View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4522_high_7 (Length: 246)
Name: NF4522_high_7
Description: NF4522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4522_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 52011405 - 52011632
Alignment:
| Q |
1 |
ccattccatcagcatggttagcaagaattttaagagacatttcttgcaacgaaggaaccctaaacctttccctcaccaaatcttctccgtttcttttcgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52011405 |
ccattccatcagcatggttagcaagaattttaagagacatttcttgcaacgaaggaaccctaaacctttccctcaccaaatcttctccgtttcttttcgg |
52011504 |
T |
|
| Q |
101 |
aacccaaataaaggattccttaacaaccccttttttcttgcttttcgcaattcgttcctgaatagctttgattgcttcagagaaaggtgttggagaagca |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52011505 |
aacccaaataaaggattccttaacaaccccttttttcttgcttttcgcaattcgttcctgaatagctttgattgcttcagagaaaggtgttggagaagca |
52011604 |
T |
|
| Q |
201 |
tcatcaacatcaacttcatgttccacat |
228 |
Q |
| |
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|||||||||||||||||||||||||||| |
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|
| T |
52011605 |
tcatcaacatcaacttcatgttccacat |
52011632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 208
Target Start/End: Original strand, 52001544 - 52001747
Alignment:
| Q |
5 |
tccatcagcatggttagcaagaattttaagagacatttcttgcaacgaaggaaccctaaacctttccctcaccaaatcttctccgtttcttttcggaacc |
104 |
Q |
| |
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||||||| |||| || |||||||||||||||||||||||| ||| |||||||| | || ||| ||||||| |||||||| || || ||| | |||| |
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| T |
52001544 |
tccatcaacatgattggcaagaattttaagagacatttctagcagtgaaggaacacataatcttcccctcacaaaatcttcaccattcagttttgaaacc |
52001643 |
T |
|
| Q |
105 |
caaataaaggattccttaacaaccccttttttcttgcttttcgcaattcgttcctgaatagctttgattgcttcagagaaaggtgttggagaagcatcat |
204 |
Q |
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||| ||| |||||| | |||| ||| |||| |||||||| | ||||||||| ||||||||||||| ||||| ||||||||| ||||||||| |||||| |
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| T |
52001644 |
caagtaagggattcatcgacaaacccccttttgttgcttttagtaattcgttcttgaatagctttgactgctttagagaaaggagttggagaatcatcat |
52001743 |
T |
|
| Q |
205 |
caac |
208 |
Q |
| |
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|||| |
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|
| T |
52001744 |
caac |
52001747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 206
Target Start/End: Complemental strand, 51988087 - 51987888
Alignment:
| Q |
7 |
catcagcatggttagcaagaattttaagagacatttcttgcaacgaaggaaccctaaacctttccctcaccaaatcttctccgtttcttttcggaaccca |
106 |
Q |
| |
|
||||||||||||| |||||||| ||||| ||| ||||||||| |||||||| ||||| ||| | | ||||||||||| | || ||| | | ||| |
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| T |
51988087 |
catcagcatggttcgcaagaatgttaaggcacaattcttgcaatgaaggaacactaaagcttctcttttccaaatcttcttcattgaattttgaatgcca |
51987988 |
T |
|
| Q |
107 |
aataaaggattccttaacaaccccttttttcttgcttttcgcaattcgttcctgaatagctttgattgcttcagagaaaggtgttggagaagcatcatca |
206 |
Q |
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||||| ||||| | ||||| |||||||||| ||||||| || |||| ||| ||||||||||| ||||||| ||||||||||||||||||| |||||||| |
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|
| T |
51987987 |
aataagagattcatcaacaagcccttttttcatgcttttggcgattctttcttgaatagctttaattgctttagagaaaggtgttggagaaccatcatca |
51987888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 207
Target Start/End: Original strand, 11749218 - 11749420
Alignment:
| Q |
5 |
tccatcagcatggttagcaagaattttaagagacatttcttgcaacgaaggaaccctaaacctttccctcaccaaatcttctccgtttcttttcggaacc |
104 |
Q |
| |
|
||||||| |||| |||||||| ||||| ||||| ||||| ||| |||||||| | ||||||| |||||||||||||||| || |||||||||||| |
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|
| T |
11749218 |
tccatcaacatgattagcaagggctttaaaagacaattcttccaatgaaggaacacaaaaccttctattcaccaaatcttctccattccttttcggaacc |
11749317 |
T |
|
| Q |
105 |
caaataaaggattccttaacaaccccttttttcttgcttttcgcaattcgttcctgaatagctttgattgcttcagagaaaggtgttggagaagcatcat |
204 |
Q |
| |
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||||||| |||||| | ||||| ||| |||||||| |||| ||||||||||| |||||||||||||||| ||| |||||||| ||||||||| |||||| |
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|
| T |
11749318 |
caaataagggattcatcaacaaaccccattttcttggttttggcaattcgttcttgaatagctttgattgtttcggagaaaggagttggagaaccatcat |
11749417 |
T |
|
| Q |
205 |
caa |
207 |
Q |
| |
|
||| |
|
|
| T |
11749418 |
caa |
11749420 |
T |
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