View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4522-Insertion-8 (Length: 242)
Name: NF4522-Insertion-8
Description: NF4522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4522-Insertion-8 |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0781 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 8 - 242
Target Start/End: Complemental strand, 2215815 - 2215581
Alignment:
| Q |
8 |
caatctactcgggagattcaattgttcctatcaagaggtagaatccgatgggcgtggacaacagatatgcacacatgtgtgcatgcgtgcgtacatccat |
107 |
Q |
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| T |
2215815 |
caatctactcgggagattcaattcttcctatcaagaggtagaatccgatgggcgtggacaacagatatgcacacatgtgtgcatgcgtgcgtacatccat |
2215716 |
T |
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| Q |
108 |
gtgcgtgttgtgtccttctattcttttacgaatattttcatagtgtattataattttgaaaattgaatattttcaacaacaatgggcgcatatcacacaa |
207 |
Q |
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| T |
2215715 |
gtgcgtgttgtgtccttctattcttttacgaatattttcatagtgtattataattttgaaaattgaatattttcaataacaatgggcgcatatcacacaa |
2215616 |
T |
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| Q |
208 |
cgatgccgtttcattacctcctattacgacctcat |
242 |
Q |
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| T |
2215615 |
cgatgccgtttcattacctcctgttacgacctcat |
2215581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 75 - 165
Target Start/End: Complemental strand, 2217070 - 2216980
Alignment:
| Q |
75 |
tgcacacatgtgtgcatgcgtgcgtacatccatgtgcgtgttgtgtccttctattcttttacgaatattttcatagtgtattataattttg |
165 |
Q |
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| T |
2217070 |
tgcacacatgcgtgcttgtgtgcgtgcgtcaatgtgagtgttgtgtccttgtattcttttacaaataattttatagtatattacaattttg |
2216980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0781 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: scaffold0781
Description:
Target: scaffold0781; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 8 - 242
Target Start/End: Complemental strand, 4272 - 4038
Alignment:
| Q |
8 |
caatctactcgggagattcaattgttcctatcaagaggtagaatccgatgggcgtggacaacagatatgcacacatgtgtgcatgcgtgcgtacatccat |
107 |
Q |
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| T |
4272 |
caatctactcgggagattcaattcttcctatcaagaggtagaatccgatgggcgtggacaacagatatgcaaaaatgtgtgcatgcgtgcgtacatccat |
4173 |
T |
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| Q |
108 |
gtgcgtgttgtgtccttctattcttttacgaatattttcatagtgtattataattttgaaaattgaatattttcaacaacaatgggcgcatatcacacaa |
207 |
Q |
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| T |
4172 |
gtgcgtgttgtgtccttttatttttttacgaatattttcatagtgtattataattttgaaaattgaatattttcaataacaatgggcgcatatcacacaa |
4073 |
T |
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| Q |
208 |
cgatgccgtttcattacctcctattacgacctcat |
242 |
Q |
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| T |
4072 |
cgatgccgtttcattacctcctgttacgacctcat |
4038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0781; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 165
Target Start/End: Complemental strand, 5526 - 5437
Alignment:
| Q |
75 |
tgcacacatgtgtgcatgcgtgcgtacatccatgtgcgtgttgtgtccttctattcttttacgaatattttcatagtgtattataattttg |
165 |
Q |
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| T |
5526 |
tgcacacatgcgtgcttgtgtgcgtgcgttcatgtgagtgttgtgtccttgtattcttttac-aataattttatagtatattacaattttg |
5437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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