T

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Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 200
Target Start/End: Original strand, 965474 - 965565
Alignment:
Q  109 atttaagacacatacctcataaaagtcaagattttgaagcttagggcaatggtagagcacttgtacaattatatcacagttatagttgagca 200  Q
    |||||| | ||| |||| |||||  |||||||||||||||||||||||||| | ||||||||| |||| |||||| || | |||||||||||    
T  965474 atttaacaaacaaacctgataaagttcaagattttgaagcttagggcaatgatggagcacttgaacaactatatcccaatcatagttgagca 965565  T

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Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 372 - 426
Target Start/End: Original strand, 974971 - 975025
Alignment:
Q  372 atagttgtatgcgtagaaactccacatttgaaagtgatttcaccataaaatagca 426  Q
    |||||| ||||||||||||||||| |||||||||||||||||||  |||||||||    
T  974971 atagttttatgcgtagaaactccaaatttgaaagtgatttcaccggaaaatagca 975025  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 426
Target Start/End: Original strand, 965702 - 965756
Alignment:
Q  372 atagttgtatgcgtagaaactccacatttgaaagtgatttcaccataaaatagca 426  Q
    ||||||||||| ||| ||| |||| |||||||||||||||||||  |||||||||    
T  965702 atagttgtatgtgtaaaaattccaaatttgaaagtgatttcaccggaaaatagca 965756  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 413
Target Start/End: Complemental strand, 409865 - 409824
Alignment:
Q  372 atagttgtatgcgtagaaactccacatttgaaagtgatttca 413  Q
    |||||||||| ||||||||||||| ||||||||| |||||||    
T  409865 atagttgtatacgtagaaactccaaatttgaaagcgatttca 409824  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 174
Target Start/End: Original strand, 989792 - 989829
Alignment:
Q  137 agattttgaagcttagggcaatggtagagcacttgtac 174  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  989792 agattttgaagcttagggcagtggtggagcacttgtac 989829  T

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Target: chr3 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 73 - 236
Target Start/End: Original strand, 45810459 - 45810622
Alignment:
Q  73 taagaaaagaaaagataaatcaaataagtttcttatatttaagacacatacctcataaaagtcaagattttgaagcttagggcaatggtagagcacttgt 172  Q
    |||||||  |||| |||||||||||| | |  ||| |||||| |  || |||| ||||| ||| ||| ||||||||||||| ||||| |  |||||||||    
T  45810459 taagaaagaaaaaaataaatcaaatatgatcgttaaatttaacaagcaaacctgataaaggtcgagactttgaagcttaggacaatgctgaagcacttgt 45810558  T
Q  173 acaattatatcacagttatagttgagcaccagatgagtcaaattatggaatgtaggaaagtcat 236  Q
    |||| |||||| || | |||||||| ||||| |||||||||||||| |||||||||||||||||    
T  45810559 acaactatatcccaatcatagttgaccaccaaatgagtcaaattattgaatgtaggaaagtcat 45810622  T

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Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 109 - 223
Target Start/End: Original strand, 10116756 - 10116870
Alignment:
Q  109 atttaagacacatacctcataaaagtcaagattttgaagcttagggcaatggtagagcacttgtacaattatatcacagttatagttgagcaccagatga 208  Q
    |||||| | ||| |||| |||||  |||||||||||||| ||||||||||||| |||||||||||||| |||||| || | ||||  |||||||| ||||    
T  10116756 atttaacaaacaaacctgataaagttcaagattttgaaggttagggcaatggtggagcacttgtacaactatatcccaatcatagaggagcaccaaatga 10116855  T
Q  209 gtcaaattatggaat 223  Q
    |||||||||||||||    
T  10116856 gtcaaattatggaat 10116870  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 362 - 413
Target Start/End: Original strand, 10117267 - 10117318
Alignment:
Q  362 caaaccttgcatagttgtatgcgtagaaactccacatttgaaagtgatttca 413  Q
    ||||||||| |||||||||||| ||||||||||| ||||||||||| |||||    
T  10117267 caaaccttgaatagttgtatgcctagaaactccaaatttgaaagtgctttca 10117318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 9e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 89 - 229
Target Start/End: Original strand, 1445999 - 1446139
Alignment:
Q  89 aaatcaaataagtttcttatatttaagacacatacctcataaaagtcaagattttgaagcttagggcaatggtagagcacttgtacaattatatcacagt 188  Q
    |||||||||| | || ||| | |||||| ||| |||| |||||| |||| ||||||||||||||||||| ||||||||||  ||  || |||| | ||      
T  1445999 aaatcaaatacgattgttaaaattaagaaacaaacctgataaaattcaatattttgaagcttagggcaaaggtagagcacacgttgaactataccccaac 1446098  T
Q  189 tatagttgagcaccagatgagtcaaattatggaatgtagga 229  Q
    | ||| ||||||||| |||||||||||||||||||||||||    
T  1446099 tgtagctgagcaccaaatgagtcaaattatggaatgtagga 1446139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 88 - 230
Target Start/End: Complemental strand, 12105351 - 12105209
Alignment:
Q  88 taaatcaaataagtttcttatatttaagacacatacctcataaaagtcaagattttgaagcttagggcaatggtagagcacttgtacaattatatcacag 187  Q
    ||||||||||| | || ||| |||||||| ||| |||| | ||| ||||||||||||||||||||| ||| |||  |||| |  |  || |||||| ||     
T  12105351 taaatcaaatatgattgttaaatttaagaaacaaacctgaaaaaggtcaagattttgaagcttaggacaaaggtgcagcattcttggaactatatcccaa 12105252  T
Q  188 ttatagttgagcaccagatgagtcaaattatggaatgtaggaa 230  Q
    ||||||  |||||||| ||||||||||||||||||||||||||    
T  12105251 ttatagcagagcaccaaatgagtcaaattatggaatgtaggaa 12105209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 413
Target Start/End: Original strand, 1446151 - 1446197
Alignment:
Q  367 cttgcatagttgtatgcgtagaaactccacatttgaaagtgatttca 413  Q
    |||| |||||| ||||||||||||||||||||||||||||| |||||    
T  1446151 cttgtatagttttatgcgtagaaactccacatttgaaagtgctttca 1446197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 413
Target Start/End: Original strand, 1459552 - 1459600
Alignment:
Q  365 accttgcatagttgtatgcgtagaaactccacatttgaaagtgatttca 413  Q
    |||||| |||||| |||| |||||||||||||||||||||||| |||||    
T  1459552 accttggatagttttatgtgtagaaactccacatttgaaagtgctttca 1459600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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