View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4522-Insertion-6 (Length: 488)

Name: NF4522-Insertion-6
Description: NF4522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4522-Insertion-6
NF4522-Insertion-6
[»] chr5 (5 HSPs)
chr5 (204-468)||(34153932-34154208)
chr5 (8-141)||(34153735-34153869)
chr5 (204-419)||(41038061-41038279)
chr5 (205-360)||(41361370-41361529)
chr5 (423-460)||(41038308-41038345)
[»] chr1 (3 HSPs)
chr1 (208-419)||(21430956-21431150)
chr1 (326-404)||(2114965-2115043)
chr1 (326-400)||(2079138-2079212)
[»] chr2 (3 HSPs)
chr2 (206-416)||(13310453-13310668)
chr2 (351-404)||(10038602-10038655)
chr2 (351-404)||(10098998-10099051)
[»] scaffold0635 (1 HSPs)
scaffold0635 (351-404)||(8415-8468)
[»] chr4 (6 HSPs)
chr4 (209-298)||(6800180-6800268)
chr4 (283-383)||(6800279-6800384)
chr4 (326-416)||(27074371-27074461)
chr4 (326-416)||(27154462-27154552)
chr4 (346-402)||(6804713-6804769)
chr4 (204-322)||(1393006-1393125)
[»] chr3 (2 HSPs)
chr3 (204-257)||(53833662-53833716)
chr3 (351-388)||(53833558-53833595)
[»] chr6 (1 HSPs)
chr6 (325-414)||(14802751-14802839)


Alignment Details
Target: chr5 (Bit Score: 140; Significance: 4e-73; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 204 - 468
Target Start/End: Original strand, 34153932 - 34154208
Alignment:
Q  204 ctcagtaaaataaagaagaaagaaaagcttatcgattgttggctgaggcgtgcaattgcactgggcttaagagcatttctcgccaccacaggtcatt--c 301  Q
    |||||||||||||||||||||||||||||||| |      |||||||||||||||||||||||||||||||||||||||  |||||||||||||| |  |    
T  34153932 ctcagtaaaataaagaagaaagaaaagcttattg------ggctgaggcgtgcaattgcactgggcttaagagcatttc--gccaccacaggtcaatgac 34154023  T
Q  302 ctgatgcagttggcctcaaaga----gctctccaagatacagcagccacttctcactaacactgcacgtgaactagcaagggcacatgaaccactcttgg 397  Q
    |||||||||||||||||||||     |||||||| |||||| ||||||||| ||||||||||||||||||||| |||||||||||| |||||||| ||||    
T  34154024 ctgatgcagttggcctcaaagctagtgctctccaggatacaacagccacttttcactaacactgcacgtgaaccagcaagggcacaggaaccactattgg 34154123  T
Q  398 atgctcatgggaacttaatt--------------gtgactaagtgatggaagaatcaattatacttcagtactatatcactgtat 468  Q
    ||||||||||||||||||||              |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34154124 atgctcatgggaacttaattgttatttggtattagtgactaagtgatggaagaatcaattatacttcagtactatatcactgtat 34154208  T

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Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 8 - 141
Target Start/End: Original strand, 34153735 - 34153869
Alignment:
Q  8 gttcgaacaaccgacacgacacggacaccggtggttgcattcaattattatgtatcaagttattattggggtcagtat-gtttgcgtctgtttcagtgta 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||    
T  34153735 gttcgaacaaccgacacgacacggacaccggtggttgcattcaattattatgtatcaagttattattggtgtcagtatcgtttgcgtctgtttcaatgta 34153834  T
Q  107 gcattgataggatactaatgttggaaaattgacac 141  Q
    |||||||||||||||||||||||||||||||||||    
T  34153835 gcattgataggatactaatgttggaaaattgacac 34153869  T

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Target: chr5; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 204 - 419
Target Start/End: Original strand, 41038061 - 41038279
Alignment:
Q  204 ctcagtaaaataaagaagaaagaaa-agcttatcgattgttggctgaggcgtgcaattgcactgggcttaagagcatttctcgccaccacaggtcatt-- 300  Q
    |||||||||||||||||||| |||| || |||||| | |||||||||||||||||||||||  | |||||||||||||||  ||||||||| |||| |      
T  41038061 ctcagtaaaataaagaagaaggaaagagtttatcggtcgttggctgaggcgtgcaattgcatcgagcttaagagcatttc--gccaccacatgtcaatga 41038158  T
Q  301 cctgatgcagttggcctcaaaga----gctctccaagatacagcagccacttctcactaacactgcacgtgaactagcaagggcacatgaaccactcttg 396  Q
    |||||| |||||||||||||||     ||||| || |||||| |||||||||||| |||||||||||||| |||||||||||||| || |||||||||||    
T  41038159 cctgatacagttggcctcaaagctagtgctcttcaggatacaacagccacttctcgctaacactgcacgttaactagcaagggca-at-aaccactcttg 41038256  T
Q  397 gatgctcatgggaacttaattgt 419  Q
     | ||||||||||||||||||||    
T  41038257 aaagctcatgggaacttaattgt 41038279  T

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Target: chr5; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 205 - 360
Target Start/End: Complemental strand, 41361529 - 41361370
Alignment:
Q  205 tcagtaaaataaagaagaaagaaa-agcttatcgattgttggctgaggcgtgcaattgcactgggcttaagagcatttctcgccaccacaggtcatt--c 301  Q
    ||||||||||||||||||||| || | ||||||| |  |||||||||||||||||  ||||||||||||||||||||  ||||| |||||||||| |  |    
T  41361529 tcagtaaaataaagaagaaaggaagaacttatcggtccttggctgaggcgtgcaaacgcactgggcttaagagcatt--tcgccgccacaggtcaatcac 41361432  T
Q  302 ctgatgcagttggcctcaa----agagctctccaagatacagcagccacttctcactaacact 360  Q
    |||||||||||||||||||    || |||||||| |||||| ||| | |||||||||||||||    
T  41361431 ctgatgcagttggcctcaagactagtgctctccaggatacaacag-ctcttctcactaacact 41361370  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 423 - 460
Target Start/End: Original strand, 41038308 - 41038345
Alignment:
Q  423 taagtgatggaagaatcaattatacttcagtactatat 460  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  41038308 taagtgatggaagaatcaattatacttcaatactatat 41038345  T

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Target: chr1 (Bit Score: 76; Significance: 6e-35; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 208 - 419
Target Start/End: Original strand, 21430956 - 21431150
Alignment:
Q  208 gtaaaataaagaagaaagaaaagcttatcgattgttggctgaggcgtgcaattgcactgggcttaagagcatttctcgccaccacaggtcatt--cctga 305  Q
    |||||||||||| ||||||||||||||||| | |||||||||||| |||||||  ||||| ||||||||||||||  | || ||||||||| |  |||||    
T  21430956 gtaaaataaagaggaaagaaaagcttatcggtcgttggctgaggcatgcaattatactggacttaagagcatttc--gtcatcacaggtcaatgacctga 21431053  T
Q  306 tgcagttggcctcaaagagctctccaagatacagcagccacttctcactaacactgcacgtgaactagcaagggcacatgaaccactcttggatgctcat 405  Q
    ||||||||||||||||                  ||||||||| |||||||||||| | ||||||||||||||||||| |||||||||||||||||||||    
T  21431054 tgcagttggcctcaaaa-----------------cagccacttgtcactaacactgtatgtgaactagcaagggcacaggaaccactcttggatgctcat 21431136  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 326 - 404
Target Start/End: Original strand, 2114965 - 2115043
Alignment:
Q  326 tctccaagatacagcagccacttctcactaacactgcacgtgaactagcaagggcacatgaaccactcttggatgctca 404  Q
    |||| |||||||| || ||||||||||||||| |||||| ||||||| ||| ||||||||||| | | |||||||||||    
T  2114965 tctcaaagatacatcaaccacttctcactaacgctgcacatgaactaacaatggcacatgaactattgttggatgctca 2115043  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 400
Target Start/End: Original strand, 2079138 - 2079212
Alignment:
Q  326 tctccaagatacagcagccacttctcactaacactgcacgtgaactagcaagggcacatgaaccactcttggatg 400  Q
    |||||| |||||| ||| ||| ||| |||||||| |||||| || |||||||| | ||||||||||| |||||||    
T  2079138 tctccaggatacaacagtcacgtcttactaacaccgcacgtaaattagcaaggtctcatgaaccacttttggatg 2079212  T

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Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 206 - 416
Target Start/End: Original strand, 13310453 - 13310668
Alignment:
Q  206 cagtaaaataaagaagaaa-gaaaagcttatcgattgttggctgaggcgtgcaattgcactgggcttaagagcatttctcgccaccacaggtcattc--c 302  Q
    ||||||||||||||||| | ||| |  |||||| | ||||| |||||| ||||| || | |||||||||||||||||| |  |||||||||||| ||  |    
T  13310453 cagtaaaataaagaagagatgaagaatttatcggtcgttggatgaggcatgcaaatgtattgggcttaagagcatttcac--caccacaggtcaatcacc 13310550  T
Q  303 tgatgcagttggcctcaaaga----gctctccaagatacagcagccacttctcactaacactgcacgtgaactagcaagggcacatgaaccactcttgga 398  Q
    ||||||||||||||||||||     |||||| | |||| | ||||||| ||||||||||||| |||||||| ||| |||||||||||||||||| |||||    
T  13310551 tgatgcagttggcctcaaagctagcgctctctaggataaaacagccacctctcactaacactacacgtgaattagtaagggcacatgaaccactattgga 13310650  T
Q  399 tgctcatgggaacttaat 416  Q
    || | | |||||||||||    
T  13310651 tgtttaagggaacttaat 13310668  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 351 - 404
Target Start/End: Complemental strand, 10038655 - 10038602
Alignment:
Q  351 cactaacactgcacgtgaactagcaagggcacatgaaccactcttggatgctca 404  Q
    ||||||||||||||||||||||| |||||||||||||| ||| |||||||||||    
T  10038655 cactaacactgcacgtgaactagtaagggcacatgaacaactattggatgctca 10038602  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 404
Target Start/End: Complemental strand, 10099051 - 10098998
Alignment:
Q  351 cactaacactgcacgtgaactagcaagggcacatgaaccactcttggatgctca 404  Q
    ||||||||||||| ||||||||| |||||||||||||| ||| |||||||||||    
T  10099051 cactaacactgcaagtgaactagtaagggcacatgaacaactattggatgctca 10098998  T

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Target: scaffold0635 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0635
Description:

Target: scaffold0635; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 351 - 404
Target Start/End: Original strand, 8415 - 8468
Alignment:
Q  351 cactaacactgcacgtgaactagcaagggcacatgaaccactcttggatgctca 404  Q
    ||||||||||||||||||||||| |||||||||||||| ||| |||||||||||    
T  8415 cactaacactgcacgtgaactagtaagggcacatgaacaactattggatgctca 8468  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 298
Target Start/End: Original strand, 6800180 - 6800268
Alignment:
Q  209 taaaataaagaagaaagaaa-agcttatcgattgttggctgaggcgtgcaattgcactgggcttaagagcatttctcgccaccacaggtca 298  Q
    ||||||||||||||||| || | ||||||| |  |||||||||||||||||  ||||||||||||||||||||  ||||| ||||||||||    
T  6800180 taaaataaagaagaaaggaagaacttatcggtccttggctgaggcgtgcaaacgcactgggcttaagagcatt--tcgccgccacaggtca 6800268  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 283 - 383
Target Start/End: Original strand, 6800279 - 6800384
Alignment:
Q  283 tcgccaccacaggtcattc--ctgatgcagttggcctcaa----agagctctccaagatacagcagccacttctcactaacactgcacgtgaactagcaa 376  Q
    ||||| |||||||||| ||  |||||||||||||||||||    || |||||||| |||||| ||||  || ||||||||||||||||||||| ||||||    
T  6800279 tcgccgccacaggtcaatcacctgatgcagttggcctcaagactagtgctctccaggatacaacagct-ctcctcactaacactgcacgtgaaatagcaa 6800377  T
Q  377 gggcaca 383  Q
    |||||||    
T  6800378 gggcaca 6800384  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 326 - 416
Target Start/End: Complemental strand, 27074461 - 27074371
Alignment:
Q  326 tctccaagatacagcagccacttctcactaacactgcacgtgaactagcaagggcacatgaaccactcttggatgctcatgggaacttaat 416  Q
    ||||||||||||| || |||||||||||||| | || || |||||||| ||||||||| ||||   | ||||||||||| |||||||||||    
T  27074461 tctccaagatacaacaaccacttctcactaatattgtacctgaactagtaagggcacaagaacagttattggatgctcaagggaacttaat 27074371  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 326 - 416
Target Start/End: Complemental strand, 27154552 - 27154462
Alignment:
Q  326 tctccaagatacagcagccacttctcactaacactgcacgtgaactagcaagggcacatgaaccactcttggatgctcatgggaacttaat 416  Q
    ||||||||||||| || |||||||||||||| | || || |||||||| ||||||||| ||||   | ||||||||||| |||||||||||    
T  27154552 tctccaagatacaacaaccacttctcactaatattgtacctgaactagtaagggcacaagaacagttattggatgctcaagggaacttaat 27154462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 402
Target Start/End: Original strand, 6804713 - 6804769
Alignment:
Q  346 cttctcactaacactgcacgtgaactagcaagggcacatgaaccactcttggatgct 402  Q
    |||||||||||||||||||||||| ||||||||||||  |||| ||| |||||||||    
T  6804713 cttctcactaacactgcacgtgaaatagcaagggcacgggaacaactattggatgct 6804769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 204 - 322
Target Start/End: Original strand, 1393006 - 1393125
Alignment:
Q  204 ctcagtaaaataaagaagaaa-gaaaagcttatcgattgttggctgaggcgtgcaattgcactgggcttaagagcatttctcgccaccacaggtcatt-- 300  Q
    ||||||||||||||||||||| ||| | ||||||| | |||| |||| |||||||| |  ||| || |||||||||||  ||||||||||| |||| |      
T  1393006 ctcagtaaaataaagaagaaatgaagaacttatcgctcgttgactgaagcgtgcaaatatactaggtttaagagcatt--tcgccaccacatgtcaatca 1393103  T
Q  301 cctgatgcagttggcctcaaag 322  Q
    ||| ||||||||||||||||||    
T  1393104 cctaatgcagttggcctcaaag 1393125  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 53833716 - 53833662
Alignment:
Q  204 ctcagtaaaataaagaagaaagaaa-agcttatcgattgttggctgaggcgtgca 257  Q
    |||||||||||||||||||||| || | ||||||||| |||||||||||||||||    
T  53833716 ctcagtaaaataaagaagaaaggaagaacttatcgatcgttggctgaggcgtgca 53833662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 388
Target Start/End: Complemental strand, 53833595 - 53833558
Alignment:
Q  351 cactaacactgcacgtgaactagcaagggcacatgaac 388  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  53833595 cactaacactgcacgtgaaatagcaagggcacgtgaac 53833558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 414
Target Start/End: Complemental strand, 14802839 - 14802751
Alignment:
Q  325 ctctccaagatacagcagccacttctcactaacactgcacgtgaactagcaagggcacatgaaccactcttggatgctcatgggaactta 414  Q
    ||||||| |||||| || ||||||||  ||| ||||||||||||| ||||||||   || ||| |||| |||||||||||||| ||||||    
T  14802839 ctctccaggatacaacaaccacttcttgctagcactgcacgtgaattagcaaggtttcaggaaacact-ttggatgctcatggaaactta 14802751  T

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