View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4522-Insertion-9 (Length: 179)

Name: NF4522-Insertion-9
Description: NF4522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4522-Insertion-9
NF4522-Insertion-9
[»] chr7 (12 HSPs)
chr7 (15-179)||(4783311-4783475)
chr7 (15-179)||(4815740-4815904)
chr7 (15-179)||(4644162-4644314)
chr7 (57-179)||(4653951-4654073)
chr7 (57-179)||(4711590-4711712)
chr7 (57-179)||(4845530-4845652)
chr7 (57-179)||(4637312-4637434)
chr7 (57-179)||(4696708-4696830)
chr7 (57-179)||(4864377-4864502)
chr7 (57-179)||(4673158-4673280)
chr7 (57-126)||(4631438-4631507)
chr7 (57-179)||(4667396-4667515)


Alignment Details
Target: chr7 (Bit Score: 149; Significance: 6e-79; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 6e-79
Query Start/End: Original strand, 15 - 179
Target Start/End: Original strand, 4783311 - 4783475
Alignment:
Q  15 caacccttcactttggcttcatcgtgatgagaatcatatcgtcaaagaatattccatccaaatcaaaccaaacgagaagctaaacataagtttcattccc 114  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4783311 caacccttcactttggcttcatcatgatgagaatcatatcgtcaaagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattccc 4783410  T
Q  115 aacaacacaaaccaattgaatcctagttatgcttacattaacggaatcgaagttgtgtctatgcc 179  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  4783411 aacaacacaaaccaattgattcctagttatgctttcattaacggaatcgaagttgtgtctatgcc 4783475  T

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Target: chr7; HSP #2
Raw Score: 149; E-Value: 6e-79
Query Start/End: Original strand, 15 - 179
Target Start/End: Original strand, 4815740 - 4815904
Alignment:
Q  15 caacccttcactttggcttcatcgtgatgagaatcatatcgtcaaagaatattccatccaaatcaaaccaaacgagaagctaaacataagtttcattccc 114  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4815740 caacccttcactttggcttcatcatgatgagaatcatatcgtcaaagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattccc 4815839  T
Q  115 aacaacacaaaccaattgaatcctagttatgcttacattaacggaatcgaagttgtgtctatgcc 179  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  4815840 aacaacacaaaccaattgagtcctagttatgctttcattaacggaatcgaagttgtgtctatgcc 4815904  T

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Target: chr7; HSP #3
Raw Score: 67; E-Value: 5e-30
Query Start/End: Original strand, 15 - 179
Target Start/End: Complemental strand, 4644314 - 4644162
Alignment:
Q  15 caacccttcactttggcttcatcgtgatgagaatcatatcgtcaaagaatattccatccaaatcaaaccaaacgagaagctaaacataagtttcattccc 114  Q
    ||||||||||||||||||||||| |||||||||| ||||| ||||||| |||| ||||||||| ||| |||| |||||||||||||||| ||||||||||    
T  4644314 caacccttcactttggcttcatcatgatgagaataatatcatcaaagagtattgcatccaaattaaaacaaatgagaagctaaacataactttcattccc 4644215  T
Q  115 aacaacacaaaccaattgaatcctagttatgcttacattaacggaatcgaagttgtgtctatgcc 179  Q
     ||| ||           |||  ||||||||||| ||||||||||||||||||||||||||||||    
T  4644214 -acatca-----------aatgttagttatgctttcattaacggaatcgaagttgtgtctatgcc 4644162  T

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Target: chr7; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 57 - 179
Target Start/End: Complemental strand, 4654073 - 4653951
Alignment:
Q  57 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataagtttcattcccaacaacacaaaccaattgaatcctagttatgcttacattaac 156  Q
    ||||||||||| ||||||| || |||| ||  ||||||||||||||| |||||||||||||||||||||||| |  ||||||  |||||||| ||||||     
T  4654073 caaagaatattgcatccaagtccaaccgaataagaagctaaacataactttcattcccaacaacacaaaccattcaaatccttattatgctttcattaat 4653974  T
Q  157 ggaatcgaagttgtgtctatgcc 179  Q
    ||||| |||||||||||||||||    
T  4653973 ggaattgaagttgtgtctatgcc 4653951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 57 - 179
Target Start/End: Original strand, 4711590 - 4711712
Alignment:
Q  57 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataagtttcattcccaacaacacaaaccaattgaatcctagttatgcttacattaac 156  Q
    ||||||||||| ||| |||||||||||||| |||||||||| ||||| ||||||||| ||||||| ||| || |  ||||||  |||||||| |||||||    
T  4711590 caaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaac 4711689  T
Q  157 ggaatcgaagttgtgtctatgcc 179  Q
    ||||||||| |||||||||||||    
T  4711690 ggaatcgaaattgtgtctatgcc 4711712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 57 - 179
Target Start/End: Original strand, 4845530 - 4845652
Alignment:
Q  57 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataagtttcattcccaacaacacaaaccaattgaatcctagttatgcttacattaac 156  Q
    ||||||||||| ||| || ||||||||||| | |||||||||||||| |||| |||| ||||||| |||| |||||||||||  |||||||| | |||||    
T  4845530 caaagaatattgcattcagatcaaaccaaatgggaagctaaacataactttctttccgaacaacataaacgaattgaatcctttttatgctttcgttaac 4845629  T
Q  157 ggaatcgaagttgtgtctatgcc 179  Q
    ||||||||||||||||| |||||    
T  4845630 ggaatcgaagttgtgtcgatgcc 4845652  T

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Target: chr7; HSP #7
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 57 - 179
Target Start/End: Complemental strand, 4637434 - 4637312
Alignment:
Q  57 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataagtttcattcccaacaacacaaaccaattgaatcctagttatgcttacattaac 156  Q
    ||||||||||| ||| |||||||||||||| || ||| ||||||||| ||||||||| |||| || ||||||||  |||||| |||||||||  ||||||    
T  4637434 caaagaatattgcatacaaatcaaaccaaatgaaaagttaaacataactttcattcctaacagcataaaccaatcaaatccttgttatgcttttattaac 4637335  T
Q  157 ggaatcgaagttgtgtctatgcc 179  Q
    || |||||||||||||| |||||    
T  4637334 gggatcgaagttgtgtcaatgcc 4637312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 57 - 179
Target Start/End: Original strand, 4696708 - 4696830
Alignment:
Q  57 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataagtttcattcccaacaacacaaaccaattgaatcctagttatgcttacattaac 156  Q
    ||||||||||| ||| |||| ||||||||| |||||| ||||||||| ||||||||||| ||||| |||||| |  ||||||  |||||||| |||||||    
T  4696708 caaagaatattgcattcaaaccaaaccaaatgagaagttaaacataactttcattcccagcaacataaaccagtcaaatccttattatgctttcattaac 4696807  T
Q  157 ggaatcgaagttgtgtctatgcc 179  Q
    ||||| ||||||||||| |||||    
T  4696808 ggaatagaagttgtgtcaatgcc 4696830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 57 - 179
Target Start/End: Complemental strand, 4864502 - 4864377
Alignment:
Q  57 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataagtttcattcc---caacaacacaaaccaattgaatcctagttatgcttacatt 153  Q
    ||||||||||| ||| ||||||||| |||| |||||||||||||||| |||||||||   ||| || | ||| ||||  ||||||  |||||| | ||||    
T  4864502 caaagaatattgcattcaaatcaaatcaaatgagaagctaaacataactttcattccggccaataatataaatcaatcaaatccttattatgccttcatt 4864403  T
Q  154 aacggaatcgaagttgtgtctatgcc 179  Q
    || ||||| ||||| |||||||||||    
T  4864402 aatggaatagaagtcgtgtctatgcc 4864377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 57 - 179
Target Start/End: Complemental strand, 4673280 - 4673158
Alignment:
Q  57 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataagtttcattcccaacaacacaaaccaattgaatcctagttatgcttacattaac 156  Q
    |||||||| ||  ||||||||||| || || |||||||||||||||| ||||||||| | || ||  ||| |||  |||  ||  ||||||| |||||||    
T  4673280 caaagaattttgtatccaaatcaagcccaatgagaagctaaacataaatttcattccaagcatcatgaacaaatcaaatgttaaatatgctttcattaac 4673181  T
Q  157 ggaatcgaagttgtgtctatgcc 179  Q
    ||||||||| ||||||| |||||    
T  4673180 ggaatcgaaattgtgtcaatgcc 4673158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 57 - 126
Target Start/End: Complemental strand, 4631507 - 4631438
Alignment:
Q  57 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataagtttcattcccaacaacacaaac 126  Q
    ||||||||||| ||| |||||    ||||| |||||||||||||||| |||||||||||| || ||||||    
T  4631507 caaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaac 4631438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 179
Target Start/End: Complemental strand, 4667515 - 4667396
Alignment:
Q  57 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataagtttcattcccaacaacacaaaccaattgaatcctagttatgcttacattaac 156  Q
    ||||||||||| |||||| | ||||| |   ||||| ||| || ||| |||||||||||| |||||||||||||| ||| |   || ||||| ||| |||    
T  4667515 caaagaatattgcatccataccaaacaaggggagaaactagacgtaactttcattcccaaaaacacaaaccaattaaatgc---ttttgctttcatcaac 4667419  T
Q  157 ggaatcgaagttgtgtctatgcc 179  Q
    ||||| ||  |||||||||||||    
T  4667418 ggaattgagattgtgtctatgcc 4667396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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