View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4522-Insertion-2 (Length: 1073)

Name: NF4522-Insertion-2
Description: NF4522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4522-Insertion-2
NF4522-Insertion-2
[»] chr7 (13 HSPs)
chr7 (40-773)||(19754061-19754798)
chr7 (39-781)||(19596535-19597281)
chr7 (778-1072)||(19753400-19753699)
chr7 (778-1072)||(19593576-19593878)
chr7 (871-932)||(15679629-15679690)
chr7 (554-625)||(16694030-16694101)
chr7 (554-625)||(17668266-17668337)
chr7 (7-42)||(19597453-19597488)
chr7 (896-938)||(12379716-12379758)
chr7 (871-933)||(15679708-15679769)
chr7 (711-769)||(16693923-16693981)
chr7 (711-769)||(17668159-17668217)
chr7 (877-927)||(12379763-12379813)
[»] chr2 (9 HSPs)
chr2 (785-1072)||(31119840-31120136)
chr2 (871-932)||(18582492-18582553)
chr2 (871-932)||(25472194-25472255)
chr2 (871-932)||(38697255-38697316)
chr2 (871-938)||(25472267-25472333)
chr2 (113-265)||(35283287-35283443)
chr2 (871-938)||(38697177-38697243)
chr2 (210-263)||(21188775-21188828)
chr2 (871-938)||(18582565-18582631)
[»] chr4 (7 HSPs)
chr4 (778-981)||(5384288-5384493)
chr4 (58-234)||(30219203-30219381)
chr4 (871-932)||(14033260-14033321)
chr4 (871-938)||(38052971-38053037)
chr4 (871-932)||(38053050-38053112)
chr4 (871-932)||(51315026-51315086)
chr4 (871-932)||(51315105-51315166)
[»] chr6 (5 HSPs)
chr6 (778-1070)||(18616474-18616767)
chr6 (871-932)||(9533857-9533918)
chr6 (871-932)||(31474700-31474761)
chr6 (871-938)||(9533931-9533997)
chr6 (871-938)||(31474773-31474839)
[»] chr5 (5 HSPs)
chr5 (64-264)||(36233748-36233950)
chr5 (872-932)||(6950805-6950865)
chr5 (871-932)||(41869867-41869928)
chr5 (871-938)||(41869789-41869855)
chr5 (871-938)||(6950727-6950793)
[»] chr3 (9 HSPs)
chr3 (64-124)||(39286540-39286600)
chr3 (871-932)||(1419742-1419803)
chr3 (871-932)||(30377367-30377428)
chr3 (871-938)||(1419815-1419881)
chr3 (871-938)||(30377289-30377355)
chr3 (896-938)||(36641113-36641155)
chr3 (878-932)||(36641175-36641229)
chr3 (214-263)||(36468620-36468669)
chr3 (91-187)||(27479471-27479565)
[»] scaffold0352 (1 HSPs)
scaffold0352 (104-187)||(8620-8702)
[»] chr1 (9 HSPs)
chr1 (871-932)||(9372116-9372177)
chr1 (871-932)||(9957054-9957115)
chr1 (871-932)||(32178722-32178783)
chr1 (871-932)||(1346647-1346708)
chr1 (871-938)||(32178796-32178862)
chr1 (896-938)||(1346723-1346765)
chr1 (896-938)||(9372191-9372233)
chr1 (105-187)||(29871787-29871869)
chr1 (871-938)||(9956975-9957041)


Alignment Details
Target: chr7 (Bit Score: 684; Significance: 0; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 684; E-Value: 0
Query Start/End: Original strand, 40 - 773
Target Start/End: Complemental strand, 19754798 - 19754061
Alignment:
Q  40 gtaatgatattctcttcaaaaggcaaagtttcaaatgctttggaagtggtagatcacataaagcgtctatcgtgatcttggttcatttgtggggaggggc 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19754798 gtaatgatattctcttcaaaaggcaaagtttcaaatgctttggaagtggtagatcacataaagcgtctatcgtgatcttggttcatttgtggggaggggc 19754699  T
Q  140 gtaataaaacttttgttttcttggattggtggttgaaccaaattg----tattcaaagcatataatttcctgacttctttgtaatgggcttcgagtaccc 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19754698 gtaataaaacttttgttttcttggattggtggttgaaccaaattgcatgtattcaaagcatataatttcctgacttctttgtaatgggctttgagtaccc 19754599  T
Q  236 catgtacacgttttaataaaatcttgcttaagcttacaattcgttaaaagaatgatacagaaaacaattctaaaagaacctaatcggtctgtttttaaaa 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  19754598 catgtacacgttttaataaaatcttgcttaagcttacaattcgttaaaagaatgatacagaaaacaattctaaaagaacctaatcagtctgtttttaaaa 19754499  T
Q  336 gctacttgagatatcagtctaaattttaaacacattgtcctaatttctttttcatgnnnnnnntattgagcataactcagcctttcttgttacatgctcc 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  19754498 gctacttgagatatcagtctaaattttaaacacattgtcctaatttctttttcatgaaaaatatattgagcataactcagcctttcttgttacatgctcc 19754399  T
Q  436 caaaaatgaagcttgattttcaaaaataatgtgtcaaaacttctttccattgtggattttggatatggaaagagaacaattgtaatttatcaaagagttc 535  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19754398 caaaaatgaagcttgatttttaaaaataatgtgtcaaaacttctttccattgtggattttggatatggaaagagaacaattgtaatttatcaaagagttc 19754299  T
Q  536 ttaatcttctagtctaagaaccaatatactgtacattgtgaaatataattgcctagtaaatacatacaagtataaagaaaaccatcaagtaagaggactg 635  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19754298 ttaatcttctagtctaagaaccaatatactgtacattgtgaaatataattgcctagtaaatacatacaagtataaagaaaaccatcaagtaagaggactg 19754199  T
Q  636 atatatattctgagagcatgatgtgtagtattaacttttatccacagtcctagtaaaagttttgaattttaatattcactaaatcatgtattgacaaatt 735  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  19754198 atatatattctgagagcatgatgtgtagtattaacttttatccacagtcctagtaaaagttttgaattttaatactcactaaatcatgtattgacaaatt 19754099  T
Q  736 atgaaacaatggtttcctaagtaactgttgtcatagta 773  Q
    ||||||||||||||||||||||||||||||||||||||    
T  19754098 atgaaacaatggtttcctaagtaactgttgtcatagta 19754061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 673; E-Value: 0
Query Start/End: Original strand, 39 - 781
Target Start/End: Original strand, 19596535 - 19597281
Alignment:
Q  39 tgtaatgatattctcttcaaaaggcaaagtttcaaatgctttggaagtggtagatcacataaagcgtctatcgtgatcttggttcatttgtggggagggg 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19596535 tgtaatgatattctcttcaaaaggcaaagtttcaaatgctttggaagtggtagatcacattaagcgtctatcgtgatcttggttcatttgtggggagggg 19596634  T
Q  139 cgtaataaaacttttgttttcttggattggtggttgaaccaaattg----tattcaaagcatataatttcctgacttctttgtaatgggcttcgagtacc 234  Q
    ||||||||||||||||||||||||||||||| ||||||||  ||||    |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  19596635 cgtaataaaacttttgttttcttggattggttgttgaaccccattgcatgtattcaaagcatgtaatttcctgacttctttgtaatgggcttcgagtacc 19596734  T
Q  235 ccatgtacacgttttaataaaatcttgcttaagcttacaattcgttaaaagaatgatacagaaaacaattctaaaagaacctaatcggtctgtttttaaa 334  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  19596735 ccatgtacacgttttaataaaatcttgcttaagcttacaattcgttaaaagaatgatacagaaaacaattctaaaagaacctaatcagtctgtttttaaa 19596834  T
Q  335 agctacttgagatatcagtctaaattttaaacacattgtcctaatttctttttcatgnnnnnnntattgagcataactcagcctttcttgttacatgctc 434  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||    
T  19596835 agctacttgagatatcagtctaaattttaaacacattgtcctaatttctttttcataaaaaacatattgagcataactcagcctttcttgttacatgctc 19596934  T
Q  435 ccaaaaatgaagcttgattttcaaaaataatgtgtcaaaacttctttccattgtggattttggatatggaaagagaacaattgtaatttatcaaagagtt 534  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19596935 ccaaaaatgaagcttgattttaaaaaataatgtgtcaaaacttctttccattgtggattttggatatggaaagagaacaattgtaatttatcaaagagtt 19597034  T
Q  535 cttaatcttctagtctaagaaccaatatactgtacattgtgaaatataattgcctagtaaatacatacaagtataaagaaaaccatcaagtaagaggact 634  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19597035 cttaatcttctagtctaagaaccaatatactgtacattgtgaaatataattgcctagtaaatacatacaagtataaagaaaaccatcaagtaagaggact 19597134  T
Q  635 gatatatattctgagagcatgatgtgtagtattaacttttatccacagtcctagtaaaagttttgaattttaatattcactaaatcatgtattgacaaat 734  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  19597135 gatatatattctgagagcatgatgtgtagtattaacttttatccacagtcctagtaaaagttttgaattttaatactcactaaatcatgtattgacaaat 19597234  T
Q  735 tatgaaacaatggtttcctaagtaactgttgtcatagtaaaataatt 781  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  19597235 tatgaaacaatggtttcctaagtaactgttgtcatagtaaaataatt 19597281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 778 - 1072
Target Start/End: Complemental strand, 19753699 - 19753400
Alignment:
Q  778 aattgcaatttgtaagaaaatcattattgattctcaccattttcttaaatcattctctcttcaggtgaattgttttaggtttacgnnnnnnnncttatcc 877  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||    
T  19753699 aattgcaatatgtaagaaaatcattattgattctcaccattttcttaaatcattctctcttcaggtgaattgttttaggtttacgtttttttt-ttatcc 19753601  T
Q  878 caattatctttaataatgattgtttcaattctctaattgcttcaggtgttgaattccaattgaattggtttatgtattttccaattgaatcgattattta 977  Q
    ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  19753600 caattctttttaataatgattgtttcaattctctaattgcttcaggtgttgaattccaattgaattggtttatgtattttccaattgaattgattattta 19753501  T
Q  978 attcactaattctca-cattattaaattct-attg-attga-ttttgctttc-acaa-tgaagtatgtattgtacacacatgaataatattaatgaattg 1071  Q
    ||||||||||||||| |||||||||||||| |||| ||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  19753500 attcactaattctcaccattattaaattctaattgaattgatttttgctttcaacaattgaagtatgtattgtacacacatgaataatattaatgaattg 19753401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 778 - 1072
Target Start/End: Original strand, 19593576 - 19593878
Alignment:
Q  778 aattgcaatttgtaagaaaatcattattgattctcaccattttcttaaatcattctctcttcaggtgaattgttttaggtttacgnnnnnnnn--cttat 875  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||    
T  19593576 aattgcagtttgtaagaaaatcattattgattctcaccattttcttaaatcattctctcttcaggtgaattgttttaggtttacgttttttttttcttat 19593675  T
Q  876 cccaattatctttaataatgattgtttcaattctctaattgcttcaggtgttgaattccaattgaattggtttatgtattttccaattgaatcgattatt 975  Q
    ||||||| |||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  19593676 cccaattctctttaataatgatcgcttcaattctctaattgcttcaggtgttgaattacaattgaattggtttatgtattttccaattgaatcgattatt 19593775  T
Q  976 taattcactaattctca-cattattaaattct-attg-attga-ttttgctttc-acaa-tgaagtatgtattgtacacacatgaataatattaatgaat 1069  Q
    ||||||||||||||||| |||||||||||||| |||| ||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  19593776 taattcactaattctcaccattattaaattctaattgaattgatttttgctttcaacaattgaagtatgtattgtacacacatgaataatattaatgaat 19593875  T
Q  1070 tgt 1072  Q
    |||    
T  19593876 tgt 19593878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 871 - 932
Target Start/End: Complemental strand, 15679690 - 15679629
Alignment:
Q  871 cttatcccaattatctttaataatgattgtttcaattctctaattgcttcaggtgttgaatt 932  Q
    ||||| |||||| | ||| ||||| |||||||||||| ||||||||||||||||||||||||    
T  15679690 cttattccaattctttttgataatcattgtttcaattatctaattgcttcaggtgttgaatt 15679629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 554 - 625
Target Start/End: Complemental strand, 16694101 - 16694030
Alignment:
Q  554 aaccaatatactgtacattgtgaaatataattgcctagtaaatacatacaagtataaagaaaaccatcaagt 625  Q
    |||||||||| ||| ||||||||||||||| |||   ||||||||||| |||||| | ||||||||||||||    
T  16694101 aaccaatatattgtgcattgtgaaatataactgctaggtaaatacataaaagtattacgaaaaccatcaagt 16694030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 554 - 625
Target Start/End: Complemental strand, 17668337 - 17668266
Alignment:
Q  554 aaccaatatactgtacattgtgaaatataattgcctagtaaatacatacaagtataaagaaaaccatcaagt 625  Q
    |||||||||| ||| ||||||||||||||| |||   ||||||||||| |||||| | ||||||||||||||    
T  17668337 aaccaatatattgtgcattgtgaaatataactgctaggtaaatacataaaagtattacgaaaaccatcaagt 17668266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 19597453 - 19597488
Alignment:
Q  7 agctttcaacatattcattggcaccaaaccactgta 42  Q
    ||||||||||||||||||||||||||||||||||||    
T  19597453 agctttcaacatattcattggcaccaaaccactgta 19597488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 896 - 938
Target Start/End: Original strand, 12379716 - 12379758
Alignment:
Q  896 attgtttcaattctctaattgcttcaggtgttgaattccaatt 938  Q
    |||||||||||||||||||||||||| ||||||||||| ||||    
T  12379716 attgtttcaattctctaattgcttcaagtgttgaattctaatt 12379758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 871 - 933
Target Start/End: Complemental strand, 15679769 - 15679708
Alignment:
Q  871 cttatcccaattatctttaataatgattgtttcaattctctaattgcttcaggtgttgaattc 933  Q
    ||||| |||||| | ||| ||||| |||||||||||||||||||||||||| |||||||||||    
T  15679769 cttattccaattctatttgataat-attgtttcaattctctaattgcttcaagtgttgaattc 15679708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 711 - 769
Target Start/End: Complemental strand, 16693981 - 16693923
Alignment:
Q  711 tcactaaatcatgtattgacaaattatgaaacaatggtttcctaagtaactgttgtcat 769  Q
    ||||||||||||| ||||||||||||| |||||||| ||| |||||||  |||||||||    
T  16693981 tcactaaatcatgcattgacaaattatcaaacaatgtttttctaagtagttgttgtcat 16693923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 711 - 769
Target Start/End: Complemental strand, 17668217 - 17668159
Alignment:
Q  711 tcactaaatcatgtattgacaaattatgaaacaatggtttcctaagtaactgttgtcat 769  Q
    ||||||||||||| ||||||||||||| |||||||| ||| |||||||  |||||||||    
T  17668217 tcactaaatcatgcattgacaaattatcaaacaatgtttttctaagtagttgttgtcat 17668159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 877 - 927
Target Start/End: Original strand, 12379763 - 12379813
Alignment:
Q  877 ccaattatctttaataatgattgtttcaattctctaattgcttcaggtgtt 927  Q
    |||||| ||||| | ||| |||||||||||| |||||||||||||||||||    
T  12379763 ccaattctctttgaaaatcattgtttcaattatctaattgcttcaggtgtt 12379813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 1e-62; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 785 - 1072
Target Start/End: Original strand, 31119840 - 31120136
Alignment:
Q  785 atttgtaagaaaatcattattgattctcaccattttcttaaatcattctctcttcaggtgaattgttttaggtttacgnnnnnnnncttatcccaattat 884  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |        ||||| |  ||| |    
T  31119840 atttgtaagaaaatcattattgattctcaccattttcttaaatcattctctcttcagttgaattgttttaggtttatgttttttttcttattctgattct 31119939  T
Q  885 ctttaataatgattgtttcaattctctaattgcttcaggtgttgaattccaattgaattggtttatgtattttccaattgaatcgattatttaattcact 984  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||  ||||  || |||||| |||||  ||||||||    
T  31119940 ctttgataatgattgtttcaattctctaattgcttcaggcgttgaattctaattgaattgatttatgcttttttgaactgaatccattatcgaattcact 31120039  T
Q  985 aattctca-cattattaaattct-attg-attga--ttttgc-tttcacaa-tgaagtatgtattgtacacaca--tgaataatattaatgaattgt 1072  Q
    |||||||| |||||||||||||| |||| |||||  |||||| ||| |||| |||| ||||||  |||||||||  |||||||||||||||||||||    
T  31120040 aattctcaccattattaaattctaattgaattgattttttgctttttacaattgaaatatgtaccgtacacacacgtgaataatattaatgaattgt 31120136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 871 - 932
Target Start/End: Complemental strand, 18582553 - 18582492
Alignment:
Q  871 cttatcccaattatctttaataatgattgtttcaattctctaattgcttcaggtgttgaatt 932  Q
    ||||| |||||| ||||| ||||| |||||||||||| |||||||| |||||||||||||||    
T  18582553 cttattccaattctctttgataatcattgtttcaattatctaattgtttcaggtgttgaatt 18582492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 871 - 932
Target Start/End: Complemental strand, 25472255 - 25472194
Alignment:
Q  871 cttatcccaattatctttaataatgattgtttcaattctctaattgcttcaggtgttgaatt 932  Q
    ||||| |||||| ||||| ||||| |||||||||||| |||||||||| |||||||||||||    
T  25472255 cttattccaattctctttgataatcattgtttcaattatctaattgctccaggtgttgaatt 25472194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 871 - 932
Target Start/End: Original strand, 38697255 - 38697316
Alignment:
Q  871 cttatcccaattatctttaataatgattgtttcaattctctaattgcttcaggtgttgaatt 932  Q
    ||||| |||||| ||||| ||||| |||||||||||| |||||||| |||||||||||||||    
T  38697255 cttattccaattctctttgataatcattgtttcaattatctaattgtttcaggtgttgaatt 38697316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 871 - 938
Target Start/End: Complemental strand, 25472333 - 25472267
Alignment:
Q  871 cttatcccaattatctttaataatgattgtttcaattctctaattgcttcaggtgttgaattccaatt 938  Q
    ||||| |||||| | ||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||    
T  25472333 cttattccaattctatttgataat-attgtttcaattctctaattgcttcaagtgttgaattctaatt 25472267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 265
Target Start/End: Complemental strand, 35283443 - 35283287
Alignment:
Q  113 gatcttggttcatttgtggggaggggcgtaataaaacttttgttttcttggattggtggttgaaccaaat----tgtattcaaagcatataatttcctga 208  Q
    |||||||||||||||||| |||||| ||||||||||  ||||||||||   | ||||||||| ||| |||    ||| ||| |||||| ||||||| |||    
T  35283443 gatcttggttcatttgtgaggagggacgtaataaaaaatttgttttctcataatggtggttggacccaattggatgtcttcgaagcatgtaatttcttga 35283344  T
Q  209 cttctttgtaatgggcttcgagtaccccatgtacacgttttaataaaatcttgctta 265  Q
    ||| |||||| |||  ||| |||| | ||| | |  ||||||||||||| |||||||    
T  35283343 cttatttgtattggatttcaagtatctcatatccttgttttaataaaattttgctta 35283287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 871 - 938
Target Start/End: Original strand, 38697177 - 38697243
Alignment:
Q  871 cttatcccaattatctttaataatgattgtttcaattctctaattgcttcaggtgttgaattccaatt 938  Q
    ||||| |||||| | ||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||    
T  38697177 cttattccaattctatttgataat-attgtttcaattctctaattgcttcaagtgttgaattctaatt 38697243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 263
Target Start/End: Original strand, 21188775 - 21188828
Alignment:
Q  210 ttctttgtaatgggcttcgagtaccccatgtacacgttttaataaaatcttgct 263  Q
    ||||||||||| || |||||||||||| ||||| |||||||||||| |||||||    
T  21188775 ttctttgtaataggtttcgagtaccccttgtactcgttttaataaattcttgct 21188828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 871 - 938
Target Start/End: Complemental strand, 18582631 - 18582565
Alignment:
Q  871 cttatcccaattatctttaataatgattgtttcaattctctaattgcttcaggtgttgaattccaatt 938  Q
    ||||| |||||| | ||| |||||| ||||||| ||||||||||||||||| ||||||||||| ||||    
T  18582631 cttattccaattctatttgataatg-ttgtttcgattctctaattgcttcaagtgttgaattctaatt 18582565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 2e-55; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 778 - 981
Target Start/End: Complemental strand, 5384493 - 5384288
Alignment:
Q  778 aattgcaatttgtaagaaaatcattattgattctcaccattttcttaaatcattctctcttcaggtgaattgttttaggtttacg--nnnnnnnncttat 875  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||| |          |||||    
T  5384493 aattgcaatttgtaagaaaatcattattgattctcacaattttcttaaatcattctctcttcagatgtattgttttaggtttatgttttttttttcttat 5384394  T
Q  876 cccaattatctttaataatgattgtttcaattctctaattgcttcaggtgttgaattccaattgaattggtttatgtattttccaattgaatcgattatt 975  Q
     |||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||  ||||||||||||||| ||| ||    
T  5384393 tccaattctctttgataatgattgtttcaattctctaattgctttaggtgttgaattctaattgaattgatttatgctttttccaattgaatccattttt 5384294  T
Q  976 taattc 981  Q
     |||||    
T  5384293 gaattc 5384288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 58 - 234
Target Start/End: Complemental strand, 30219381 - 30219203
Alignment:
Q  58 aaaggcaaagtttcaaatgctttggaagtggtagatcacataaagcgtctatcgtgatcttggttcatttgtggggaggggcgtaataaaacttttgttt 157  Q
    ||||||||||||  ||||  |||||| ||||| |||| |||||||||||||| ||| | ||||||||| | ||||||||||| ||||||||  |||||||    
T  30219381 aaaggcaaagttgtaaattatttggaggtggtcgatcgcataaagcgtctatggtggttttggttcatat-tggggaggggcataataaaaaatttgttt 30219283  T
Q  158 tcttggattggtggttgaaccaaat----tgtattcaaagcatataatttcctgacttctttgtaatgggcttcgagtacc 234  Q
     ||  ||||||||||| ||||  ||    ||| |||||| ||| ||||||| ||||||  |||||||||||||||||||||    
T  30219282 cctcagattggtggttaaaccctattatatgtcttcaaaacatgtaatttcttgactt-attgtaatgggcttcgagtacc 30219203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 871 - 932
Target Start/End: Complemental strand, 14033321 - 14033260
Alignment:
Q  871 cttatcccaattatctttaataatgattgtttcaattctctaattgcttcaggtgttgaatt 932  Q
    ||||| |||||| ||||| ||||| |||||||||||| ||||||||||||| ||||||||||    
T  14033321 cttattccaattctctttgataatcattgtttcaattatctaattgcttcatgtgttgaatt 14033260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 871 - 938
Target Start/End: Original strand, 38052971 - 38053037
Alignment:
Q  871 cttatcccaattatctttaataatgattgtttcaattctctaattgcttcaggtgttgaattccaatt 938  Q
    ||||| |||||| | ||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||    
T  38052971 cttattccaattctatttgataat-attgtttcaattctctaattgcttcaagtgttgaattctaatt 38053037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 871 - 932
Target Start/End: Original strand, 38053050 - 38053112
Alignment:
Q  871 cttatcccaattatctttaataatgattgttt-caattctctaattgcttcaggtgttgaatt 932  Q
    ||||| |||||| ||||| ||||| ||||||| ||||| ||||||||||||||||||||||||    
T  38053050 cttattccaattctctttgataatcattgttttcaattatctaattgcttcaggtgttgaatt 38053112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 871 - 932
Target Start/End: Original strand, 51315026 - 51315086
Alignment:
Q  871 cttatcccaattatctttaataatgattgtttcaattctctaattgcttcaggtgttgaatt 932  Q
    ||||| |||||| | ||| ||||| |||||||||||||||||||||||||| ||| ||||||    
T  51315026 cttattccaattctatttgataat-attgtttcaattctctaattgcttcaagtgatgaatt 51315086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 871 - 932
Target Start/End: Original strand, 51315105 - 51315166
Alignment:
Q  871 cttatcccaattatctttaataatgattgtttcaattctctaattgcttcaggtgttgaatt 932  Q
    ||||| |||||| ||||| ||||| |||||||||||| | ||||||||  ||||||||||||    
T  51315105 cttattccaattctctttgataatcattgtttcaattatgtaattgctcgaggtgttgaatt 51315166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 2e-52; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 778 - 1070
Target Start/End: Original strand, 18616474 - 18616767
Alignment:
Q  778 aattgcaatttgtaagaaaatcattattgatt-ctcaccattttcttaaatcattctctcttcaggtgaattgttttaggtttacg-----nnnnnnnnc 871  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||| |             |    
T  18616474 aattgcaatttgtaagaaaatcattattgatttctcaccattttcttaaatcattctctcttcaagtggattgttttaggtttatgttttttttttcttc 18616573  T
Q  872 ttatcccaattatctttaataatgattgtttcaattctctaattgcttcaggtgttgaattccaattgaattggtttatgtattttccaattgaatcgat 971  Q
    |||| |||||| ||||| ||||| |||||||||||||||||||  ||| ||||||||||||| |||||||||| ||||||  |||||||||| |||| ||    
T  18616574 ttattccaattctctttgataattattgtttcaattctctaatatcttgaggtgttgaattctaattgaattgatttatgacttttccaattaaatccat 18616673  T
Q  972 tatttaattcactaattctca-cattattaaattctattgattgattttgctttcac-aatgaagtatgtattgtacacacatgaataatattaatgaat 1069  Q
    |||| |||||||||||||||| ||||||| |     |||||||  |||   ||| || | ||||| ||||||||||||||||||||||||||||||||||    
T  18616674 tattgaattcactaattctcaccattattga-----attgatt--tttgttttttacgattgaagcatgtattgtacacacatgaataatattaatgaat 18616766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 871 - 932
Target Start/End: Complemental strand, 9533918 - 9533857
Alignment:
Q  871 cttatcccaattatctttaataatgattgtttcaattctctaattgcttcaggtgttgaatt 932  Q
    ||||| |||||| ||||| ||||| ||||||| |||| ||||||||||||||||||||||||    
T  9533918 cttattccaattctctttgataatcattgtttgaattatctaattgcttcaggtgttgaatt 9533857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 871 - 932
Target Start/End: Complemental strand, 31474761 - 31474700
Alignment:
Q  871 cttatcccaattatctttaataatgattgtttcaattctctaattgcttcaggtgttgaatt 932  Q
    ||||| |||||| ||||| ||||| |||||||||||| || ||||| |||||||||||||||    
T  31474761 cttattccaattctctttgataatcattgtttcaattatcaaattgtttcaggtgttgaatt 31474700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 871 - 938
Target Start/End: Complemental strand, 9533997 - 9533931
Alignment:
Q  871 cttatcccaattatctttaataatgattgtttcaattctctaattgcttcaggtgttgaattccaatt 938  Q
    ||||| |||||| | ||| ||||| ||||||||||||||||||||||||||  |||||||||| ||||    
T  9533997 cttattccaattctatttgataat-attgtttcaattctctaattgcttcaaatgttgaattctaatt 9533931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 871 - 938
Target Start/End: Complemental strand, 31474839 - 31474773
Alignment:
Q  871 cttatcccaattatctttaataatgattgtttcaattctctaattgcttcaggtgttgaattccaatt 938  Q
    ||||| |||||| | ||| ||||| |||||||||||||||||||||||||| || |||||||| ||||    
T  31474839 cttattccaattctatttgataat-attgtttcaattctctaattgcttcaagttttgaattctaatt 31474773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 5e-25; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 64 - 264
Target Start/End: Complemental strand, 36233950 - 36233748
Alignment:
Q  64 aaagtttcaaatgctttggaagtggtagatcacataaagcgtctatcgtgatcttggttcatttgtggggaggggcgtaataaaacttttgttttcttgg 163  Q
    |||||| ||||| |||| ||||||||  ||| | ||||||||||||||||||||| |||||| ||| ||||||||| ||||||||  |||||||||| ||    
T  36233950 aaagttgcaaattctttagaagtggtcaatctcgtaaagcgtctatcgtgatcttagttcatatgtagggaggggcataataaaaaatttgttttctcgg 36233851  T
Q  164 attggtggttgaaccaaattgtat----tcaaagcatataatttcctgacttctttgtaatgggcttcgagtaccccatgtacacgttttaataaaatct 259  Q
    ||| |||||||||||  |||||||    ||||| ||| ||||||| |||||| || ||||||| ||| ||||||||  ||||  |  |||||||||||||    
T  36233850 attagtggttgaaccccattgtatatcttcaaaacatgtaatttcttgacttatt-gtaatggacttggagtaccct-tgtattcaatttaataaaatct 36233753  T
Q  260 tgctt 264  Q
    |||||    
T  36233752 tgctt 36233748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 872 - 932
Target Start/End: Original strand, 6950805 - 6950865
Alignment:
Q  872 ttatcccaattatctttaataatgattgtttcaattctctaattgcttcaggtgttgaatt 932  Q
    |||| |||||| ||||| ||||| |||||||||||| ||||||||||||||||||||||||    
T  6950805 ttattccaattctctttgataatcattgtttcaattatctaattgcttcaggtgttgaatt 6950865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 871 - 932
Target Start/End: Original strand, 41869867 - 41869928
Alignment:
Q  871 cttatcccaattatctttaataatgattgtttcaattctctaattgcttcaggtgttgaatt 932  Q
    ||||| |||||| ||||| ||||| |||||||||||| |||||||| |||||||||||||||    
T  41869867 cttattccaattctctttgataatcattgtttcaattatctaattgtttcaggtgttgaatt 41869928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 871 - 938
Target Start/End: Original strand, 41869789 - 41869855
Alignment:
Q  871 cttatcccaattatctttaataatgattgtttcaattctctaattgcttcaggtgttgaattccaatt 938  Q
    ||||| |||||| | ||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||    
T  41869789 cttattccaattctatttgataat-attgtttcaattctctaattgcttcaagtgttgaattctaatt 41869855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 871 - 938
Target Start/End: Original strand, 6950727 - 6950793
Alignment:
Q  871 cttatcccaattatctttaataatgattgtttcaattctctaattgcttcaggtgttgaattccaatt 938  Q
    ||||| |||||| | ||| ||||| ||||||||||||||||| |||||||| ||||||||||| ||||    
T  6950727 cttattccaattctatttgataat-attgtttcaattctctagttgcttcaagtgttgaattctaatt 6950793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 4e-16; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 39286540 - 39286600
Alignment:
Q  64 aaagtttcaaatgctttggaagtggtagatcacataaagcgtctatcgtgatcttggttca 124  Q
    |||||| |||||| |||||| ||||| ||||||||||||||||||||||||||||||||||    
T  39286540 aaagttgcaaatgatttggaggtggttgatcacataaagcgtctatcgtgatcttggttca 39286600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 871 - 932
Target Start/End: Complemental strand, 1419803 - 1419742
Alignment:
Q  871 cttatcccaattatctttaataatgattgtttcaattctctaattgcttcaggtgttgaatt 932  Q
    ||||| |||||| ||||| ||||| |||||||||||| |||||||| |||||||||||||||    
T  1419803 cttattccaattctctttgataatcattgtttcaattatctaattgtttcaggtgttgaatt 1419742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 871 - 932
Target Start/End: Original strand, 30377367 - 30377428
Alignment:
Q  871 cttatcccaattatctttaataatgattgtttcaattctctaattgcttcaggtgttgaatt 932  Q
    ||||| |||||| ||||| ||||| |||||||||||| |||||||| |||||||||||||||    
T  30377367 cttattccaattctctttgataatcattgtttcaattatctaattgtttcaggtgttgaatt 30377428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 871 - 938
Target Start/End: Complemental strand, 1419881 - 1419815
Alignment:
Q  871 cttatcccaattatctttaataatgattgtttcaattctctaattgcttcaggtgttgaattccaatt 938  Q
    ||||| |||||| | ||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||    
T  1419881 cttattccaattctatttgataat-attgtttcaattctctaattgcttcaagtgttgaattctaatt 1419815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 871 - 938
Target Start/End: Original strand, 30377289 - 30377355
Alignment:
Q  871 cttatcccaattatctttaataatgattgtttcaattctctaattgcttcaggtgttgaattccaatt 938  Q
    ||||| |||||| | ||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||    
T  30377289 cttattccaattctatttgataat-attgtttcaattctctaattgcttcaagtgttgaattctaatt 30377355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 896 - 938
Target Start/End: Original strand, 36641113 - 36641155
Alignment:
Q  896 attgtttcaattctctaattgcttcaggtgttgaattccaatt 938  Q
    |||||||||||||||||||||||||| ||||||||||| ||||    
T  36641113 attgtttcaattctctaattgcttcaagtgttgaattctaatt 36641155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 878 - 932
Target Start/End: Original strand, 36641175 - 36641229
Alignment:
Q  878 caattatctttaataatgattgtttcaattctctaattgcttcaggtgttgaatt 932  Q
    ||||| ||||| ||||| |||||||||||| ||||||||||||| ||||||||||    
T  36641175 caattctctttgataatcattgtttcaattatctaattgcttcaagtgttgaatt 36641229  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 263
Target Start/End: Complemental strand, 36468669 - 36468620
Alignment:
Q  214 ttgtaatgggcttcgagtaccccatgtacacgttttaataaaatcttgct 263  Q
    ||||||| || |||||||||||| ||||| ||||||||||||||||||||    
T  36468669 ttgtaataggtttcgagtaccccttgtactcgttttaataaaatcttgct 36468620  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 187
Target Start/End: Original strand, 27479471 - 27479565
Alignment:
Q  91 gatcacataaagcgtctatcgtgatcttggttcatttgtggggaggggcgtaataaaacttttgttttcttggattggtggttgaaccaaattgtat 187  Q
    |||| |||||| ||| ||||||| ||  ||||||| |||||| | |||||||||||||  |  ||||||||| |||||||||||||||  |||||||    
T  27479471 gatcgcataaaacgtttatcgtggtccgggttcatatgtgggtaagggcgtaataaaaaat--gttttcttgaattggtggttgaacctcattgtat 27479565  T

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Target: scaffold0352 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 187
Target Start/End: Original strand, 8620 - 8702
Alignment:
Q  104 gtctatcgtgatcttggttcatttgtggggaggggcgtaataaaacttttgttttcttggattggtggttgaaccaaattgtat 187  Q
    |||||||||||| ||||||||| | |||||||||||||||| ||| |||| |||||||||||||||| |||||||  |||||||    
T  8620 gtctatcgtgattttggttcatatatggggaggggcgtaat-aaattttttttttcttggattggtgcttgaaccccattgtat 8702  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 871 - 932
Target Start/End: Complemental strand, 9372177 - 9372116
Alignment:
Q  871 cttatcccaattatctttaataatgattgtttcaattctctaattgcttcaggtgttgaatt 932  Q
    ||||| |||||| ||||| ||||| |||||||||||| ||||||||||||||||||||||||    
T  9372177 cttattccaattctctttgataatcattgtttcaattatctaattgcttcaggtgttgaatt 9372116  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 871 - 932
Target Start/End: Original strand, 9957054 - 9957115
Alignment:
Q  871 cttatcccaattatctttaataatgattgtttcaattctctaattgcttcaggtgttgaatt 932  Q
    ||||| |||||| ||||| ||||| |||||||||||| ||||||||||||||||||||||||    
T  9957054 cttattccaattctctttgataatcattgtttcaattatctaattgcttcaggtgttgaatt 9957115  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 871 - 932
Target Start/End: Complemental strand, 32178783 - 32178722
Alignment:
Q  871 cttatcccaattatctttaataatgattgtttcaattctctaattgcttcaggtgttgaatt 932  Q
    ||||| |||||| ||||| ||||| |||||||||||| ||||||||||||||||||||||||    
T  32178783 cttattccaattctctttgataatcattgtttcaattatctaattgcttcaggtgttgaatt 32178722  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 871 - 932
Target Start/End: Complemental strand, 1346708 - 1346647
Alignment:
Q  871 cttatcccaattatctttaataatgattgtttcaattctctaattgcttcaggtgttgaatt 932  Q
    ||||| |||||| ||||| ||||| |||||||||||| |||||||| |||||||||||||||    
T  1346708 cttattccaattctctttgataatcattgtttcaattatctaattgtttcaggtgttgaatt 1346647  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 871 - 938
Target Start/End: Complemental strand, 32178862 - 32178796
Alignment:
Q  871 cttatcccaattatctttaataatgattgtttcaattctctaattgcttcaggtgttgaattccaatt 938  Q
    ||||| |||||| | ||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||    
T  32178862 cttattccaattctatttgataat-attgtttcaattctctaattgcttcaagtgttgaattctaatt 32178796  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 896 - 938
Target Start/End: Complemental strand, 1346765 - 1346723
Alignment:
Q  896 attgtttcaattctctaattgcttcaggtgttgaattccaatt 938  Q
    |||||||||||||||||||||||||| ||||||||||| ||||    
T  1346765 attgtttcaattctctaattgcttcaagtgttgaattctaatt 1346723  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 896 - 938
Target Start/End: Complemental strand, 9372233 - 9372191
Alignment:
Q  896 attgtttcaattctctaattgcttcaggtgttgaattccaatt 938  Q
    |||||||||||||||||||||||||| ||||||||||| ||||    
T  9372233 attgtttcaattctctaattgcttcaagtgttgaattctaatt 9372191  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 187
Target Start/End: Complemental strand, 29871869 - 29871787
Alignment:
Q  105 tctatcgtgatcttggttcatttgtggggaggggcgtaataaaacttttgttttcttggattggtggttgaaccaaattgtat 187  Q
    ||||| ||| |||| ||||||||||||||| |||| ||||||||  ||| ||||||   ||||||||||||||| ||||||||    
T  29871869 tctattgtggtcttcgttcatttgtggggaagggcataataaaaactttattttctcatattggtggttgaacccaattgtat 29871787  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 871 - 938
Target Start/End: Original strand, 9956975 - 9957041
Alignment:
Q  871 cttatcccaattatctttaataatgattgtttcaattctctaattgcttcaggtgttgaattccaatt 938  Q
    ||||| |||||| | ||| ||||| ||||||| |||||||||||||||||| ||||||||||| ||||    
T  9956975 cttattccaattctatttgataat-attgttttaattctctaattgcttcaagtgttgaattctaatt 9957041  T

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