View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4522_high_4 (Length: 342)
Name: NF4522_high_4
Description: NF4522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4522_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 144 - 340
Target Start/End: Complemental strand, 4134115 - 4133920
Alignment:
| Q |
144 |
gtgcctatatataactttctcaatttttccctcatcaatacaataaaatttataagtttctctcatctcctaggtgccatattatttattaaagccaaag |
243 |
Q |
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| T |
4134115 |
gtgcctatatataactttctcaatttttccctcatcaatacaataaaatttata-gtttctctcatctcctaggtgccatattatttattaaagccaaag |
4134017 |
T |
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| Q |
244 |
ggcttacaccagaacaccaaggcataacacaaacaccacgagaataaacagaggaaaaacaaacactacaaggagaatgtatattttaacataagag |
340 |
Q |
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| T |
4134016 |
ggcttacaccagaacaccaaggcataacacaaacaccacgagaataaacaaaggaaaaacaaacactacaaagagagtgtatattttaacataagag |
4133920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 4152611 - 4152463
Alignment:
| Q |
1 |
ttccgggaaatgaactggcttcttccattcattcactctacatagggttcttcaataagtcggtcattgacaaatgaataatcaaaagctttaannnnnn |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4152611 |
ttccgggaaatgaactggcttctttcattcattcactctagatagggttcttcaataagtcggtcattgacaaatgaataatcagaagctttaatttttt |
4152512 |
T |
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| Q |
101 |
nnagtgccttagaggaaaactataaatttgttcacgttccttggtgcct |
149 |
Q |
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| T |
4152511 |
ttagtgacttagaggaaaactataaatttgttcacgttccttggtgcct |
4152463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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