View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4522_low_11 (Length: 314)

Name: NF4522_low_11
Description: NF4522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4522_low_11
NF4522_low_11
[»] chr5 (1 HSPs)
chr5 (9-308)||(39076154-39076443)


Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 9 - 308
Target Start/End: Original strand, 39076154 - 39076443
Alignment:
Q  9 acatcatcaccatcattttcaatttcatcatttatctaagaccaattgcagccgcagnnnnnnnnnnnnnnnnnnngcatttatgaaaaagtaaaacaag 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   ||||||||||||||||||||||||    
T  39076154 acatcatcaccatcattttcaatttcatcatttatctaagaccaattgcagccgcagttttttttt----------gcatttatgaaaaagtaaaacaag 39076243  T
Q  109 tgcaggttgaacaaaaagctttttcgattgcacgaacaaatatgaatttgtcttaacaagctaaatgcatggacattaattgcttaactatataagtctt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39076244 tgcaggttgaacaaaaagctttttcgattgcacgaacaaatatgaatttgtcttaacaagctaaatgcatggacattaattgcttaactatataagtctt 39076343  T
Q  209 cattcagtgttttcttcgcataattgttgagctgcatatacttagtcaattaaatacaaattagtgcaagtaaatgtttagacaatgcaatgatgatgtc 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39076344 cattcagtgttttcttcgcataattgttgagctgcatatacttagtcaattaaaaacaaattagtgcaagtaaatgtttagacaatgcaatgatgatgtc 39076443  T

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