View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4521_low_6 (Length: 235)

Name: NF4521_low_6
Description: NF4521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4521_low_6
NF4521_low_6
[»] chr4 (39 HSPs)
chr4 (5-192)||(4719998-4720176)
chr4 (5-179)||(51683480-51683655)
chr4 (5-179)||(11083626-11083811)
chr4 (5-179)||(21538072-21538257)
chr4 (5-179)||(50275012-50275187)
chr4 (8-179)||(55407410-55407582)
chr4 (5-179)||(1308734-1308909)
chr4 (5-179)||(21022508-21022683)
chr4 (5-179)||(48256191-48256366)
chr4 (5-179)||(50901758-50901933)
chr4 (5-179)||(1089204-1089379)
chr4 (96-179)||(10753149-10753232)
chr4 (96-179)||(10966918-10967001)
chr4 (5-179)||(37021703-37021878)
chr4 (5-179)||(67869-68044)
chr4 (5-179)||(14297403-14297588)
chr4 (5-179)||(14315652-14315837)
chr4 (5-179)||(30726361-30726536)
chr4 (5-179)||(41933243-41933418)
chr4 (6-84)||(11050144-11050222)
chr4 (5-148)||(46436553-46436697)
chr4 (5-179)||(40357900-40358075)
chr4 (129-183)||(55279988-55280042)
chr4 (5-84)||(44679695-44679774)
chr4 (5-84)||(50023163-50023242)
chr4 (5-84)||(50030281-50030360)
chr4 (5-70)||(6181410-6181475)
chr4 (5-70)||(9892888-9892953)
chr4 (5-70)||(31422085-31422150)
chr4 (5-62)||(41798615-41798672)
chr4 (5-70)||(49090808-49090873)
chr4 (5-70)||(49165421-49165486)
chr4 (143-182)||(49165308-49165347)
chr4 (143-181)||(6181549-6181587)
chr4 (143-181)||(49090696-49090734)
chr4 (128-181)||(3184232-3184285)
chr4 (132-181)||(31421973-31422022)
chr4 (128-181)||(50023287-50023340)
chr4 (128-181)||(50193754-50193807)
[»] chr3 (45 HSPs)
chr3 (5-192)||(31045214-31045401)
chr3 (5-179)||(42756431-42756606)
chr3 (5-179)||(48889021-48889196)
chr3 (5-179)||(20917637-20917812)
chr3 (5-179)||(20926599-20926774)
chr3 (5-179)||(49196067-49196242)
chr3 (5-179)||(597036-597211)
chr3 (5-179)||(4007943-4008118)
chr3 (5-179)||(30255622-30255797)
chr3 (5-179)||(42165440-42165615)
chr3 (5-179)||(50216498-50216673)
chr3 (5-179)||(50963232-50963407)
chr3 (5-179)||(3975984-3976159)
chr3 (9-179)||(44229991-44230162)
chr3 (5-179)||(3501512-3501687)
chr3 (5-179)||(47073827-47074002)
chr3 (14-179)||(51807247-51807413)
chr3 (5-70)||(52391016-52391081)
chr3 (8-138)||(42805885-42806016)
chr3 (5-70)||(29009247-29009312)
chr3 (128-188)||(4172076-4172135)
chr3 (5-84)||(36127810-36127889)
chr3 (5-84)||(41612741-41612820)
chr3 (8-62)||(48563323-48563377)
chr3 (5-70)||(16611465-16611530)
chr3 (128-181)||(17567808-17567861)
chr3 (5-70)||(22047723-22047788)
chr3 (132-181)||(34045652-34045701)
chr3 (5-70)||(42903810-42903875)
chr3 (5-70)||(46389349-46389414)
chr3 (132-181)||(49144210-49144259)
chr3 (5-70)||(50480404-50480469)
chr3 (5-70)||(54386511-54386576)
chr3 (111-179)||(48563221-48563289)
chr3 (128-179)||(4178082-4178133)
chr3 (5-84)||(17567684-17567763)
chr3 (5-63)||(4178198-4178256)
chr3 (143-181)||(46389237-46389275)
chr3 (143-181)||(46701784-46701822)
chr3 (143-181)||(54386399-54386437)
chr3 (5-70)||(2274534-2274599)
chr3 (128-181)||(20350920-20350973)
chr3 (128-181)||(41612643-41612696)
chr3 (5-70)||(49144083-49144147)
chr3 (132-181)||(50480532-50480581)
[»] scaffold0007 (1 HSPs)
scaffold0007 (3-191)||(251094-251282)
[»] chr8 (34 HSPs)
chr8 (6-179)||(24249761-24249934)
chr8 (12-192)||(22495173-22495363)
chr8 (5-173)||(5303841-5304010)
chr8 (5-179)||(39601993-39602168)
chr8 (5-179)||(39846606-39846781)
chr8 (5-179)||(42485158-42485333)
chr8 (5-176)||(15036348-15036520)
chr8 (5-179)||(40076870-40077045)
chr8 (5-179)||(43188327-43188502)
chr8 (5-148)||(39252320-39252464)
chr8 (12-179)||(41249700-41249868)
chr8 (96-179)||(34822729-34822812)
chr8 (5-179)||(43211783-43211958)
chr8 (5-179)||(2984400-2984575)
chr8 (5-70)||(37327171-37327236)
chr8 (5-179)||(489249-489424)
chr8 (95-179)||(37327082-37327165)
chr8 (96-179)||(25864652-25864734)
chr8 (128-182)||(5677345-5677399)
chr8 (6-179)||(39938837-39939011)
chr8 (5-84)||(35552039-35552118)
chr8 (128-179)||(45128027-45128078)
chr8 (5-70)||(25147-25212)
chr8 (5-70)||(1052912-1052977)
chr8 (5-70)||(23021941-23022006)
chr8 (5-70)||(26659834-26659899)
chr8 (116-179)||(45064519-45064582)
chr8 (5-84)||(45128123-45128202)
chr8 (143-181)||(25286-25324)
chr8 (143-181)||(22510816-22510854)
chr8 (143-181)||(26659722-26659760)
chr8 (128-181)||(20857561-20857614)
chr8 (132-181)||(23022069-23022118)
chr8 (8-84)||(20857659-20857735)
[»] chr7 (27 HSPs)
chr7 (5-179)||(17741068-17741253)
chr7 (5-179)||(36977876-36978051)
chr7 (5-179)||(39460806-39460981)
chr7 (5-179)||(47776612-47776787)
chr7 (5-179)||(10517258-10517433)
chr7 (5-179)||(15073848-15074023)
chr7 (5-179)||(17835354-17835529)
chr7 (5-179)||(27453239-27453414)
chr7 (5-179)||(47672705-47672880)
chr7 (5-178)||(42507647-42507821)
chr7 (5-179)||(9494415-9494590)
chr7 (5-179)||(34738644-34738819)
chr7 (5-179)||(37340582-37340757)
chr7 (3-84)||(46740165-46740246)
chr7 (5-70)||(17465341-17465406)
chr7 (5-70)||(17587808-17587873)
chr7 (5-70)||(41880878-41880943)
chr7 (5-70)||(48403745-48403810)
chr7 (5-70)||(35610036-35610101)
chr7 (5-84)||(556266-556345)
chr7 (128-179)||(556390-556441)
chr7 (130-181)||(5541286-5541336)
chr7 (143-181)||(9371145-9371183)
chr7 (143-181)||(35610175-35610213)
chr7 (128-181)||(16675049-16675102)
chr7 (128-181)||(17649417-17649470)
chr7 (128-181)||(41734439-41734492)
[»] chr1 (33 HSPs)
chr1 (5-175)||(17514316-17514497)
chr1 (5-179)||(52802409-52802584)
chr1 (5-179)||(23275723-23275899)
chr1 (5-179)||(35258493-35258668)
chr1 (5-179)||(49857563-49857738)
chr1 (5-179)||(51320992-51321167)
chr1 (5-179)||(45825154-45825330)
chr1 (5-179)||(19925020-19925195)
chr1 (5-191)||(25147559-25147755)
chr1 (5-179)||(30890339-30890514)
chr1 (5-179)||(47502593-47502768)
chr1 (96-179)||(11196158-11196241)
chr1 (5-179)||(19527163-19527338)
chr1 (5-84)||(23935585-23935664)
chr1 (5-179)||(31783348-31783523)
chr1 (5-84)||(47656244-47656323)
chr1 (96-179)||(11183459-11183542)
chr1 (5-70)||(2365624-2365689)
chr1 (5-70)||(3732001-3732066)
chr1 (5-70)||(8474173-8474238)
chr1 (5-70)||(13639643-13639708)
chr1 (5-70)||(19156403-19156468)
chr1 (128-181)||(21141303-21141356)
chr1 (5-70)||(26876045-26876110)
chr1 (128-181)||(50343713-50343766)
chr1 (5-84)||(21141401-21141480)
chr1 (5-84)||(50343589-50343668)
chr1 (143-181)||(3732140-3732178)
chr1 (143-181)||(8474061-8474099)
chr1 (128-181)||(97692-97745)
chr1 (132-181)||(26875933-26875982)
chr1 (128-181)||(38127227-38127280)
chr1 (5-84)||(2424988-2425065)
[»] chr5 (18 HSPs)
chr5 (5-179)||(8701844-8702019)
chr5 (5-179)||(512392-512567)
chr5 (5-179)||(38968375-38968551)
chr5 (5-179)||(19228292-19228467)
chr5 (5-179)||(7757602-7757777)
chr5 (5-179)||(20422217-20422402)
chr5 (5-179)||(28241419-28241594)
chr5 (5-179)||(42537427-42537602)
chr5 (5-179)||(40624534-40624718)
chr5 (5-179)||(42942106-42942281)
chr5 (5-179)||(14309-14484)
chr5 (5-179)||(8580125-8580300)
chr5 (5-179)||(17658600-17658775)
chr5 (5-62)||(19040737-19040794)
chr5 (5-84)||(5197347-5197426)
chr5 (128-181)||(5197249-5197302)
chr5 (5-62)||(28877039-28877096)
chr5 (5-70)||(27673273-27673338)
[»] chr2 (30 HSPs)
chr2 (5-191)||(31367295-31367492)
chr2 (96-191)||(35464316-35464411)
chr2 (5-179)||(25965098-25965273)
chr2 (5-179)||(28468919-28469094)
chr2 (6-179)||(7185307-7185481)
chr2 (5-179)||(21998468-21998643)
chr2 (5-179)||(32955974-32956149)
chr2 (5-179)||(39947878-39948053)
chr2 (5-179)||(45428869-45429044)
chr2 (12-179)||(17420845-17421013)
chr2 (128-179)||(25515553-25515604)
chr2 (96-179)||(45137144-45137227)
chr2 (6-70)||(15831516-15831580)
chr2 (5-84)||(20938270-20938349)
chr2 (5-84)||(29401224-29401303)
chr2 (5-70)||(3940349-3940414)
chr2 (132-181)||(3940477-3940526)
chr2 (5-70)||(5352353-5352418)
chr2 (5-70)||(30496567-30496632)
chr2 (132-181)||(43978796-43978845)
chr2 (5-70)||(43978908-43978973)
chr2 (128-181)||(45284448-45284501)
chr2 (128-181)||(45291811-45291864)
chr2 (5-84)||(36655970-36656049)
chr2 (5-84)||(45284546-45284625)
chr2 (5-84)||(45291909-45291988)
chr2 (143-181)||(5352241-5352279)
chr2 (143-181)||(30496706-30496744)
chr2 (143-181)||(43539497-43539535)
chr2 (128-180)||(36656094-36656146)
[»] chr6 (20 HSPs)
chr6 (35-177)||(29821674-29821821)
chr6 (77-191)||(30424127-30424241)
chr6 (7-179)||(6320185-6320358)
chr6 (5-179)||(24088402-24088577)
chr6 (5-79)||(21600983-21601057)
chr6 (5-84)||(24722302-24722381)
chr6 (5-179)||(31768979-31769158)
chr6 (35-88)||(14216597-14216650)
chr6 (113-192)||(14216481-14216561)
chr6 (5-70)||(6201536-6201601)
chr6 (5-70)||(11688503-11688568)
chr6 (5-70)||(22301568-22301633)
chr6 (5-70)||(30829272-30829337)
chr6 (5-60)||(3381182-3381237)
chr6 (5-84)||(3501543-3501622)
chr6 (143-181)||(6201424-6201462)
chr6 (143-181)||(11688391-11688429)
chr6 (143-181)||(30829411-30829449)
chr6 (114-175)||(3381055-3381116)
chr6 (128-181)||(3501445-3501498)
[»] scaffold0634 (1 HSPs)
scaffold0634 (6-179)||(7696-7870)
[»] scaffold0180 (1 HSPs)
scaffold0180 (5-179)||(15243-15418)
[»] scaffold0293 (1 HSPs)
scaffold0293 (9-179)||(352-523)
[»] scaffold0155 (1 HSPs)
scaffold0155 (96-179)||(8481-8564)
[»] scaffold0101 (1 HSPs)
scaffold0101 (96-179)||(40747-40830)
[»] scaffold0877 (1 HSPs)
scaffold0877 (128-182)||(4398-4452)
[»] scaffold0238 (2 HSPs)
scaffold0238 (128-179)||(18677-18728)
scaffold0238 (5-70)||(18553-18618)


Alignment Details
Target: chr4 (Bit Score: 144; Significance: 7e-76; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 5 - 192
Target Start/End: Original strand, 4719998 - 4720176
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctacttaaacatcaattacagcaattacattcat 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||    
T  4719998 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctacttaaacatcaat---------tacattcat 4720088  T
Q  105 ttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactaccaaaatttacaac 192  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  4720089 ttaccaattcataaactacacacgcaatcatcaaaatgtcaattcttacgtaaaccctaaccacatgcaaactaccaaaatttacaac 4720176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 51683655 - 51683480
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | ||||||| ||   ||| ||| ||||||||    
T  51683655 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaacaacatagacaacaactacattca 51683556  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | ||||||||| |||||| |||||||||||| ||||||||   | || |||||||||||||||||||||||    
T  51683555 tttatcaattcataaaatacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 51683480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 11083626 - 11083811
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctacttaaacatcaatta-----------cagca 93  Q
    |||||||||||||||| |||||||||| ||  | |||||| |||||||||||||||||| |||||| |  ||| |||||| |||           || ||    
T  11083626 cactttgtgtgcaaagcatcaaacatactcaaaatgtgttcatttgacaccattcaaaaccacatttttattatacatcatttaaacagcataggcaaca 11083725  T
Q  94 attacattcatttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    | |||||||||||| | || ||||||||||||| ||||| |||||| ||||||||||| |||||||||||||||||||||||||||    
T  11083726 actacattcatttatcaatacataaactacacatgcaatgatcaaattgtcaattcattcataaaccctaaccacatgcaaactac 11083811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 21538072 - 21538257
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctacttaaacatcaatta-----------cagca 93  Q
    ||||||||||||||||||||||||| ||||  |||||||| ||||| || ||||||||| |||||| |  |||||||||| |||           || ||    
T  21538072 cactttgtgtgcaaagtatcaaacagattcaaattgtgttcatttggcatcattcaaaaccacattatcattaaacatcatttaaacaacataggcaaca 21538171  T
Q  94 attacattcatttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    | |||||||||||| | ||||||||||||| || |||||  ||||| ||||||||||| |||||||||||||||||||||||||||    
T  21538172 actacattcatttatcaattcataaactacccatgcaatgttcaaattgtcaattcattcataaaccctaaccacatgcaaactac 21538257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 50275187 - 50275012
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    |||||||||||||||| || ||||||||||  |||||||| ||||| |||||||||||  |||||||| | ||||||| ||    || ||| ||||||||    
T  50275187 cactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccattcaaagccacattctgatttaaacaacataggcaacaactacattca 50275088  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||| ||||||||||| |||||||||||| ||||||||   | || |||||||||||||||||||||||    
T  50275087 tttatcaattcctaaactacacatgcaatcatcaaattgtcaattttaaaattaaccctaaccacatgcaaactac 50275012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 55407410 - 55407582
Alignment:
Q  8 tttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattcattt 106  Q
    |||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | || |||| ||    || ||| |||||||||||    
T  55407410 tttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgattttaacaacataggcaacaactacattcattt 55407509  T
Q  107 accgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    | | |||||||||||||||| |||||||||||| ||||||||   | || |||||||||||||||||||||||    
T  55407510 atcaattcataaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 55407582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 1308734 - 1308909
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctactt-aaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| || || ||||  ||  | || ||  ||||||||    
T  1308734 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattataatttaaactacatatgcaacatctacattca 1308833  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | || ||||||||||||| ||||| || ||| |||||||||||  ||||| ||||||||||||||||||||    
T  1308834 tttatcaatacataaactacacatgcaatgatgaaattgtcaattcatttataaaacctaaccacatgcaaactac 1308909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 21022508 - 21022683
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | ||||||| ||    || ||| ||||||||    
T  21022508 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaacaacataggcaacaactacattca 21022607  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||| ||||||||||| |||||||||||| ||||||||   | || |||||||||||||| ||||||||    
T  21022608 tttatcaattcctaaactacacatgcaatcatcaaattgtcaattttgaaatcaaccctaaccacatacaaactac 21022683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 48256191 - 48256366
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  ||||| || ||||| |||||||||||  |||||| | | ||||||  ||    || ||| ||||||||    
T  48256191 cactttgtgtgcaaagtataaaacatattcaaattgttttcatttgccaccattcaaagccacattatgatttaaactacataggcaacaactacattca 48256290  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||||||||||||||| |||||||||||| ||||||||   | || |||||||||||||||||||||||    
T  48256291 tttatcaattcataaactacacatgcaatcatcaaattgtcaattttaaaattaaccctaaccacatgcaaactac 48256366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 50901933 - 50901758
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||| ||| ||||||||||  |||||||| |||| ||||||||||||  |||||| | | ||||||| ||   ||| ||| ||||||||    
T  50901933 cactttgtgtgcaaaatataaaacatattcaaattgtgttcatttaacaccattcaaagccacattatgaattaaacaacatagacaacaactacattca 50901834  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||| ||||||||||| |||||||||||| ||||||||   | || ||||||||||||||| |||||||    
T  50901833 tttatcaattcctaaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgtaaactac 50901758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 1089204 - 1089379
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | ||||||  ||  | || ||  ||||||||    
T  1089204 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattattatttaaactacatatgcaacatctacattca 1089303  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | || ||||||||||||  ||||| || ||| |||||||||||  ||||| ||||||||||||||||||||    
T  1089304 tttatcaatacataaactacacttgcaatgatgaaattgtcaattcatttataaaacctaaccacatgcaaactac 1089379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 96 - 179
Target Start/End: Original strand, 10753149 - 10753232
Alignment:
Q  96 tacattcatttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||||||||||| | |||||||||||||||| |||||  ||||| ||||||||||| |||||||||||||||||||||||||||    
T  10753149 tacattcatttatcaattcataaactacacatgcaatgttcaaattgtcaattcattcataaaccctaaccacatgcaaactac 10753232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 96 - 179
Target Start/End: Original strand, 10966918 - 10967001
Alignment:
Q  96 tacattcatttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||||||||||| | |||||||||||||||| |||||  ||||| ||||||||||| |||||||||||||||||||||||||||    
T  10966918 tacattcatttatcaattcataaactacacatgcaatgttcaaattgtcaattcattcataaaccctaaccacatgcaaactac 10967001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 37021703 - 37021878
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||| ||||||  |||||||| ||||| |||||||||||  |||||| | | ||||||| ||  | || ||| ||||||||    
T  37021703 cactttgtgtgcaaagtataaaagatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaacaacatatgcaacaactacattca 37021802  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||| ||||||||||| |||||||||||| ||||||||   | || ||| |||||||||| ||||||||    
T  37021803 tttatcaattcctaaactacacatgcaatcatcaaattgtcaattttaaaatcaactctaaccacatacaaactac 37021878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 68044 - 67869
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    |||||| |||||||||||| ||||||||||  |||||||| |||||  ||||||||||  |||||| | | ||||||| ||    || ||| |||||| |    
T  68044 cactttatgtgcaaagtataaaacatattcaaattgtgttcatttgctaccattcaaagccacattatcatttaaacaacataggcaacaactacattta 67945  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||||||||||||||| |||||||| ||| ||||||||   | || |||||||||||||||||||||||    
T  67944 tttatcaattcataaactacacatgcaatcattaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 67869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 14297588 - 14297403
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctacttaaacatcaatta-----------cagca 93  Q
    ||||||| ||||||||||| ||||||| ||  | |||||| ||||| |||||||||||| |||||| |  ||| |||||| |||           || ||    
T  14297588 cactttgcgtgcaaagtataaaacatactcaaaatgtgttcatttggcaccattcaaaaccacatttttattatacatcatttaaacaacataggcaaca 14297489  T
Q  94 attacattcatttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    | |||||||||||| | |||||||||||||||| ||||| || ||| ||||||||||| |||||| ||||||||||||||||||||    
T  14297488 actacattcatttatcaattcataaactacacatgcaatgatgaaattgtcaattcattcataaaacctaaccacatgcaaactac 14297403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 14315837 - 14315652
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctacttaaacatcaatta-----------cagca 93  Q
    ||||||| ||||||||||| ||||||| ||  | |||||| ||||| |||||||||||| |||||| |  ||| |||||| |||           || ||    
T  14315837 cactttgcgtgcaaagtataaaacatactcaaaatgtgttcatttggcaccattcaaaaccacatttttattatacatcatttaaacaacataggcaaca 14315738  T
Q  94 attacattcatttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    | |||||||||||| | |||||||||||||||| ||||| || ||| ||||||||||| |||||| ||||||||||||||||||||    
T  14315737 actacattcatttatcaattcataaactacacatgcaatgatgaaattgtcaattcattcataaaacctaaccacatgcaaactac 14315652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 30726361 - 30726536
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | ||||||  ||    || ||| ||||||||    
T  30726361 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaactacataggcaacaactacattca 30726460  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | || ||||||||||||  ||||| || ||| |||||||||||  ||||| |||||||| |||||||||||    
T  30726461 tttatcaatacataaactacacgtgcaatgatgaaattgtcaattcatttataaaacctaaccaaatgcaaactac 30726536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 41933243 - 41933418
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctactt-----------aaacatcaattacagca 93  Q
    ||||||||||||||||||||||||||||||  ||  | || |||||||||||||||||| |||||| |||||           |||||||||||||| ||    
T  41933243 cactttgtgtgcaaagtatcaaacatattcaaataatcttcatttgacaccattcaaaaccacattgtacttaaaacacattcaaacatcaattacaaca 41933342  T
Q  94 attacattcatttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    | |||||||||||        |||||||  ||| |||||||||||||| ||||||| ||||| ||||||| |||||||||||||||    
T  41933343 actacattcattt--------ataaact--acatgcaatcatcaaaatatcaattcctacatcaaccctatccacatgcaaactac 41933418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 11050144 - 11050222
Alignment:
Q  6 actttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctacttaaacatca 84  Q
    |||||||||||||||||||||||||||||  |||||||| ||||| |||||||||||| |||||| ||||  |||||||    
T  11050144 actttgtgtgcaaagtatcaaacatattcaaattgtgttcatttggcaccattcaaaaccacattatactctaacatca 11050222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 148
Target Start/End: Complemental strand, 46436697 - 46436553
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| ||||||||| || |||| | | | ||||||| ||    || ||| |||||||     
T  46436697 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcagaaccacaatatcatttaaacagcataagcaacaactacattcg 46436598  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaatt 148  Q
    ||||   |||||||||||||||| |||||||||||| ||||||||    
T  46436597 tttattaattcataaactacacatgcaatcatcaaattgtcaatt 46436553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 40357900 - 40358075
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||| ||||||||||||| ||||||||||  | |||||| ||||| |||||||||||  |||||| | | ||||||| ||    || ||| ||||||||    
T  40357900 cacttggtgtgcaaagtataaaacatattcaaactgtgttcatttgccaccattcaaatccacattatgatttaaacaacataggcaacaactacattca 40357999  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
     ||| | |||  ||||||||||| |||||||||||| | ||||||   | || |||||||||||||| ||||||||    
T  40358000 attatcaatttctaaactacacatgcaatcatcaaattctcaattttgaaatcaaccctaaccacatacaaactac 40358075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 183
Target Start/End: Original strand, 55279988 - 55280042
Alignment:
Q  129 caatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactaccaaa 183  Q
    ||||||||||||||||||||| ||||| |||| ||||||||||| ||||||||||    
T  55279988 caatcatcaaaatgtcaattcctacatcaaccttaaccacatgcgaactaccaaa 55280042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 44679695 - 44679774
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctacttaaacatca 84  Q
    ||||||||||||||| ||||||||||| ||  | ||||||  |||| ||||||||||||||||||| ||||  |||||||    
T  44679695 cactttgtgtgcaaaatatcaaacatactcaaaatgtgttcttttgccaccattcaaaatcacattatactctaacatca 44679774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 50023163 - 50023242
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctacttaaacatca 84  Q
    ||||||||||||||||||||||||||| ||  | ||||||  |||| |||||||||||| |||||| ||||  |||||||    
T  50023163 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttcttttgccaccattcaaaaccacattatactctaacatca 50023242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 50030281 - 50030360
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctacttaaacatca 84  Q
    ||||||||||||||||||||||||||| ||  | ||||||  |||| |||||||||||| |||||| ||||  |||||||    
T  50030281 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttcttttgccaccattcaaaaccacattatactctaacatca 50030360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 6181410 - 6181475
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacatt 70  Q
    ||||||||||||||||||||||||||| ||  | ||||||| |||| ||||| |||||| ||||||    
T  6181410 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgccaccaatcaaaaccacatt 6181475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 9892888 - 9892953
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacatt 70  Q
    ||||||||||||||||||||||||||| ||  | ||||||  |||| |||||||||||| ||||||    
T  9892888 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttcttttgccaccattcaaaaccacatt 9892953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 31422150 - 31422085
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacatt 70  Q
    ||||||||||||||||||||||||||| ||  | ||||||| |||| ||||| |||||| ||||||    
T  31422150 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgccaccaatcaaaaccacatt 31422085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 41798615 - 41798672
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaa 62  Q
    ||||||||||||||||||| ||||||||||  |||||||| |||||  ||||||||||    
T  41798615 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgctaccattcaaa 41798672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 49090873 - 49090808
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacatt 70  Q
    ||||||||||||||||||||||||||| ||  | ||||||| |||| ||||| |||||| ||||||    
T  49090873 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgccaccaatcaaaaccacatt 49090808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 49165486 - 49165421
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacatt 70  Q
    ||||||||||||||| ||||||||||| ||  | ||||||| |||| |||||||||||| ||||||    
T  49165486 cactttgtgtgcaaactatcaaacatactcaaaatgtgttattttgccaccattcaaaaccacatt 49165421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 182
Target Start/End: Complemental strand, 49165347 - 49165308
Alignment:
Q  143 tcaattcatacataaaccctaaccacatgcaaactaccaa 182  Q
    ||||||||||||| ||||||||||||||| ||||||||||    
T  49165347 tcaattcatacattaaccctaaccacatgaaaactaccaa 49165308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 181
Target Start/End: Original strand, 6181549 - 6181587
Alignment:
Q  143 tcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    ||||||||||||| ||||||||||||||| |||||||||    
T  6181549 tcaattcatacattaaccctaaccacatgaaaactacca 6181587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 181
Target Start/End: Complemental strand, 49090734 - 49090696
Alignment:
Q  143 tcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    ||||||||||||| ||||||||||||||| |||||||||    
T  49090734 tcaattcatacattaaccctaaccacatgaaaactacca 49090696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 3184285 - 3184232
Alignment:
Q  128 gcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    |||||||||||||  ||||||| ||||| |||||||| |||||| |||||||||    
T  3184285 gcaatcatcaaaaattcaattcctacatcaaccctaaacacatgaaaactacca 3184232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 31422022 - 31421973
Alignment:
Q  132 tcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    |||| |||| |||||||| ||||| ||||||||||||||| |||||||||    
T  31422022 tcataaaaaagtcaattcctacatcaaccctaaccacatgaaaactacca 31421973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 50023287 - 50023340
Alignment:
Q  128 gcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    |||||||||||||  ||||||| ||||| ||||||||||||||  |||||||||    
T  50023287 gcaatcatcaaaaattcaattcctacatcaaccctaaccacataaaaactacca 50023340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 50193807 - 50193754
Alignment:
Q  128 gcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    |||||||||||||  ||||||| ||||| |||||||||| |||| |||||||||    
T  50193807 gcaatcatcaaaaattcaattcctacatcaaccctaaccccatgaaaactacca 50193754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 136; Significance: 4e-71; HSPs: 45)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 5 - 192
Target Start/End: Original strand, 31045214 - 31045401
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctacttaaacatcaattacagcaattacattcat 104  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||| |||||||||||||||||||  || ||||||| |    
T  31045214 cactttgtgtgcaaagtatcaaacatattcacattgtgttattttgacaccattcaaaaccacattttacttaaacatcaattacattaactacattcgt 31045313  T
Q  105 ttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactaccaaaatttacaac 192  Q
    ||| | ||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31045314 ttatcaatttataaactacacatgcaatcatcaaaatgtcaattcattcataaaccctaaccacatgcaaactaccaaaatttacaac 31045401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 42756606 - 42756431
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||   ||||| | | ||||||| ||   ||| ||| ||||| ||    
T  42756606 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagcgacattatgatttaaacaacatagacaacaactacatcca 42756507  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||||||||||||||| |||||||||||| ||||||||   | || |||||||||||||||||||||||    
T  42756506 tttatcaattcataaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 42756431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 48889196 - 48889021
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  ||| |||| ||||  ||||||||||| ||||||| | | ||||||| ||    || ||| ||||||||    
T  48889196 cactttgtgtgcaaagtataaaacatattcaaattatgttcatttaccaccattcaaagtcacattatgatttaaacaacataggcaacaactacattca 48889097  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||||||||||||||| |||||||||||| ||||||||   | || |||||||||||||||||||||||    
T  48889096 tttatcaattcataaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 48889021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 20917637 - 20917812
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | || |||| ||    || ||| ||||||||    
T  20917637 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgattttaacaacataggcaacaactacattca 20917736  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||||||||||| ||| |||||||||||| ||||||||   | || |||||||||||||||||||||||    
T  20917737 tttatcaattcataaactatacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 20917812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 20926599 - 20926774
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | || |||| ||    || ||| ||||||||    
T  20926599 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgattttaacaacataggcaacaactacattca 20926698  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||||||||||| ||| |||||||||||| ||||||||   | || |||||||||||||||||||||||    
T  20926699 tttatcaattcataaactatacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 20926774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 49196067 - 49196242
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | || |||| ||    || ||| ||||||||    
T  49196067 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgattttaacaacataggcaacaactacattca 49196166  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||||||||||||||| |||||||||||| ||||||||   | || |||| ||||||||||||||||||    
T  49196167 tttatcaattcataaactacacatgcaatcatcaaattgtcaattttaaaatcaaccttaaccacatgcaaactac 49196242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 597211 - 597036
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||||||||||| ||  | ||||||  |||| |||||||||||  |||||| | | ||||||| ||    || ||| ||||||||    
T  597211 cactttgtgtgcaaagtatcaaacataatcaaaatgtgttcttttgccaccattcaaagccacattatgatttaaacaacatgggcaacaactacattca 597112  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||| ||||||||||| |||||||||||| |||||||   || || |||||||||||||||||||||||    
T  597111 tttatcaattcctaaactacacatgcaatcatcaaattgtcaatatttaaatcaaccctaaccacatgcaaactac 597036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 4007943 - 4008118
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | ||||||| ||    || ||| ||||||||    
T  4007943 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaacaacataggcaacaactacattca 4008042  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||| ||||||||||| ||||||||| || ||||||||   | || |||||||||||||| ||||||||    
T  4008043 tttatcaattcctaaactacacatgcaatcatcgaattgtcaattttaaaatcaaccctaaccacatacaaactac 4008118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 30255622 - 30255797
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | ||||||| ||    || ||| ||||||||    
T  30255622 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaacaacataggcaacaactacattca 30255721  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | ||||| |||||| ||| |||||||||||| |||||| |   | || |||||||||||||||||||||||    
T  30255722 tttagcaattcacaaactaaacatgcaatcatcaaattgtcaactttaaaatcaaccctaaccacatgcaaactac 30255797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 42165615 - 42165440
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||| ||||||  |||||||| ||||| |||||||||||  |||||| | | ||||||| ||    || ||| ||||||||    
T  42165615 cactttgtgtgcaaagtataaaatatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaacaacataggcaacaactacattca 42165516  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||| ||||||||||| |||||||||||| ||||||||   | || |||||||||||||| ||||||||    
T  42165515 tttatcaattcctaaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatacaaactac 42165440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 50216498 - 50216673
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    |||||||||||||||| || ||||||||||  |||||||| ||||| |||||||||||| |||||| | | ||||||| ||    || ||| ||||||||    
T  50216498 cactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccattcaaaaccacattatgatttaaacaacataggcaacaactacattca 50216597  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||| |||| |||||| |||||||||||| | ||||||   | || |||||||||||||||||||||||    
T  50216598 tttatcaattcctaaattacacatgcaatcatcaaattatcaattttaaaatcaaccctaaccacatgcaaactac 50216673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 50963407 - 50963232
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||| ||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | ||||||| ||    || ||| ||||||||    
T  50963407 cactttgtgtgtaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaacaacataggcaacaactacattca 50963308  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||| ||||||||||| |||||||||||| ||||||||   | || |||||||||||||| ||||||||    
T  50963307 tttatcaattcctaaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatacaaactac 50963232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 3976159 - 3975984
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | ||||||  ||    || ||| ||||||||    
T  3976159 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaactacataggcaacaactacattca 3976060  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
     || || |||  ||||||||||| |||||||||||| ||||||||  || || |||||||||||||| ||||||||    
T  3976059 attgccaatttctaaactacacatgcaatcatcaaattgtcaatttttaaatcaaccctaaccacatacaaactac 3975984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 179
Target Start/End: Complemental strand, 44230162 - 44229991
Alignment:
Q  9 ttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctactt-aaacatcaattacagcaattacattcattta 107  Q
    ||||||||||||||| ||||||||||  |||||||| ||||| |||| ||||||  |||||| |  || ||||| ||    || ||| ||||||||||||    
T  44230162 ttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccgttcaaagccacattatgttttaaacaacataggcaacaactacattcattta 44230063  T
Q  108 ccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
     | |||| ||||||||||| |||||||||||| ||||||||   | || |||||||||||||||||||||||    
T  44230062 tcaattcctaaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 44229991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 3501512 - 3501687
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | ||||||| ||    || ||| ||||||||    
T  3501512 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaacccacattatgatttaaacaacataggcaacaactacattca 3501611  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
     ||| | |||  ||||||||||| |||||||||||| | ||||||   | || |||||||||||||| ||||||||    
T  3501612 attatcaatttctaaactacacatgcaatcatcaaattctcaattttgaaatcaaccctaaccacatacaaactac 3501687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 47073827 - 47074002
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||| ||||||  |||||||| ||||| |||||||||||  |||||| | | |||||||  |    || ||| ||||||||    
T  47073827 cactttgtgtgcaaagtataaaatatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaacaatataggcaacaactacattca 47073926  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||| ||||||||||| ||| |||||||| ||||||||   | || |||||||||||||| ||||||||    
T  47073927 tttatcaattcctaaactacacatgcattcatcaaattgtcaattttaaaatcaaccctaaccacatacaaactac 47074002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 51807413 - 51807247
Alignment:
Q  14 tgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattcatttaccgat 112  Q
    |||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | ||||||| ||   ||| ||| |||||||||||| | ||    
T  51807413 tgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaacaacatagacaacaactacattcatttatcaat 51807314  T
Q  113 tcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |  ||||||||||| |||||||||||| ||||||||   | || || | ||||||||||||||||||    
T  51807313 ttctaaactacacatgcaatcatcaaattgtcaattttaaaatcaatcataaccacatgcaaactac 51807247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 52391016 - 52391081
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacatt 70  Q
    ||||||||||||||||||||||||||||||  ||||||||| |||| |||||||||||| ||||||    
T  52391016 cactttgtgtgcaaagtatcaaacatattcaaattgtgttattttgccaccattcaaaaccacatt 52391081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 42805885 - 42806016
Alignment:
Q  8 tttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattcattt 106  Q
    |||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | ||||||| ||   ||| ||| |||||||||||    
T  42805885 tttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatcatttaaacaacatagacaacaactacattcattt 42805984  T
Q  107 accgattcataaactacacacgcaatcatcaa 138  Q
    | | |||||||||||| ||| ||||| |||||    
T  42805985 atcaattcataaactatacatgcaattatcaa 42806016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 29009312 - 29009247
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacatt 70  Q
    ||||||||||||||||||||||||||| ||  | ||||||| |||| |||||||||||| ||||||    
T  29009312 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgccaccattcaaaaccacatt 29009247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 4172135 - 4172076
Alignment:
Q  128 gcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactaccaaaattta 188  Q
    |||||||||||||| ||||||| ||||| ||||||||| |||||||||||| |||||||||    
T  4172135 gcaatcatcaaaatatcaattcctacatcaaccctaacaacatgcaaacta-caaaattta 4172076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 36127889 - 36127810
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctacttaaacatca 84  Q
    ||||||||||||||||||||||||||| ||  | ||||||  |||| |||||||||||| |||||| ||||  |||||||    
T  36127889 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttcttttgccaccattcaaaaccacattatactctaacatca 36127810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 41612820 - 41612741
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctacttaaacatca 84  Q
    ||||||||||||||||||||||||||| ||  | ||||||  |||| |||||||||||| |||||| ||||  |||||||    
T  41612820 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttcttttgccaccattcaaaaccacattatactctaacatca 41612741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 48563377 - 48563323
Alignment:
Q  8 tttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaa 62  Q
    |||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||    
T  48563377 tttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaa 48563323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 16611530 - 16611465
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacatt 70  Q
    ||||||||||||||||||||||||||| ||  | ||||||  |||| |||||||||||| ||||||    
T  16611530 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttcttttgccaccattcaaaaccacatt 16611465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 17567808 - 17567861
Alignment:
Q  128 gcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    |||||||||||||  ||||||| ||||| ||||||||||||||| |||||||||    
T  17567808 gcaatcatcaaaaattcaattcctacatcaaccctaaccacatgaaaactacca 17567861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 22047723 - 22047788
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacatt 70  Q
    ||||||||||||||||||||||||||| ||  | ||||||  |||| |||||||||||| ||||||    
T  22047723 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttcttttgccaccattcaaaaccacatt 22047788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 34045701 - 34045652
Alignment:
Q  132 tcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    |||||||||  ||||||||||||| ||||||||||||||| |||||||||    
T  34045701 tcatcaaaaattcaattcatacattaaccctaaccacatgaaaactacca 34045652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 42903810 - 42903875
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacatt 70  Q
    ||||||||||||||||||||||||||| ||  | ||||||| |||| ||||| |||||| ||||||    
T  42903810 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgccaccaatcaaaaccacatt 42903875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 46389414 - 46389349
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacatt 70  Q
    ||||||||||||||||||||||||||| ||  | ||||||| |||| ||||| |||||| ||||||    
T  46389414 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgccaccaatcaaaaccacatt 46389349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 49144210 - 49144259
Alignment:
Q  132 tcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    |||||||||  ||||||||||||| ||||||||||||||| |||||||||    
T  49144210 tcatcaaaaattcaattcatacattaaccctaaccacatgaaaactacca 49144259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 50480404 - 50480469
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacatt 70  Q
    ||||||||||||||||||||||||||| ||  | ||||||| |||| ||||| |||||| ||||||    
T  50480404 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgccaccaatcaaaaccacatt 50480469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 54386576 - 54386511
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacatt 70  Q
    ||||||||||||||||||||||||||| ||  | ||||||| |||| ||||| |||||| ||||||    
T  54386576 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgccaccaatcaaaaccacatt 54386511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 179
Target Start/End: Complemental strand, 48563289 - 48563221
Alignment:
Q  111 attcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    ||||||| |||||||| |||||||||||| ||||||||   | || |||| ||||||||||||||||||    
T  48563289 attcatagactacacatgcaatcatcaaattgtcaattttaaaatcaaccttaaccacatgcaaactac 48563221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 179
Target Start/End: Complemental strand, 4178133 - 4178082
Alignment:
Q  128 gcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||||||||||||| ||||||| ||||| |||||||||  ||||||||||||    
T  4178133 gcaatcatcaaaatatcaattcctacatcaaccctaacagcatgcaaactac 4178082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 17567684 - 17567763
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctacttaaacatca 84  Q
    ||||||||||||||||||||||||||| ||  | ||||||  |||| ||||||| |||| |||||| ||||  |||||||    
T  17567684 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttcttttgccaccattgaaaaccacattatactctaacatca 17567763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 4178256 - 4178198
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaa 63  Q
    |||||||||||||||||||||||  |||||  ||| | || ||||||||||||||||||    
T  4178256 cactttgtgtgcaaagtatcaaaagtattcaaattatcttcatttgacaccattcaaaa 4178198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 181
Target Start/End: Complemental strand, 46389275 - 46389237
Alignment:
Q  143 tcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    ||||||||||||| ||||||||||||||| |||||||||    
T  46389275 tcaattcatacattaaccctaaccacatgaaaactacca 46389237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 181
Target Start/End: Original strand, 46701784 - 46701822
Alignment:
Q  143 tcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    ||||||||||||| ||||||||||||||| |||||||||    
T  46701784 tcaattcatacattaaccctaaccacatgaaaactacca 46701822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 181
Target Start/End: Complemental strand, 54386437 - 54386399
Alignment:
Q  143 tcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    ||||||||||||| ||||||||||||||| |||||||||    
T  54386437 tcaattcatacattaaccctaaccacatgaaaactacca 54386399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 2274534 - 2274599
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacatt 70  Q
    ||||||||||||||||||||||||||| ||  | ||||||  |||  |||||||||||| ||||||    
T  2274534 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttcttttcccaccattcaaaaccacatt 2274599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 20350973 - 20350920
Alignment:
Q  128 gcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    |||||||| ||||  ||||||| ||||| ||||||||||||||| |||||||||    
T  20350973 gcaatcataaaaaattcaattcctacatcaaccctaaccacatgaaaactacca 20350920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 41612696 - 41612643
Alignment:
Q  128 gcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    ||||| |||||||  ||||||| ||||| ||||||||||||||| |||||||||    
T  41612696 gcaattatcaaaaattcaattcctacattaaccctaaccacatgaaaactacca 41612643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 49144083 - 49144147
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacatt 70  Q
    ||||||||||||||||||||||| ||||||  | ||||||| |||| ||||| |||||| ||||||    
T  49144083 cactttgtgtgcaaagtatcaaa-atattcaaaatgtgttattttgccaccaatcaaaaccacatt 49144147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 50480532 - 50480581
Alignment:
Q  132 tcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    |||| |||| |||||||| ||||| ||||||||||||||| |||||||||    
T  50480532 tcataaaaaagtcaattcctacatcaaccctaaccacatgaaaactacca 50480581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 3 - 191
Target Start/End: Original strand, 251094 - 251282
Alignment:
Q  3 atcactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctacttaaacatcaattacagcaattacattc 102  Q
    |||||||| |||| ||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||| |||||||    
T  251094 atcactttatgtgtaaaatatcaaacatattcttattgtgttaatttgacaccattcaaaaccacattcttcttaaacatcaattacatcaactacattc 251193  T
Q  103 atttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactaccaaaatttacaa 191  Q
    ||||| | |||||||||||||||| ||||| ||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||    
T  251194 atttatcaattcataaactacacatgcaattatcaaaatgccaattcatacgtaaaccctaaccatatgcaaactaccaaaatttacaa 251282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 6 - 179
Target Start/End: Complemental strand, 24249934 - 24249761
Alignment:
Q  6 actttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctacttaaacatcaattacagcaattacattcatt 105  Q
    ||||| |||||||||||||||||||||||  | |||| | |||||||||||||||||| |||||| ||||||||||||||||||| ||| ||||||||||    
T  24249934 actttatgtgcaaagtatcaaacatattcaaaatgtgctcatttgacaccattcaaaaccacattatacttaaacatcaattacaacaactacattcatt 24249835  T
Q  106 taccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    || | |||||||||||||||| |||||||||||| ||||||||| || || |||||||||||||||||||||||    
T  24249834 tatcaattcataaactacacatgcaatcatcaaattgtcaattcctatatcaaccctaaccacatgcaaactac 24249761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 12 - 192
Target Start/End: Complemental strand, 22495363 - 22495173
Alignment:
Q  12 tgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctacttaaac-----------atcaattacagcaattacat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||           |||||||||| ||| |||||    
T  22495363 tgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaaccacattctacttaaacatcatctaaacatcaattacatcaactacat 22495264  T
Q  101 tcatttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactaccaaaatttacaac 192  Q
    ||||||| | |||| ||||||||||| |||| |||||||||||||||||||||  ||| ||||| || |||||||||||| |||||||||||    
T  22495263 tcatttatcaattcgtaaactacacatgcaaccatcaaaatgtcaattcatac-gaaaacctaatcatatgcaaactacccaaatttacaac 22495173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 5 - 173
Target Start/End: Original strand, 5303841 - 5304010
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | ||||||| ||   ||| ||| ||||||||    
T  5303841 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaacaacatagacaacaactacattca 5303940  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgca 173  Q
    |||| | |||||||||||||||| |||||||| ||| ||||||||   | || |||||||||||||||||    
T  5303941 tttatcaattcataaactacacatgcaatcatgaaattgtcaattttaaaatcaaccctaaccacatgca 5304010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 39602168 - 39601993
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | ||||||| ||    || ||| ||||||||    
T  39602168 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaacaacataggcaacaactacattca 39602069  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||| ||||||||||| |||||||||||| ||||||||   | || |||||||||||||| ||||||||    
T  39602068 tttatcaattcctaaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatacaaactac 39601993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 39846606 - 39846781
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    |||||||||| |||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | ||||||| ||    || ||| ||||||||    
T  39846606 cactttgtgtacaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaacaacataggcaacaactacattca 39846705  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||| ||||||||||| |||||||||||| ||||||||   | || |||||||||||||||||||||||    
T  39846706 tttatcaattcctaaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 39846781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 42485158 - 42485333
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctactt-aaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| || || ||||  ||    || ||  ||||||||    
T  42485158 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattataatttaaactacataggcaacatctacattca 42485257  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | || ||||||||||||| ||||| || ||| |||||||||||  ||||| ||||||||||||||||||||    
T  42485258 tttatcaatacataaactacacatgcaatgatgaaattgtcaattcatttataaaacctaaccacatgcaaactac 42485333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 5 - 176
Target Start/End: Original strand, 15036348 - 15036520
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | ||||||| ||    || ||| ||||||||    
T  15036348 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaacaacataggcaacaactacattca 15036447  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaac 176  Q
    |||| | |||| | ||||||||| |||||||||||| ||||||||   | || |||||||||||||| |||||    
T  15036448 tttatcaattcctgaactacacatgcaatcatcaaattgtcaattttgaaatcaaccctaaccacatacaaac 15036520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 40076870 - 40077045
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||| ||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | ||||||| ||    || ||  ||||||||    
T  40076870 cactttgtgtgcaaattataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaacaacataggcaacagctacattca 40076969  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | ||||||||||||||||   |||||||||| ||||||||   | || |||||||||||||||||||||||    
T  40076970 tttatcaattcataaactacacatataatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 40077045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 43188502 - 43188327
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    |||||||| |||||||||| ||||||||||  || ||||| ||||| |||||||||||  |||||| | | ||||||| ||   ||| ||| ||||||||    
T  43188502 cactttgtatgcaaagtataaaacatattcaaatcgtgttcatttgccaccattcaaagccacattatgatttaaacaacatagacaacaactacattca 43188403  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    ||||   |||| ||||||||||| |||||||||||| ||||||||   | || |||| ||||||||||||||||||    
T  43188402 tttattaattcctaaactacacatgcaatcatcaaattgtcaattttaaaatcaaccataaccacatgcaaactac 43188327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 148
Target Start/End: Complemental strand, 39252464 - 39252320
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  ||||| || ||||| |||||||||||  |||||| | | ||||||| ||  | || ||| ||||||||    
T  39252464 cactttgtgtgcaaagtataaaacatattcaaattgtattcatttgccaccattcaaagccacattatgatttaaacaacatatgcaacaactacattca 39252365  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaatt 148  Q
    ||||   |||| ||||||||||| |||||||||||| ||||||||    
T  39252364 tttattaattcctaaactacacatgcaatcatcaaattgtcaatt 39252320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 179
Target Start/End: Original strand, 41249700 - 41249868
Alignment:
Q  12 tgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattcatttaccg 110  Q
    |||||||||||| || |||||||  |||||||| ||||| |||||||||||  |||||| | | ||||||| ||    || ||| |||||||||||| |     
T  41249700 tgtgcaaagtataaagcatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaacaacataggcaacaactacattcatttatca 41249799  T
Q  111 attcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| ||||||||||| |||||||||||| ||||||||   | ||  ||||||||||||||||||||||    
T  41249800 attcctaaactacacatgcaatcatcaaattgtcaattttaaaatctaccctaaccacatgcaaactac 41249868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 96 - 179
Target Start/End: Original strand, 34822729 - 34822812
Alignment:
Q  96 tacattcatttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||||||||||| | |||||||||||||||| |||||||||||| ||||||||   | || |||||||||||||||||||||||    
T  34822729 tacattcatttatcaattcataaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 34822812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 43211958 - 43211783
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||  |||||||||||  |||||| | | ||||||| ||    || ||| ||||||||    
T  43211958 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttcccaccattcaaagccacattatgatttaaacaacataggcaacaactacattca 43211859  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||| ||||||||||| ||||||||| || ||||||||   | || |||||||| ||||| ||||||||    
T  43211858 tttatcaattcctaaactacacatgcaatcatcgaattgtcaattttaaaatcaaccctaagcacatacaaactac 43211783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 2984575 - 2984400
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctacttaaacatcaattacag--caattacattc 102  Q
    ||||||||||||||||||| |||| |||||  |||||||| ||||| || ||||||||| |||||| |||||||| |||| | | ||  |||||||||||    
T  2984575 cactttgtgtgcaaagtatgaaacttattcaaattgtgtttatttggcatcattcaaaaccacattatacttaaaaatcattcaaagatcaattacattc 2984476  T
Q  103 atttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    || ||     || | ||| ||||| |||||||||||| ||||||||   | || |||||||||||||||||||||||    
T  2984475 atctataacatc-ttaacaacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 2984400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 37327236 - 37327171
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacatt 70  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||||||||||    
T  37327236 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaaatcacatt 37327171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 489249 - 489424
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctactt-aaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| |||||||||   |||||||| |||||  ||||||||||  |||||| || || ||||  ||    || ||  ||||||||    
T  489249 cactttgtgtgcaaagtataaaacatatttaaattgtgttcatttgcaaccattcaaagccacattataatttaaactacataggcaacatctacattca 489348  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | || ||||||||||||| ||||| || ||| |||||||||||   |||| ||||||||||||||||||||    
T  489349 tttatcaatacataaactacacatgcaatgatgaaattgtcaattcatttgtaaaacctaaccacatgcaaactac 489424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 179
Target Start/End: Complemental strand, 37327165 - 37327082
Alignment:
Q  95 ttacattcatttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    ||||||||||||| | |||||||||||||||| |||||||||||| ||||||||   | || |||||||| ||||||||||||||    
T  37327165 ttacattcatttatcaattcataaactacacatgcaatcatcaaattgtcaattttaaaattaaccctaa-cacatgcaaactac 37327082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 96 - 179
Target Start/End: Original strand, 25864652 - 25864734
Alignment:
Q  96 tacattcatttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||||||||||| | |||||||| ||||||| |||||||||||| ||||||||   | || |||||||||||||||||||||||    
T  25864652 tacattcatttatcaattcataa-ctacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 25864734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 5677399 - 5677345
Alignment:
Q  128 gcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactaccaa 182  Q
    |||||||||||||| ||||||| ||||| ||||||||||||||||| ||||||||    
T  5677399 gcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcagactaccaa 5677345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 179
Target Start/End: Original strand, 39938837 - 39939011
Alignment:
Q  6 actttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattcat 104  Q
    |||||||||||||||||| |||| |||||  |||||||| ||||| |||||||||||  | |||| | | ||||||| ||    || ||| |||||||||    
T  39938837 actttgtgtgcaaagtataaaacttattcaaattgtgttcatttgccaccattcaaagccccattatgatttaaacaacataggcaacaactacattcat 39938936  T
Q  105 ttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    ||| | |||| ||||||| ||| | |||||||||| | ||||||   | || ||||||||||||||| |||||||    
T  39938937 ttatcaattcctaaactatacatgtaatcatcaaattatcaattttaaaatcaaccctaaccacatgtaaactac 39939011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 35552118 - 35552039
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctacttaaacatca 84  Q
    ||||||||||||||||||||||||||| ||  | ||||||  |||| |||||||||||| |||||| ||||  |||||||    
T  35552118 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttcttttgccaccattcaaaaccacattatactctaacatca 35552039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 179
Target Start/End: Complemental strand, 45128078 - 45128027
Alignment:
Q  128 gcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||||||||||||| ||||||| ||||| |||| ||||||||||||||||||    
T  45128078 gcaatcatcaaaatttcaattcctacatcaaccataaccacatgcaaactac 45128027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 25147 - 25212
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacatt 70  Q
    ||||||||||||||||||||||||||| ||  | ||||||| |||| ||||| |||||| ||||||    
T  25147 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgccaccaatcaaaaccacatt 25212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 1052977 - 1052912
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacatt 70  Q
    ||||||||||||||||||||||||||| ||  | ||||||| |||| ||||| |||||| ||||||    
T  1052977 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgccaccaatcaaaaccacatt 1052912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 23021941 - 23022006
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacatt 70  Q
    ||||||||||||||||||||||||||| ||  | ||||||| |||| ||||| |||||| ||||||    
T  23021941 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgccaccaatcaaaaccacatt 23022006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 26659899 - 26659834
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacatt 70  Q
    ||||||||||||||||||||||||||| ||  | ||||||| |||| ||||| |||||| ||||||    
T  26659899 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgccaccaatcaaaaccacatt 26659834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 45064582 - 45064519
Alignment:
Q  116 taaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    ||||||||||| |||||||||||| ||||||||   | || |||||||||||||| ||||||||    
T  45064582 taaactacacatgcaatcatcaaattgtcaattttgaaatcaaccctaaccacatacaaactac 45064519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 45128202 - 45128123
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctacttaaacatca 84  Q
    ||||||||||||||||||||||||||| ||  |  |||||  |||| |||||||||||| |||||| ||||  |||||||    
T  45128202 cactttgtgtgcaaagtatcaaacatactcaaaacgtgttcttttgccaccattcaaaaccacattatactctaacatca 45128123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 181
Target Start/End: Original strand, 25286 - 25324
Alignment:
Q  143 tcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    ||||||||||||| ||||||||||||||| |||||||||    
T  25286 tcaattcatacattaaccctaaccacatgaaaactacca 25324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 181
Target Start/End: Complemental strand, 22510854 - 22510816
Alignment:
Q  143 tcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    ||||||||||||| ||||||||||||||| |||||||||    
T  22510854 tcaattcatacattaaccctaaccacatgaaaactacca 22510816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 181
Target Start/End: Complemental strand, 26659760 - 26659722
Alignment:
Q  143 tcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    ||||||||||||| ||||||||||||||| |||||||||    
T  26659760 tcaattcatacattaaccctaaccacatgaaaactacca 26659722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 20857614 - 20857561
Alignment:
Q  128 gcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    |||||||||||||  ||||||| ||||| |||| |||||||||| |||||||||    
T  20857614 gcaatcatcaaaaattcaattcctacatcaaccttaaccacatgaaaactacca 20857561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 23022069 - 23022118
Alignment:
Q  132 tcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    |||| |||| |||||||| ||||| ||||||||||||||| |||||||||    
T  23022069 tcataaaaaagtcaattcctacatcaaccctaaccacatgaaaactacca 23022118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 20857735 - 20857659
Alignment:
Q  8 tttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctacttaaacatca 84  Q
    |||||||||||||||||||||||| ||  | ||||||  ||||  ||||||||||| |||||| ||||  |||||||    
T  20857735 tttgtgtgcaaagtatcaaacatactcaaaatgtgttcttttgcaaccattcaaaaccacattatactctaacatca 20857659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 8e-45; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 17741068 - 17741253
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctacttaaacatca-----------attacagca 93  Q
    ||||||||||||||||||||||||||||||  |||||||| || || |||||||||||| |||||| |||||||||||||           |||||| ||    
T  17741068 cactttgtgtgcaaagtatcaaacatattcaaattgtgttcatatggcaccattcaaaaccacattatacttaaacatcatttaaatatcaattacaaca 17741167  T
Q  94 attacattcatttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    | |||||||||||| | |||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  17741168 actacattcatttatcaattcataaactacacatgcaatcttcaaaatgtcaattcattcataaaccctaaccacatgcaaactac 17741253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 36978051 - 36977876
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  ||| |||| ||||  ||||||||||| ||||||| | | ||||||| ||    || ||| ||||||||    
T  36978051 cactttgtgtgcaaagtataaaacatattcaaattatgttcatttaccaccattcaaagtcacattatgatttaaacaacataggcaacaactacattca 36977952  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||||||||||||||| |||||||||||| ||||||||   | || |||||||||||||||||||||||    
T  36977951 tttatcaattcataaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 36977876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 39460981 - 39460806
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | |||||||  |    || ||| ||||||||    
T  39460981 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaacaaaataggcaacaactacattca 39460882  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||||||||||||||| |||||||||||| ||||||||   | || |||||||||||||||||||||||    
T  39460881 tttatcaattcataaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 39460806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 47776787 - 47776612
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | ||||||| ||    || ||| ||||||||    
T  47776787 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgtcaccattcaaagccacattatgatttaaacaacataggcaacaactacattca 47776688  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||| ||||||||||| |||||||||||| ||||||||   | || |||||||||||||||||||||||    
T  47776687 tttatcaattcctaaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 47776612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 10517433 - 10517258
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | ||||||| ||    || ||| ||||||||    
T  10517433 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaacaacataggcaacaactacattca 10517334  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||| ||||||||||| |||||||||||| ||||||||   | || |||||||||||||| ||||||||    
T  10517333 tttatcaattcctaaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatacaaactac 10517258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 15073848 - 15074023
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | ||||||  ||    || ||| ||||||||    
T  15073848 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaactacataggcaacaactacattca 15073947  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | || ||||||||||||| ||||| || ||| |||||||||||  ||||| ||||||||||||||||||||    
T  15073948 tttatcaatacataaactacacatgcaatgatgaaattgtcaattcatttataaaacctaaccacatgcaaactac 15074023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 17835529 - 17835354
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | ||||||| ||    || ||| ||||||||    
T  17835529 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaacaacataggcaacaactacattca 17835430  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||| ||||||||||| |||||||||||| ||||||||   | || |||| ||||||||| ||||||||    
T  17835429 tttatcaattcctaaactacacatgcaatcatcaaattgtcaattttaaaatcaaccttaaccacatacaaactac 17835354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 27453239 - 27453414
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | ||||||| ||     | ||| ||||||||    
T  27453239 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaacaacataggtaacaactacattca 27453338  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||| ||||||||||| |||||||||||| ||||||||   | || ||| |||||||||||||||||||    
T  27453339 tttatcaattcctaaactacacatgcaatcatcaaattgtcaattttgaaatcaactctaaccacatgcaaactac 27453414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 47672705 - 47672880
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | ||||||| ||    || ||| ||||||||    
T  47672705 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaacaacataggcaacaactacattca 47672804  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | ||||||| | || ||| |||||||||||| ||||||||   | || |||||||||||||||||||||||    
T  47672805 tttatcaattcatagattatacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 47672880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 178
Target Start/End: Original strand, 42507647 - 42507821
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | ||||||  ||    || ||| ||||||||    
T  42507647 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaactacataggcaacaactacattca 42507746  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaacta 178  Q
    |||| | || ||||||||||||| ||||| || ||| ||| |||||||  ||||| |||||||||||||||||||    
T  42507747 tttatcaatacataaactacacatgcaatgatgaaattgttaattcatttataaaacctaaccacatgcaaacta 42507821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 9494415 - 9494590
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | ||||||| ||    || ||| ||||||||    
T  9494415 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaacaacataggcaacaactacattca 9494514  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | ||||||||| |||||| |||| ||||||| | ||||||   | || ||||| |||||||||||||||||    
T  9494515 tttatcaattcataaattacacatgcaaccatcaaattttcaattttaaaatcaacccaaaccacatgcaaactac 9494590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 34738819 - 34738644
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||| |||||| || ||||||||||  |||||||| ||||| |||||||||||  |||||| | | ||||||| ||     | ||| ||||||||    
T  34738819 cactttgtgagcaaagcataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaacaacataggtaacaactacattca 34738720  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||| ||||||||||| |||||||||||| ||||||||   | || |||||||||||||||||||||||    
T  34738719 tttatcaattcctaaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 34738644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 37340757 - 37340582
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | ||||||| ||    || ||| ||||||||    
T  37340757 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaacaacataggcaacaagtacattca 37340658  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||  | |||||||||||||||| | |||||||||| ||||||||   | || || ||||||||||| ||||||||    
T  37340657 tttttcaattcataaactacacatgaaatcatcaaattgtcaattttaaaatcaatcctaaccacatccaaactac 37340582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 46740165 - 46740246
Alignment:
Q  3 atcactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctacttaaacatca 84  Q
    ||||||||||||||||||||||||||||| ||  | ||||||  |||| ||||||||||||||||||| ||||  |||||||    
T  46740165 atcactttgtgtgcaaagtatcaaacatactcaaaatgtgttcttttgccaccattcaaaatcacattatactctaacatca 46740246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 17465341 - 17465406
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacatt 70  Q
    ||||||||||||||||||||||||||| ||  | ||||||| |||| |||||||||||| ||||||    
T  17465341 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgccaccattcaaaaccacatt 17465406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 17587873 - 17587808
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacatt 70  Q
    ||||||||||||||||||||||||||| ||  | ||||||| |||| |||||||||||| ||||||    
T  17587873 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgccaccattcaaaaccacatt 17587808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 41880943 - 41880878
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacatt 70  Q
    ||||||||||||||||||||||||||| ||  | ||||||| |||| |||||||||||| ||||||    
T  41880943 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgccaccattcaaaaccacatt 41880878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 48403810 - 48403745
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacatt 70  Q
    ||||||||||||||||||||||||||| ||  | ||||||| |||| |||||||||||| ||||||    
T  48403810 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgccaccattcaaaaccacatt 48403745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 35610036 - 35610101
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacatt 70  Q
    ||||||||||||||||||||||||||| ||  | ||||||| |||| ||||| |||||| ||||||    
T  35610036 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgccaccaatcaaaaccacatt 35610101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 556266 - 556345
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctacttaaacatca 84  Q
    |||||||| |||||||||||||||||| ||  | | |||| ||||| |||||||||||| |||||| ||||  |||||||    
T  556266 cactttgtatgcaaagtatcaaacatactcaaaatatgttcatttgccaccattcaaaaccacattatactctaacatca 556345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 179
Target Start/End: Original strand, 556390 - 556441
Alignment:
Q  128 gcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||||||||||||  ||||||| |||||||||| |||||||||| |||||||    
T  556390 gcaatcatcaaaaattcaattcctacataaaccttaaccacatgaaaactac 556441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 181
Target Start/End: Original strand, 5541286 - 5541336
Alignment:
Q  130 aatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    |||||||||||| ||||||| ||||| ||||||||||||||| |||||||||    
T  5541286 aatcatcaaaat-tcaattcctacatcaaccctaaccacatgaaaactacca 5541336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 181
Target Start/End: Original strand, 9371145 - 9371183
Alignment:
Q  143 tcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    ||||||||||||| ||||||||||||||| |||||||||    
T  9371145 tcaattcatacattaaccctaaccacatgaaaactacca 9371183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 181
Target Start/End: Original strand, 35610175 - 35610213
Alignment:
Q  143 tcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    ||||||||||||| ||||||||||||||| |||||||||    
T  35610175 tcaattcatacattaaccctaaccacatgaaaactacca 35610213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 16675102 - 16675049
Alignment:
Q  128 gcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    |||||||||||||   |||||| ||||| ||||||||||||||| |||||||||    
T  16675102 gcaatcatcaaaagtccaattcctacatcaaccctaaccacatgaaaactacca 16675049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 17649470 - 17649417
Alignment:
Q  128 gcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    |||||||||||||   |||||| ||||| ||||||||||||||| |||||||||    
T  17649470 gcaatcatcaaaagtccaattcctacatcaaccctaaccacatgaaaactacca 17649417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 41734492 - 41734439
Alignment:
Q  128 gcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    |||||||||||| | |||||||  |||| |||||||||||| ||||||||||||    
T  41734492 gcaatcatcaaattttcaattccaacatcaaccctaaccacgtgcaaactacca 41734439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 5 - 175
Target Start/End: Original strand, 17514316 - 17514497
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctactta-----------aacatcaattacagca 93  Q
    |||||||||||||||| |||||||||||||  |||||||| ||||| |||||||||||| |||||| ||||||           ||||||||||||| ||    
T  17514316 cactttgtgtgcaaagaatcaaacatattcaaattgtgttcatttggcaccattcaaaaccacattatacttatacatcatttaaacatcaattacaaca 17514415  T
Q  94 attacattcatttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaa 175  Q
    | || ||||||||| | |||||||||||||||||| |||| |||||||||||||||||  ||||||||||||||||||||||    
T  17514416 actatattcatttatcaattcataaactacacacgtaatcttcaaaatgtcaattcatttataaaccctaaccacatgcaaa 17514497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 52802584 - 52802409
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||| ||||||  ||||||||| |||| ||||||||||||||||||| | ||||||||| ||    || ||| ||||||||    
T  52802584 cactttgtgtgcaaagtataaaagatattcaaattgtgttattttgccaccattcaaaatcacattatgacttaaacaacataagcaacaactacattca 52802485  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||| ||||||||||| |||||||||||| ||||||||   | || |||||||||||||||||||||||    
T  52802484 tttatcaattcttaaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 52802409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 23275723 - 23275899
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacacc-attcaaaatcacattct-acttaaacatcaattacagcaattacattc 102  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||| ||||||| ||||||| | | ||||||| ||    || ||| |||||||    
T  23275723 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgtcacccattcaaagtcacattatgatttaaacaacataggcaacaactacattc 23275822  T
Q  103 atttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    ||||| | |||||||||||||||| |||||||||||| |||||||| | | || |||||||||||||||||||||||    
T  23275823 atttatcaattcataaactacacatgcaatcatcaaattgtcaatttaaaaatcaaccctaaccacatgcaaactac 23275899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 35258493 - 35258668
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | ||||||| ||    || ||| || |||||    
T  35258493 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaacaacataggcaacaactaaattca 35258592  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||||||||||||||| |||||||||||| ||||||||   | || |||||||||||||||||||||||    
T  35258593 tttatcaattcataaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 35258668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 49857563 - 49857738
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||||| | ||||||| ||    || ||| ||||||||    
T  49857563 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattctcatttaaacaacataggcaacaactacattca 49857662  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |  ||||||||||||| ||||| || ||| | |||||||||  ||||| ||||||||||||||||||||    
T  49857663 tttatcaaaacataaactacacatgcaatgataaaattatcaattcatttataaaacctaaccacatgcaaactac 49857738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 51321167 - 51320992
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||| ||| ||||||||||  |||||||| ||||| ||| ||||||| ||||||| | | |||||||  |    || ||| ||||||||    
T  51321167 cactttgtgtgcaaaatataaaacatattcaaattgtgttcatttgccactattcaaagtcacattatgatttaaacaatataggcaacaactacattca 51321068  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||||||||||||||| |||||||||||| ||||||||   | || |||||||||||||||||||||||    
T  51321067 tttatcaattcataaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 51320992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 45825330 - 45825154
Alignment:
Q  5 cactttgtgtgcaaa-gtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattc 102  Q
    ||||||||||||||| |||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | || |||| ||    || ||| |||||||    
T  45825330 cactttgtgtgcaaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgattttaacaacataggcaacaactacattc 45825231  T
Q  103 atttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    ||||| | |||||||||||||||| |||||||||||| ||||||||   | || |||||||||||||||||||||||    
T  45825230 atttatcaattcataaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 45825154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 19925195 - 19925020
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctactt-aaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| || || ||||  ||    || ||  ||||||||    
T  19925195 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattataatttaaactacataggcaacatctacattca 19925096  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | || ||||||||||||| ||||| || ||| |||||||||||  ||||| ||||||||||||||||||||    
T  19925095 tttatcaatacataaactacacatgcaatgatgaaattgtcaattcatttataaaacctaaccacatgcaaactac 19925020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 191
Target Start/End: Complemental strand, 25147755 - 25147559
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctacttaaacatcaatt-----------acagca 93  Q
    ||||||| ||||||||||| |||| ||||  ||||||||||||| ||||||||||||||| ||||| ||||||||||||| ||           ||| ||    
T  25147755 cactttgagtgcaaagtatgaaacttattggcattgtgttaattggacaccattcaaaattacattgtacttaaacatcatttaaacaacattcacatca 25147656  T
Q  94 attacattcatttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactaccaaaatttacaa 191  Q
    | ||||||||| ||     |||||||||||||| |||||||||||| | ||||||| ||||| ||| ||||||| |||||||||||||||||| ||||    
T  25147655 actacattcatctataacatcataaactacacatgcaatcatcaaagt-tcaattcctacatcaacactaaccagatgcaaactaccaaaattaacaa 25147559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 30890514 - 30890339
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctactt-aaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| || || ||||  ||    || ||  ||||||||    
T  30890514 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattataatttaaactacataggcaacatctacattca 30890415  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | || ||||||||||||| ||||| || ||| |||||||||||  ||||| ||||||||||||||||||||    
T  30890414 tttatcaatacataaactacacatgcaatgatgaaattgtcaattcatttataaaacctaaccacatgcaaactac 30890339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 47502768 - 47502593
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | ||||||| ||    || ||| ||||||||    
T  47502768 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaacaacataggcaacaactacattca 47502669  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||| |||| |||||| |||||||||||| ||||||||   | || ||| |||||||||||||||||||    
T  47502668 tttatcaattcctaaattacacatgcaatcatcaaattgtcaattttaaaatcaactctaaccacatgcaaactac 47502593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 96 - 179
Target Start/End: Complemental strand, 11196241 - 11196158
Alignment:
Q  96 tacattcatttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||||| ||||| | |||||||||||||||| |||||||||||||||||||||   | || |||||||||||||||||||||||    
T  11196241 tacattaatttatcaattcataaactacacatgcaatcatcaaaatgtcaattttaaaatcaaccctaaccacatgcaaactac 11196158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 19527163 - 19527338
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    |||||||||||||||  || ||||||||||  |||||||  ||||| |||||||||||  |||||| | | ||||||| ||    || ||| ||||||||    
T  19527163 cactttgtgtgcaaaacataaaacatattcaaattgtgtccatttgccaccattcaaagccacattatgatttaaacaacataggcaacaactacattca 19527262  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | ||||||||| |||||| |||||||||||| ||||||||   | || |||| ||||||||||||||||||    
T  19527263 tttatcaattcataaaatacacatgcaatcatcaaattgtcaattttaaaatcaaccataaccacatgcaaactac 19527338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 23935585 - 23935664
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctacttaaacatca 84  Q
    ||||||| ||||||||||| |||| ||||  |||||||||||||||||||||||||||| |||||| |||||||| ||||    
T  23935585 cactttgagtgcaaagtatgaaacttattaccattgtgttaatttgacaccattcaaaaccacattgtacttaaaaatca 23935664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 31783348 - 31783523
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | ||||| | ||    || ||| |||||| |    
T  31783348 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaagaacataggcaacaactacattta 31783447  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||| |||||||||||  ||||||||||| ||||||||   | || |||||||||||||| ||||||||    
T  31783448 tttatcaattcctaaactacacatacaatcatcaaattgtcaattttaaaatcaaccctaaccacatacaaactac 31783523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 47656323 - 47656244
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctacttaaacatca 84  Q
    ||||||||||||||||||||||||||| ||  | ||||||  |||| ||||||||||||||||||| ||||  |||||||    
T  47656323 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttcttttgccaccattcaaaatcacattatactctaacatca 47656244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 179
Target Start/End: Complemental strand, 11183542 - 11183459
Alignment:
Q  96 tacattcatttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||||| ||||| | |||||||||||||||| | |||||||||| ||||||||   | || ||| |||||||||||||||||||    
T  11183542 tacattaatttatcaattcataaactacacatgtaatcatcaaattgtcaattttaaaatcaactctaaccacatgcaaactac 11183459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 2365689 - 2365624
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacatt 70  Q
    ||||||||||||||||||||||||||| ||  | ||||||  |||| |||||||||||| ||||||    
T  2365689 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttcttttgccaccattcaaaaccacatt 2365624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 3732001 - 3732066
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacatt 70  Q
    ||||||||||||||||||||||||||| ||  | ||||||| |||| ||||| |||||| ||||||    
T  3732001 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgccaccaatcaaaaccacatt 3732066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 8474238 - 8474173
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacatt 70  Q
    ||||||||||||||||||||||||||| ||  | ||||||| |||| ||||| |||||| ||||||    
T  8474238 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgccaccaatcaaaaccacatt 8474173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 13639643 - 13639708
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacatt 70  Q
    ||||||||||||||||||||||||||| ||  | ||||||| |||| ||| |||||||| ||||||    
T  13639643 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgccacaattcaaaaccacatt 13639708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 19156468 - 19156403
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacatt 70  Q
    ||||||||||||||||||||||||||| ||  | ||||||  |||| |||||||||||| ||||||    
T  19156468 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttcttttgccaccattcaaaaccacatt 19156403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 21141356 - 21141303
Alignment:
Q  128 gcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    |||||||||||||  ||||||| ||||| ||||||||||||||| |||||||||    
T  21141356 gcaatcatcaaaaattcaattcctacatcaaccctaaccacatgaaaactacca 21141303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 26876110 - 26876045
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacatt 70  Q
    ||||||||||||||||||||||||||| ||  | ||||||| |||| ||||| |||||| ||||||    
T  26876110 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgccaccaatcaaaaccacatt 26876045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 50343713 - 50343766
Alignment:
Q  128 gcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    |||||||||||||  ||||||| ||||| ||||||||||||||| |||||||||    
T  50343713 gcaatcatcaaaaattcaattcctacatcaaccctaaccacatgaaaactacca 50343766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 21141480 - 21141401
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctacttaaacatca 84  Q
    ||||||||||||||||||||||||||| ||  | |||| |  |||| |||||||||||| |||||| ||||  |||||||    
T  21141480 cactttgtgtgcaaagtatcaaacatactcaaaatgtgatcttttgccaccattcaaaaccacattatactctaacatca 21141401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 50343589 - 50343668
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctacttaaacatca 84  Q
    ||||||||||||||||||||||||||| ||  | ||||||  |||| |||||||||||| || ||| ||||  |||||||    
T  50343589 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttcttttgccaccattcaaaaccatattatactctaacatca 50343668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 181
Target Start/End: Original strand, 3732140 - 3732178
Alignment:
Q  143 tcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    ||||||||||||| ||||||||||||||| |||||||||    
T  3732140 tcaattcatacattaaccctaaccacatgaaaactacca 3732178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 181
Target Start/End: Complemental strand, 8474099 - 8474061
Alignment:
Q  143 tcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    ||||||||||||| ||||||||||||||| |||||||||    
T  8474099 tcaattcatacattaaccctaaccacatgaaaactacca 8474061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 97692 - 97745
Alignment:
Q  128 gcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    |||||||||||||  ||||||| ||||| |||||||| |||||| |||||||||    
T  97692 gcaatcatcaaaaattcaattcctacatcaaccctaaacacatgaaaactacca 97745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 26875982 - 26875933
Alignment:
Q  132 tcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    |||| |||| |||||||| ||||| ||||||||||||||| |||||||||    
T  26875982 tcataaaaaagtcaattcctacatcaaccctaaccacatgaaaactacca 26875933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 38127227 - 38127280
Alignment:
Q  128 gcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    |||||||||||| | |||||||  |||| |||||||||||| ||||||||||||    
T  38127227 gcaatcatcaaattttcaattccaacatcaaccctaaccacgtgcaaactacca 38127280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 2424988 - 2425065
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctacttaaacatca 84  Q
    ||||||||||||||||||| ||||  ||||  |||||||| ||||| | |||||| ||| |||||| |||||||| ||||    
T  2424988 cactttgtgtgcaaagtataaaac--attcaaattgtgtttatttggctccattccaaaccacattatacttaaaaatca 2425065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 8701844 - 8702019
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | ||||||| ||  | || | | ||||||||    
T  8701844 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaacaacatatgcaactactacattca 8701943  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||||||||||||||| |||||||||||| |||||||||||  ||||| ||||||||||||||||||||    
T  8701944 tttatcaattcataaactacacatgcaatcatcaaattgtcaattcatttataaaacctaaccacatgcaaactac 8702019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 512392 - 512567
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||| ||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | ||||||| ||   ||| ||| ||||||||    
T  512392 cactttgggtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaacaacatagacaacaactacattca 512491  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||||||||||||||| |||||||||||| ||||||||   | || |||||||||||||||||||||||    
T  512492 tttatcaattcataaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 512567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 38968551 - 38968375
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaa-tcacattct-acttaaacatcaattacagcaattacattc 102  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| ||||||||| || ||||||| | | || |||| ||    || ||| |||||||    
T  38968551 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcataagtcacattatgattttaacaacataggcaacaactacattc 38968452  T
Q  103 atttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    ||||| | |||||||||||||||| |||||||||||| ||||||||   | ||||||||||||||||||||||||||    
T  38968451 atttatcaattcataaactacacatgcaatcatcaaattgtcaattttaaaataaaccctaaccacatgcaaactac 38968375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 19228292 - 19228467
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  ||| |||| ||||| |||||||||||  |||||| | | ||||||| ||    || ||| ||||||||    
T  19228292 cactttgtgtgcaaagtataaaacatattcaaattatgttcatttgccaccattcaaagccacattatgatttaaacaacataggcaacaactacattca 19228391  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||||||||||||||| |||||||||||| ||||||||   | || |||||||||||||||||||||||    
T  19228392 tttatcaattcataaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 19228467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 7757777 - 7757602
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctactt-aaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| |||||| |||  |||||||| ||||| |||||||||||| |||||| || || ||||| ||    || ||| ||||||||    
T  7757777 cactttgtgtgcaaagtataaaacatgttcaaattgtgttcatttgccaccattcaaaaccacattataatttaaacaacataggcaacaactacattca 7757678  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||| ||||||||||| |||||||||||| ||||||||   | || |||||||||||||| ||||||||    
T  7757677 tttatcaattcctaaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatacaaactac 7757602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 20422402 - 20422217
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctacttaaacatcaatta-----------cagca 93  Q
    ||||||||||| ||||||||||||||||||  | |||||| ||||| ||||||| ||||  ||||| ||||  ||||||| |||           || ||    
T  20422402 cactttgtgtgaaaagtatcaaacatattcaaaatgtgttcatttggcaccatttaaaactacattatactagaacatcatttaaataacatagacaaca 20422303  T
Q  94 attacattcatttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    | |||||||||||| | ||||||| ||||||||  ||||||||||| ||||||||| ||||| |||||||||||||||||||||||    
T  20422302 actacattcatttatcaattcatacactacacatccaatcatcaaattgtcaattcctacatcaaccctaaccacatgcaaactac 20422217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 28241419 - 28241594
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctactt-aaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| || || ||||  ||    || ||  ||||||||    
T  28241419 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattataatttaaactacataggcaacatctacattca 28241518  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | || ||||||||||||| ||||| || ||| |||||||||||  ||||| ||||||||||||||||||||    
T  28241519 tttatcaatacataaactacacatgcaatgatgaaattgtcaattcatttataaaacctaaccacatgcaaactac 28241594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 42537602 - 42537427
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  ||| |||| ||||| |||||||||||  |||||| | | || |||| ||    || ||| ||||||||    
T  42537602 cactttgtgtgcaaagtataaaacatattcaaattatgttcatttgccaccattcaaagccacattatgattttaacaacataggcaacaactacattca 42537503  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||||||||||||||| |||||||||||| ||||||||   | || ||||||||| |||||||||||||    
T  42537502 tttatcaattcataaactacacatgcaatcatcaaattgtcaattttaaaattaaccctaacaacatgcaaactac 42537427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 40624534 - 40624718
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctacttaaacatcaatta-----------cagca 93  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||| |||||| |  |||||||||| |||           || ||    
T  40624534 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgtcaccattcaaaaccacattatcattaaacatcatttaaacagcataggcaaca 40624633  T
Q  94 attacattcatttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    | |||||||||||| | ||||||||| |||||| |||||||||||| ||||||||   | || |||||||| ||||||||||||||    
T  40624634 actacattcatttatcaattcataaaatacacatgcaatcatcaaattgtcaattttaaaattaaccctaa-cacatgcaaactac 40624718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 42942106 - 42942281
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  ||| |||| ||||| ||| |||||||  || ||| | | ||||||| ||    || ||| ||||||||    
T  42942106 cactttgtgtgcaaagtataaaacatattcaaattatgttcatttgccacaattcaaagccatattatgatttaaacagcataggcaacaactacattca 42942205  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||| ||||||||||| |||||||||||| ||||||||   | || |||||||||||||||||||||||    
T  42942206 tttatcaattcctaaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 42942281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 14309 - 14484
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | ||||||| ||    || ||| |||||| |    
T  14309 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaacaacataggcaacaactacattta 14408  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||| |||||||| || |||||||||||| | ||||||   | || |||||||||||||| ||||||||    
T  14409 tttatcaattcctaaactacgcatgcaatcatcaaattttcaattttgaaatcaaccctaaccacatacaaactac 14484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 8580125 - 8580300
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||   ||||| | | ||||||| ||    || ||| ||||||||    
T  8580125 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagctacattatgatttaaacaacataggcaacaactacattca 8580224  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
     ||| | |||  ||||||||||| |||||||||||| ||||||||   | || |||||||||||||| ||||||||    
T  8580225 attatcaatttctaaactacacatgcaatcatcaaattgtcaattttgaaatcaaccctaaccacatacaaactac 8580300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 17658775 - 17658600
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    |||||||| |||||||||| ||||||||||  |||||||| ||||| |||||||||||| |||||| | | ||||||| ||    |  ||| ||||||||    
T  17658775 cactttgtatgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaaaccacattatgatttaaacaacataggccacaactacattca 17658676  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | ||  |||||||||||| ||||| || ||| |||||||||||  || || ||||||||||| ||||||||    
T  17658675 tttatcaataaataaactacacatgcaatgatgaaattgtcaattcatttatcaaacctaaccacatacaaactac 17658600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 19040737 - 19040794
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaa 62  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||    
T  19040737 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaa 19040794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 5197426 - 5197347
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctacttaaacatca 84  Q
    ||||||||||||||||||||||||||| ||  | ||||||  |||| |||||||||||| |||||| ||||  |||||||    
T  5197426 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttcttttgccaccattcaaaaccacattatactctaacatca 5197347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 5197302 - 5197249
Alignment:
Q  128 gcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    |||||||| ||||  ||||||||||||| ||||||||||||||| |||||||||    
T  5197302 gcaatcataaaaaattcaattcatacatcaaccctaaccacatgaaaactacca 5197249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 28877096 - 28877039
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaa 62  Q
    ||||| ||||||||||||| ||||||||||  |||||||| ||||| |||||||||||    
T  28877096 cacttggtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaa 28877039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 27673273 - 27673338
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacatt 70  Q
    ||||||||||||||| ||||||||||| ||  | ||||||  |||| |||||||||||| ||||||    
T  27673273 cactttgtgtgcaaaatatcaaacatactcaaaatgtgttcttttgccaccattcaaaaccacatt 27673338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 191
Target Start/End: Complemental strand, 31367492 - 31367295
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctacttaaacatca-----------attacagca 93  Q
    |||||| |||||||| ||| |||| || | ||||| |||| |||||||||||||||||| ||||||||||||||||||||           |||||| ||    
T  31367492 cactttttgtgcaaaatatgaaacttaatatcattatgttgatttgacaccattcaaaaccacattctacttaaacatcatttaaacatcaattacaaca 31367393  T
Q  94 attacattcatttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactaccaaaatttacaa 191  Q
    | || |||||||||   |||||||||||| | | |||||||||||||| ||||||| ||||| |||||||||||||||||||||| ||||||| ||||    
T  31367392 aataaattcatttataaattcataaactatatatgcaatcatcaaaatatcaattcctacatcaaccctaaccacatgcaaactagcaaaattaacaa 31367295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 96 - 191
Target Start/End: Original strand, 35464316 - 35464411
Alignment:
Q  96 tacattcatttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactaccaaaatttacaa 191  Q
    ||||||||||||   |||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||  |||||| ||||    
T  35464316 tacattcatttataaattcataaactacacatgcaatcatcagaatgtcaattcatacataaatcctaaccacatgcaaactattaaaattaacaa 35464411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 25965273 - 25965098
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| || ||||||||  |||||| | | ||||||| ||     | ||| ||||||||    
T  25965273 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaacattcaaagccacattatgatttaaacaacataggaaacaactacattca 25965174  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||| ||||||||||| |||||||||||| ||||||||   | || |||||||||||||||||||||||    
T  25965173 tttatcaattcctaaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 25965098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 28469094 - 28468919
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | ||||||| ||    || ||||||||||||    
T  28469094 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaacaacataggcaacaattacattca 28468995  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
     ||| | |||  ||||||||||| |||||||||||| ||||||||   | || |||||||||||||| ||||||||    
T  28468994 attatcaatttctaaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatacaaactac 28468919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 179
Target Start/End: Complemental strand, 7185481 - 7185307
Alignment:
Q  6 actttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattcat 104  Q
    |||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | ||||||| ||    || ||| |||||||||    
T  7185481 actttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaacaacataggcaacaactacattcat 7185382  T
Q  105 ttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    ||| | |||| ||||| ||||| |||||||||||| ||||||||   | || |||||||||||||| ||||||||    
T  7185381 ttatcaattcctaaacaacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatacaaactac 7185307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 21998643 - 21998468
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | ||||||| ||   ||| ||| || |||||    
T  21998643 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaacaacatagacaacaaataaattca 21998544  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
     ||| | |||  ||||||||||| |||||||||||| ||||||||   | || |||||||||||||| ||||||||    
T  21998543 attatcaattactaaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatacaaactac 21998468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 32955974 - 32956149
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctactt-aaacatcaattacagcaattacattca 103  Q
    ||||||| ||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| || || ||||| ||    || ||| ||||||||    
T  32955974 cactttgcgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattataatttaaacaacataggcaacaagtacattca 32956073  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||| ||||||||||| |||||||||||| ||||||||   | || ||||| |||||||| ||||||||    
T  32956074 tttatcaattcctaaactacacatgcaatcatcaaattgtcaattttaaaatcaacccaaaccacatacaaactac 32956149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 39948053 - 39947878
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  ||||||||  |||| |||||||||||  |||||| | | ||||||| ||    || ||| ||||||||    
T  39948053 cactttgtgtgcaaagtataaaacatattcaaattgtgttcttttgccaccattcaaagccacattatgatttaaacaacataggcaacaactacattca 39947954  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||| ||||||||||| ||||||||| || ||||||||   | || |||||||||||||| ||||||||    
T  39947953 tttatcaattcctaaactacacatgcaatcatcgaattgtcaattttaaaatcaaccctaaccacatacaaactac 39947878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 45429044 - 45428869
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | ||||||  |     || ||| ||||||||    
T  45429044 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaactacgtaggcaacaactacattca 45428945  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
     ||| | |||  ||||||||||| |||||||||||| ||||| ||  || || |||||||||||||| ||||||||    
T  45428944 attatcaatttctaaactacacatgcaatcatcaaattgtcattttttaaatcaaccctaaccacatacaaactac 45428869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 179
Target Start/End: Complemental strand, 17421013 - 17420845
Alignment:
Q  12 tgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattcatttaccg 110  Q
    |||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | ||||||| ||    || ||| |||||||| | | |     
T  17421013 tgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaacccacattatgatttaaacaacataggcaacaactacattcaatgatca 17420914  T
Q  111 attcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||  ||||||||||| |||||||||||| | ||||||   | || |||||||||||||||||||||||    
T  17420913 atttctaaactacacatgcaatcatcaaattctcaattttgaaatcaaccctaaccacatgcaaactac 17420845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 179
Target Start/End: Original strand, 25515553 - 25515604
Alignment:
Q  128 gcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||||||||||||| ||||||| ||||| |||||||||||||||||||||||    
T  25515553 gcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactac 25515604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 96 - 179
Target Start/End: Original strand, 45137144 - 45137227
Alignment:
Q  96 tacattcatttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||||||||||| | |||| ||||||||||| |||||||||||| ||||||||   | || |||| ||||||||||||||||||    
T  45137144 tacattcatttatcaattcctaaactacacatgcaatcatcaaattgtcaattttaaaatcaaccttaaccacatgcaaactac 45137227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 15831580 - 15831516
Alignment:
Q  6 actttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacatt 70  Q
    |||||||||||||||||||||||||| ||  | ||||||| |||| |||||||||||| ||||||    
T  15831580 actttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgccaccattcaaaaccacatt 15831516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 20938349 - 20938270
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctacttaaacatca 84  Q
    ||||||||||||||||||||||||||| ||  | ||||||  |||| |||||||||||| |||||| ||||  |||||||    
T  20938349 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttcttttgccaccattcaaaaccacattatactctaacatca 20938270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 29401224 - 29401303
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctacttaaacatca 84  Q
    ||||||||||||||||||||||||||| ||  | ||||||  |||| |||||||||||| |||||| ||||  |||||||    
T  29401224 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttcttttgccaccattcaaaaccacattatactctaacatca 29401303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 3940349 - 3940414
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacatt 70  Q
    ||||||||||||||||||||||||||| ||  | ||||||| |||| ||||| |||||| ||||||    
T  3940349 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgccaccaatcaaaaccacatt 3940414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 3940477 - 3940526
Alignment:
Q  132 tcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    |||||||||  ||||||||||||| ||||||||||||||| |||||||||    
T  3940477 tcatcaaaaattcaattcatacattaaccctaaccacatgaaaactacca 3940526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 5352418 - 5352353
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacatt 70  Q
    ||||||||||||||||||||||||||| ||  | ||||||| |||| ||||| |||||| ||||||    
T  5352418 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgccaccaatcaaaaccacatt 5352353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 30496567 - 30496632
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacatt 70  Q
    ||||||||||||||||||||||||||| ||  | ||||||| |||| ||||| |||||| ||||||    
T  30496567 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgccaccaatcaaaaccacatt 30496632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 43978845 - 43978796
Alignment:
Q  132 tcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    |||||||||  ||||||||||||| ||||||||||||||| |||||||||    
T  43978845 tcatcaaaaattcaattcatacattaaccctaaccacatgaaaactacca 43978796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 43978973 - 43978908
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacatt 70  Q
    ||||||||||||||||||||||||||| ||  | ||||||| |||| ||||| |||||| ||||||    
T  43978973 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgccaccaatcaaaaccacatt 43978908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 45284501 - 45284448
Alignment:
Q  128 gcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    |||||||||||||  ||||||| ||||| ||||||||||||||| |||||||||    
T  45284501 gcaatcatcaaaaattcaattcctacatcaaccctaaccacatgaaaactacca 45284448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 45291864 - 45291811
Alignment:
Q  128 gcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    |||||||||||||  ||||||| ||||| ||||||||||||||| |||||||||    
T  45291864 gcaatcatcaaaaattcaattcctacatcaaccctaaccacatgaaaactacca 45291811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 36655970 - 36656049
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctacttaaacatca 84  Q
    ||||||||||||||||||||||||||| ||  | ||||||  |||| ||||||| |||| |||||| ||||  |||||||    
T  36655970 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttcttttgccaccattgaaaaccacattatactctaacatca 36656049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 45284625 - 45284546
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctacttaaacatca 84  Q
    ||||||||||||||||||||||||||| |   | ||||||  |||| |||||||||||| |||||| ||||  |||||||    
T  45284625 cactttgtgtgcaaagtatcaaacatacttaaaatgtgttcttttgccaccattcaaaaccacattatactctaacatca 45284546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 45291988 - 45291909
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctacttaaacatca 84  Q
    ||||||||||||||||||||||||||| |   | ||||||  |||| |||||||||||| |||||| ||||  |||||||    
T  45291988 cactttgtgtgcaaagtatcaaacatacttaaaatgtgttcttttgccaccattcaaaaccacattatactctaacatca 45291909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 181
Target Start/End: Complemental strand, 5352279 - 5352241
Alignment:
Q  143 tcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    ||||||||||||| ||||||||||||||| |||||||||    
T  5352279 tcaattcatacattaaccctaaccacatgaaaactacca 5352241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 181
Target Start/End: Original strand, 30496706 - 30496744
Alignment:
Q  143 tcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    ||||||||||||| ||||||||||||||| |||||||||    
T  30496706 tcaattcatacattaaccctaaccacatgaaaactacca 30496744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 181
Target Start/End: Original strand, 43539497 - 43539535
Alignment:
Q  143 tcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    ||||||||||||| ||||||||||||||| |||||||||    
T  43539497 tcaattcatacattaaccctaaccacatgaaaactacca 43539535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 36656094 - 36656146
Alignment:
Q  128 gcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactacc 180  Q
    ||||||||||||   ||||||| ||||| ||||||||||||||| ||||||||    
T  36656094 gcaatcatcaaatattcaattcctacatcaaccctaaccacatgaaaactacc 36656146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 35 - 177
Target Start/End: Original strand, 29821674 - 29821821
Alignment:
Q  35 tcattgtgttaatttgacaccattcaaaatcacattctac-----ttaaacatcaattacagcaattacattcatttaccgattcataaactacacacgc 129  Q
    ||||||| ||||||||||||||||||||||||||||||||     ||||||||||||||||| || |||||||||||    ||||||||| ||||||  |    
T  29821674 tcattgttttaatttgacaccattcaaaatcacattctacttaatttaaacatcaattacagtaactacattcatttctaaattcataaattacacatac 29821773  T
Q  130 aatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaact 177  Q
    | | |||||||||||||||| || || |||||||||||||| ||||||    
T  29821774 atttatcaaaatgtcaattcctagatcaaccctaaccacatacaaact 29821821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 77 - 191
Target Start/End: Original strand, 30424127 - 30424241
Alignment:
Q  77 aaacatcaattacagcaattacattcatttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaac 176  Q
    |||||||||||| |  || |||||||||||| | |||| ||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  30424127 aaacatcaattataataactacattcatttatcaattcctaaactatacatgcaatcatcaaaatgtcaattcatacataaactctaaccacatgcacac 30424226  T
Q  177 taccaaaatttacaa 191  Q
    || ||||||| ||||    
T  30424227 taacaaaattaacaa 30424241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 7 - 179
Target Start/End: Original strand, 6320185 - 6320358
Alignment:
Q  7 ctttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattcatt 105  Q
    ||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | || |||| ||    || ||| ||||||||||    
T  6320185 ctttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgattttaacaacataggcaacaactacattcatt 6320284  T
Q  106 taccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    || | |||||||||||||||| |||||||||||| ||||||||   | || |||||||||||||||||||||||    
T  6320285 tatcaattcataaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 6320358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 24088402 - 24088577
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    |||||||||| |||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | ||||||| ||   ||| ||| ||||||||    
T  24088402 cactttgtgtacaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatcatttaaacaacatagacaacaactacattca 24088501  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||||||||||||||| ||||| |||||| ||||||||   | || ||| |||||||||||||||||||    
T  24088502 tttatcaattcataaactacacatgcaattatcaaattgtcaattttaaaatcaacactaaccacatgcaaactac 24088577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 21601057 - 21600983
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctacttaaa 79  Q
    ||||||||||||||||||||||||||||||  |||||||| ||||| |||||||||||| |||||| ||||||||    
T  21601057 cactttgtgtgcaaagtatcaaacatattcaaattgtgttcatttgtcaccattcaaaaccacattatacttaaa 21600983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 24722381 - 24722302
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctacttaaacatca 84  Q
    ||||||||||||||||||||||||||| ||  | ||||||  ||||||||||||||||| |||||| ||||  |||||||    
T  24722381 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttcttttgacaccattcaaaaacacattatactctaacatca 24722302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 31769158 - 31768979
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  ||||||||  |||| |||||||||||| |||||| | | ||||||| ||    || ||| ||||||||    
T  31769158 cactttgtgtgcaaagtataaaacatattcaaattgtgttcttttgccaccattcaaaaccacattatgatttaaacaacataagcaacaactacattca 31769059  T
Q  104 tttaccgattcataaactaca----cacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||  | |||| ||||| |||    || |||||||||||| |||| |||   | || |||||||||||||||||||||||    
T  31769058 tttgtcaattcctaaaccacacatgcaagcaatcatcaaattgtcgattttaaaatcaaccctaaccacatgcaaactac 31768979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 14216650 - 14216597
Alignment:
Q  35 tcattgtgttaatttgacaccattcaaaatcacattctacttaaacatcaatta 88  Q
    |||| |||||||||| ||||||||||||| | ||||||||||||||||||||||    
T  14216650 tcatcgtgttaatttcacaccattcaaaacctcattctacttaaacatcaatta 14216597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 192
Target Start/End: Complemental strand, 14216561 - 14216481
Alignment:
Q  113 tcataaactacacacgcaatc-atcaaaatgtcaattcatacataaaccctaaccacatgcaaactaccaaaatttacaac 192  Q
    |||||||||||||| |||||| | |||||  |||||||||  || |||||||||||||||||||||| ||||||| |||||    
T  14216561 tcataaactacacatgcaatctaccaaaagttcaattcatgtatcaaccctaaccacatgcaaactatcaaaattcacaac 14216481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 6201601 - 6201536
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacatt 70  Q
    ||||||||||||||||||||||||||| ||  | ||||||| |||| ||||| |||||| ||||||    
T  6201601 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgccaccaatcaaaaccacatt 6201536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 11688568 - 11688503
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacatt 70  Q
    ||||||||||||||||||||||||||| ||  | ||||||| |||| ||||| |||||| ||||||    
T  11688568 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgccaccaatcaaaaccacatt 11688503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 22301633 - 22301568
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacatt 70  Q
    ||||||||||||||||||||||||||| ||  | ||||||| |||| ||| |||||||| ||||||    
T  22301633 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgccacaattcaaaaccacatt 22301568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 30829272 - 30829337
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacatt 70  Q
    ||||||||||||||||||||||||||| ||  | ||||||| |||| ||||| |||||| ||||||    
T  30829272 cactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgccaccaatcaaaaccacatt 30829337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 3381237 - 3381182
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattca 60  Q
    ||||||||||||||  ||| ||||||||||  |||||||| |||||||||||||||    
T  3381237 cactttgtgtgcaatatataaaacatattcaaattgtgttcatttgacaccattca 3381182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 3501622 - 3501543
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattctacttaaacatca 84  Q
    ||||||||||||||||||||||||||| ||  | |||| |  |||| |||||||||||| |||||| ||||  |||||||    
T  3501622 cactttgtgtgcaaagtatcaaacatactcaaaatgtgatcttttgccaccattcaaaaccacattatactctaacatca 3501543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 181
Target Start/End: Complemental strand, 6201462 - 6201424
Alignment:
Q  143 tcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    ||||||||||||| ||||||||||||||| |||||||||    
T  6201462 tcaattcatacattaaccctaaccacatgaaaactacca 6201424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 181
Target Start/End: Complemental strand, 11688429 - 11688391
Alignment:
Q  143 tcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    ||||||||||||| ||||||||||||||| |||||||||    
T  11688429 tcaattcatacattaaccctaaccacatgaaaactacca 11688391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 181
Target Start/End: Original strand, 30829411 - 30829449
Alignment:
Q  143 tcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    ||||||||||||| ||||||||||||||| |||||||||    
T  30829411 tcaattcatacattaaccctaaccacatgaaaactacca 30829449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 175
Target Start/End: Complemental strand, 3381116 - 3381055
Alignment:
Q  114 cataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaa 175  Q
    ||||||||||||| ||||| || ||| ||||||||||   ||||| ||||||||||||||||    
T  3381116 cataaactacacatgcaatgatgaaattgtcaattcacttataaaacctaaccacatgcaaa 3381055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 3501498 - 3501445
Alignment:
Q  128 gcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactacca 181  Q
    |||||||||||||  ||||||| ||||| |||||||| |||||| |||||||||    
T  3501498 gcaatcatcaaaaattcaattcctacatcaaccctaaacacatgaaaactacca 3501445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 179
Target Start/End: Complemental strand, 7870 - 7696
Alignment:
Q  6 actttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattcat 104  Q
    |||||||||||||||||| ||||||||||  |||||||| ||||| || ||||||||  |||||| | | ||||||| ||    || ||| |||||||||    
T  7870 actttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccatcattcaaagccacattatgatttaaacaacataggcaacaactacattcat 7771  T
Q  105 ttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    ||| | |||| ||||||||||| |||||||||||| ||||||||   | || |||||||||||||| ||||||||    
T  7770 ttatcaattcctaaactacacatgcaatcatcaaattgtcaattttgaaatcaaccctaaccacatacaaactac 7696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 15243 - 15418
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattca 103  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | ||||||| ||    ||  || ||||||||    
T  15243 cactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaacaacataggcaataactacattca 15342  T
Q  104 tttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||| | |||  ||||||||||| |||||||||||| ||||||||   | || |||||||||||||| ||||||||    
T  15343 tttatcaatttctaaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatacaaactac 15418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0293 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 179
Target Start/End: Original strand, 352 - 523
Alignment:
Q  9 ttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacattct-acttaaacatcaattacagcaattacattcattta 107  Q
    ||||||||||||||| ||||||||||  |||||||| ||||| |||||||||||  |||||| | | ||||||  ||    || ||| |||||||| |||    
T  352 ttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaactacataggcaacaactacattcaatta 451  T
Q  108 ccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
     | |||  ||||||||||| |||||||||||| ||||||||   | || |||||||||||||| ||||||||    
T  452 tcaatttctaaactacacatgcaatcatcaaattgtcaattttgaaatcaaccctaaccacatacaaactac 523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 96 - 179
Target Start/End: Complemental strand, 8564 - 8481
Alignment:
Q  96 tacattcatttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||||||||||| | |||||||||||| ||| |||||||||||| ||||||||   | || |||||||||||||||||||||||    
T  8564 tacattcatttatcaattcataaactatacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 8481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 96 - 179
Target Start/End: Original strand, 40747 - 40830
Alignment:
Q  96 tacattcatttaccgattcataaactacacacgcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    |||||||||||| | || ||||||||||||| ||||| || ||| |||||||||||  ||||| ||||||||||||||||||||    
T  40747 tacattcatttatcaatacataaactacacatgcaatgatgaaattgtcaattcatttataaaacctaaccacatgcaaactac 40830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0877 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0877
Description:

Target: scaffold0877; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 4398 - 4452
Alignment:
Q  128 gcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactaccaa 182  Q
    |||||||||||||| ||||||| ||||| |||||| |||||||||||||||||||    
T  4398 gcaatcatcaaaatttcaattcctacatcaacccttaccacatgcaaactaccaa 4452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 179
Target Start/End: Original strand, 18677 - 18728
Alignment:
Q  128 gcaatcatcaaaatgtcaattcatacataaaccctaaccacatgcaaactac 179  Q
    ||||| |||||||| ||||||| ||||| ||||||||||||||| |||||||    
T  18677 gcaataatcaaaatttcaattcctacatcaaccctaaccacatgaaaactac 18728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 18553 - 18618
Alignment:
Q  5 cactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacaccattcaaaatcacatt 70  Q
    ||||||| ||||||||||||||||||| ||  | ||||||  |||| |||||||||||| ||||||    
T  18553 cactttgcgtgcaaagtatcaaacatactcaaaatgtgttcttttgccaccattcaaaaccacatt 18618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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