View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4522-Insertion-4 (Length: 646)

Name: NF4522-Insertion-4
Description: NF4522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4522-Insertion-4
NF4522-Insertion-4
[»] chr7 (2 HSPs)
chr7 (141-646)||(41700076-41700582)
chr7 (69-119)||(41700584-41700634)


Alignment Details
Target: chr7 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 141 - 646
Target Start/End: Complemental strand, 41700582 - 41700076
Alignment:
Q  141 attcacattgtcgtttttagaattgcatttgaaaatgatagagattatctccggcttgaatactagatgagtcaactgcatgttgttcacaactcaaatg 240  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  41700582 attcactttgtcgtttttagaattgcatttgaaaatgatagagattatctcctgcttgaatactagatgagtcaactgcatgttgttcacaactcaaatg 41700483  T
Q  241 agatgtttcgaattttataagagaatgctttgcttgcgccaagtttccgttggtatcttatcttatcacatatggttttatttggtaggactaaatctca 340  Q
    ||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41700482 agatgtttcgaattttataagagaatgctt-----gcgccaagtttccgttggtatcttatcttatcacatatggttttatttggtaggactaaatctca 41700388  T
Q  341 caatttattttttagaaattttatagaaatagaaataatattcctaactttaaccaacaataaatttgatcaagtgatttagacaagtaagcaagtgatg 440  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  41700387 caatttattttttagaaattttatagaaatagaaataatattcctaactttaaccaacaataaatttgatcaagtgatttagacacgtaagcaagtgatg 41700288  T
Q  441 agggcttttgatccttaataaatgtatgaagaaattcaattgaaaaagagaactcgtctgattgagattctccaatgg-acattaatcacgataaaaact 539  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||| |||||||||||||||||||||    
T  41700287 agggcttttgatccttactaaatgtatgaagaaattcaattgaaaaggagaactcgtctgattgagattctctgatggaacattaatcacgataaaaact 41700188  T
Q  540 ttgtagcaataatataacatgacaac-aaaacaatccccccttttcc----nnnnnnnnntaacaatccccctaactttacatttaaattacattccact 634  Q
     ||||||||||||||||||||||||| ||||||||||||||| || |              |||||||||||||||||||||||||||||||||||||||    
T  41700187 ctgtagcaataatataacatgacaacaaaaacaatcccccctctttcaaaaaaaaaaaaaaaacaatccccctaactttacatttaaattacattccact 41700088  T
Q  635 agtttgagttgg 646  Q
    ||||||||||||    
T  41700087 agtttgagttgg 41700076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 41700634 - 41700584
Alignment:
Q  69 ggaatacacataagccaaatccattaatatatgtcaactgtattatgaact 119  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  41700634 ggaaaacacataagccaaatccattaaaatatgtcaactgtattatgaact 41700584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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