View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4521_low_4 (Length: 281)
Name: NF4521_low_4
Description: NF4521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4521_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 7332898 - 7333123
Alignment:
| Q |
18 |
cacaattggtcaatgattctcatatctcagataaactaattagggtaacgctaacctttggcctcatgataagaaatctaacgactttatcttgaaaatt |
117 |
Q |
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| T |
7332898 |
cacaattggtcaatgattctcatatctcagataaactaattagggtaacgctaacctttggccgcatgataagaaatctaacgactttatcttgaaaatt |
7332997 |
T |
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| Q |
118 |
gtgcatattacattgaaactttaaaaaattagtttgggttcattaaactcatcaagaacactcattagcacaacccaactaactttatgccaaactaatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7332998 |
gtgcatattacattgaaactttaaaaaattagtttgggttcattaaactcatcaagaacactcattagcacaacccaactaactttatgccaaactaatt |
7333097 |
T |
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| Q |
218 |
tcaactattagctacattgcttgttc |
243 |
Q |
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| T |
7333098 |
tcaactattagctacattgcttgttc |
7333123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 7300579 - 7300538
Alignment:
| Q |
194 |
aactaactttatgccaaactaatttcaactattagctacatt |
235 |
Q |
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| T |
7300579 |
aactaattttatgccaaactaatttcaactaacagctacatt |
7300538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 7300612 - 7300572
Alignment:
| Q |
18 |
cacaattggtcaatgattctcatatctcagataaactaatt |
58 |
Q |
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| T |
7300612 |
cacaaatggtcaatgattctcataactcaaataaactaatt |
7300572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 13645926 - 13645853
Alignment:
| Q |
101 |
actttatcttgaaaattgtgcat--attacattgaaactttaaaaaattagtttgggttcattaaactcatcaa |
172 |
Q |
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| T |
13645926 |
actttatcttaagaattgtgcattcattacattgaaactttaaaaattgactttgacttcattaaactcatcaa |
13645853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 38139686 - 38139759
Alignment:
| Q |
101 |
actttatcttgaaaattgtgcat--attacattgaaactttaaaaaattagtttgggttcattaaactcatcaa |
172 |
Q |
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| T |
38139686 |
actttattttgaaaattgtgcatttattacattgaaactttgaaaattgacttttgtttcattaaattcatcaa |
38139759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 37228353 - 37228402
Alignment:
| Q |
123 |
tattacattgaaactttaaaaaattagtttgggttcattaaactcatcaa |
172 |
Q |
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| T |
37228353 |
tattacattgaaactttaaaaattgacttttgcttcattaaactcatcaa |
37228402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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