View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4522-Insertion-1 (Length: 1125)
Name: NF4522-Insertion-1
Description: NF4522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4522-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 90; Significance: 6e-43; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 375 - 491
Target Start/End: Complemental strand, 20248790 - 20248673
Alignment:
| Q |
375 |
tgtcaaacaaatgatgt-aaccctgatgacagaacaattgctttaaatgaaaacttcaatgcatatgaagttatgggtataaaaaagaaggatggtgtat |
473 |
Q |
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| T |
20248790 |
tgtcaaacaaattatgttaactctgatgacagaacaattgctttgaatgaaaacttcaatgcatctgaagttatgggtataaaaaagaaggatggtgtat |
20248691 |
T |
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| Q |
474 |
ccagaagaaaaggtagac |
491 |
Q |
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| T |
20248690 |
ccagaggaaaaggtagac |
20248673 |
T |
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Target: chr2; HSP #2
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 866 - 946
Target Start/End: Complemental strand, 20248676 - 20248596
Alignment:
| Q |
866 |
agacaccattttcaacaagtcacattgattggaag-agacatttgggtgcaactaatctgcagcaacttttattttattttt |
946 |
Q |
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| T |
20248676 |
agacaccattttcaacaagtcacattgattggaagaagacatttgggtggaactaatctgcagcaactatt-ttttattttt |
20248596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 323 - 377
Target Start/End: Complemental strand, 23881429 - 23881375
Alignment:
| Q |
323 |
attagccacacatgttgaaatctcatatgttataaaagtttgtactctatgctgt |
377 |
Q |
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| T |
23881429 |
attagccacacatgttgaaatctcatctgttataaaagtttgtactctatgctgt |
23881375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 3e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 36645844 - 36645937
Alignment:
| Q |
7 |
aagttccacattggctagaatatggaacaagtgtgtgtttataaaggtctggcatgctggtatgttctccgagctgggtaatactagcttgtga |
100 |
Q |
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| T |
36645844 |
aagtcccacattggctagaatatggaacaagtatgtgtttataaaggtctggcatgctagtatgtttgccgagctgcgtaacaccagcttgtga |
36645937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 192
Target Start/End: Original strand, 36646299 - 36646371
Alignment:
| Q |
120 |
tttgctaaataagctgcctaaagctgccgttgttttaactgataatcaaaactgatcatgtccttgctaactt |
192 |
Q |
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| T |
36646299 |
tttgctaaataagctgcctaacactggtgttgttttaacagagaatcagaactgatcctgaccttgctaactt |
36646371 |
T |
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Target: chr3 (Bit Score: 57; Significance: 3e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 309 - 377
Target Start/End: Original strand, 52610618 - 52610686
Alignment:
| Q |
309 |
atgttgttattgacattagccacacatgttgaaatctcatatgttataaaagtttgtactctatgctgt |
377 |
Q |
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| T |
52610618 |
atgttgttattggcattagccacacatgttgaaatctcatctgttataaaagtttgcactctatgctgt |
52610686 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 372
Target Start/End: Original strand, 31330946 - 31331009
Alignment:
| Q |
309 |
atgttgttattgacattagccacacatgttgaaatctcatatgttataaaagtttgtactctat |
372 |
Q |
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| T |
31330946 |
atgttgttattggcattagccacatgtgttgaaattccatctgttataaaaatttgtaatctat |
31331009 |
T |
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