View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4522_low_12 (Length: 284)

Name: NF4522_low_12
Description: NF4522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4522_low_12
NF4522_low_12
[»] chr6 (13 HSPs)
chr6 (23-247)||(26890731-26890955)
chr6 (28-219)||(27713769-27713960)
chr6 (29-174)||(26853949-26854094)
chr6 (27-130)||(26631744-26631847)
chr6 (27-130)||(26737719-26737822)
chr6 (27-162)||(27422277-27422412)
chr6 (27-141)||(27651942-27652055)
chr6 (28-120)||(26966390-26966482)
chr6 (27-115)||(31289542-31289630)
chr6 (159-213)||(27651844-27651898)
chr6 (156-229)||(26641217-26641290)
chr6 (156-229)||(26747183-26747256)
chr6 (156-225)||(26828715-26828784)
[»] scaffold0349 (1 HSPs)
scaffold0349 (28-219)||(17984-18175)
[»] chr8 (1 HSPs)
chr8 (27-219)||(29269635-29269827)
[»] scaffold0003 (1 HSPs)
scaffold0003 (27-162)||(64951-65086)
[»] chr4 (4 HSPs)
chr4 (148-230)||(18682705-18682787)
chr4 (148-198)||(18650319-18650369)
chr4 (148-197)||(18718539-18718588)
chr4 (182-226)||(18692037-18692081)
[»] chr2 (1 HSPs)
chr2 (148-204)||(946412-946469)


Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 23 - 247
Target Start/End: Original strand, 26890731 - 26890955
Alignment:
Q  23 aggtcagaacttgtgtcacagcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctgaga 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26890731 aggtcagaacttgtgtcacagcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctgaga 26890830  T
Q  123 cagaacttatgtagcagcagcaaaacatgtatgtatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttcatca 222  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26890831 cagaacttatgtagcagcagcaacacatgtatgtatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttcatca 26890930  T
Q  223 caatctctttctggtatgatgatgt 247  Q
    |||||||||||||||||||| ||||    
T  26890931 caatctctttctggtatgataatgt 26890955  T

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Target: chr6; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 28 - 219
Target Start/End: Complemental strand, 27713960 - 27713769
Alignment:
Q  28 agaacttgtgtcacagcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctgagacagaa 127  Q
    |||||||||||  |||||||||||| | ||| |||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  27713960 agaacttgtgtagcagcaacaacactgtatgtctcttgtgattattaagttattcttgtgtaaaaacacttctctgccaaatcagttttctgagacagaa 27713861  T
Q  128 cttatgtagcagcagcaaaacatgtatgtatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttca 219  Q
    ||| |||||||||| ||| | ||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||| |||||||| ||||    
T  27713860 cttgtgtagcagcaacaacatatgtatgtatgattaatttgcttttaataatacaagagtatgtacatattgtgataccgacagatgtttca 27713769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 29 - 174
Target Start/End: Original strand, 26853949 - 26854094
Alignment:
Q  29 gaacttgtgtcacagcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctgagacagaac 128  Q
    ||||||||||  |||||||||||| | ||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||    
T  26853949 gaacttgtgtagcagcaacaacactgtatggctcttgtgattaataagttattcttgtgtaaaaacaattttctgccaagtcagttttctgagacagaac 26854048  T
Q  129 ttatgtagcagcagcaaaacatgtatgtatgattaatttgctttta 174  Q
    ||  |||| ||||| || |||| |||||||||||||||| ||||||    
T  26854049 ttgcgtaggagcagaaacacatatatgtatgattaatttcctttta 26854094  T

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Target: chr6; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 27 - 130
Target Start/End: Original strand, 26631744 - 26631847
Alignment:
Q  27 cagaacttgtgtcacagcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctgagacaga 126  Q
    ||||||||||||  | |||||||||  | ||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||| |||||||||||||||    
T  26631744 cagaacttgtgtagctgcaacaacattgtatggctcttgtgattaataaggtattcttgtgtaaaaacacttttctcccaaatctgttttctgagacaga 26631843  T
Q  127 actt 130  Q
    ||||    
T  26631844 actt 26631847  T

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Target: chr6; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 27 - 130
Target Start/End: Original strand, 26737719 - 26737822
Alignment:
Q  27 cagaacttgtgtcacagcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctgagacaga 126  Q
    ||||||||||||  | |||||||||  | ||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||| |||||||||||||||    
T  26737719 cagaacttgtgtagctgcaacaacattgtatggctcttgtgattaataaggtattcttgtgtaaaaacacttttctcccaaatctgttttctgagacaga 26737818  T
Q  127 actt 130  Q
    ||||    
T  26737819 actt 26737822  T

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Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 162
Target Start/End: Complemental strand, 27422412 - 27422277
Alignment:
Q  27 cagaacttgtgtcacagcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctgagacaga 126  Q
    ||||||||| ||  ||| |||||||| | ||||||||||| ||||||||| ||||||| ||||||| || ||||||||||||||| |||||||  |||||    
T  27422412 cagaacttgagtagcagaaacaacactgtatggctcttgtaattaataaggtattcttgtgtaaaagcagttttctgccaaatcatttttctgcaacaga 27422313  T
Q  127 acttatgtagcagcagcaaaacatgtatgtatgatt 162  Q
    |||| ||| |||||| ||| | ||||||||||||||    
T  27422312 acttgtgtcgcagcaacaacaaatgtatgtatgatt 27422277  T

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Target: chr6; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 27 - 141
Target Start/End: Complemental strand, 27652055 - 27651942
Alignment:
Q  27 cagaacttgtgtcacagcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctgagacaga 126  Q
    ||||||||| ||  |||||||||||| | ||  || |||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||    
T  27652055 cagaacttgcgtagcagcaacaacactgtataacttttgtgattaataagttattcatgtgtaaaaacacttttctgccaaatcagtttt-tgagacaga 27651957  T
Q  127 acttatgtagcagca 141  Q
    |||| | ||||||||    
T  27651956 acttgtttagcagca 27651942  T

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Target: chr6; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 28 - 120
Target Start/End: Original strand, 26966390 - 26966482
Alignment:
Q  28 agaacttgtgtcacagcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctga 120  Q
    |||||||||||  ||||||||| || | |||||||||| |||||||||| ||||||| |||||||||||||| ||||||||||||||||||||    
T  26966390 agaacttgtgtagcagcaacaaaactgtatggctcttgagattaataaggtattcttgtgtaaaaacactttgctgccaaatcagttttctga 26966482  T

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Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 31289542 - 31289630
Alignment:
Q  27 cagaacttgtgtcacagcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttt 115  Q
    |||||| |||||  ||| |||||||| | ||||||||||||||||||||| ||||||| ||||||||||||| |||||||  |||||||    
T  31289542 cagaacctgtgtagcagaaacaacactgtatggctcttgtgattaataaggtattcttgtgtaaaaacacttctctgccagttcagttt 31289630  T

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Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 27651898 - 27651844
Alignment:
Q  159 gattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagat 213  Q
    |||||||||||||||| || ||||||||||||||||||||| |||||||||||||    
T  27651898 gattaatttgcttttacgaatacaagagtttgtacatattgcgatactgacagat 27651844  T

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Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 156 - 229
Target Start/End: Original strand, 26641217 - 26641290
Alignment:
Q  156 tatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttcatcacaatctc 229  Q
    ||||||||| ||| ||||| || |||||| |||| |||||| ||||||| ||||||||||||||||||||||||    
T  26641217 tatgattaaattgattttaggaatacaagtgtttctacatactgtgatattgacagatggttcatcacaatctc 26641290  T

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Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 156 - 229
Target Start/End: Original strand, 26747183 - 26747256
Alignment:
Q  156 tatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttcatcacaatctc 229  Q
    ||||||||| ||| ||||| || |||||| |||| |||||| ||||||| ||||||||||||||||||||||||    
T  26747183 tatgattaaattgattttaggaatacaagtgtttctacatactgtgatattgacagatggttcatcacaatctc 26747256  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 225
Target Start/End: Original strand, 26828715 - 26828784
Alignment:
Q  156 tatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttcatcacaa 225  Q
    ||||||||| |||| |||| || |||||| ||||||||||| ||||||| ||| |||| |||| ||||||    
T  26828715 tatgattaaattgcctttaggaatacaagtgtttgtacatactgtgatattgaaagatagttcctcacaa 26828784  T

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Target: scaffold0349 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 28 - 219
Target Start/End: Original strand, 17984 - 18175
Alignment:
Q  28 agaacttgtgtcacagcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctgagacagaa 127  Q
    |||||||||||  |||||||||||| | ||| |||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  17984 agaacttgtgtagcagcaacaacactgtatgtctcttgtgattattaagttattcttgtgtaaaaacacttctctgccaaatcagttttctgagacagaa 18083  T
Q  128 cttatgtagcagcagcaaaacatgtatgtatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttca 219  Q
    ||| |||||||||| ||| | ||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||| |||||||| ||||    
T  18084 cttgtgtagcagcaacaacatatgtatgtatgattaatttgcttttaataatacaagagtatgtacatattgtgataccgacagatgtttca 18175  T

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Target: chr8 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 27 - 219
Target Start/End: Complemental strand, 29269827 - 29269635
Alignment:
Q  27 cagaacttgtgtcacagcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctgagacaga 126  Q
    ||||||||||||  |||||||||||| | |||||||||||||||| |||||||||||| ||||||||||||| |||||||||||| ||||| ||||||||    
T  29269827 cagaacttgtgtagcagcaacaacactgtatggctcttgtgattattaagttattcttgtgtaaaaacacttctctgccaaatcacttttcagagacaga 29269728  T
Q  127 acttatgtagcagcagcaaaacatgtatgtatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttca 219  Q
    |||| |||||||||| ||| | ||||||| ||||||||||||||||||| | ||||||||| |||| |||||||||||| ||| |||| ||||    
T  29269727 acttgtgtagcagcaacaacatatgtatgcatgattaatttgcttttaataatacaagagtatgtagatattgtgataccgactgatgtttca 29269635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 162
Target Start/End: Original strand, 64951 - 65086
Alignment:
Q  27 cagaacttgtgtcacagcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctgagacaga 126  Q
    ||||||||| ||  ||| |||||||| | ||||||||||| ||||||||| ||||||| ||||||| || ||||||||||||||| |||||||  |||||    
T  64951 cagaacttgagtagcagaaacaacactgtatggctcttgtaattaataaggtattcttgtgtaaaagcagttttctgccaaatcatttttctgcaacaga 65050  T
Q  127 acttatgtagcagcagcaaaacatgtatgtatgatt 162  Q
    |||| ||| |||||| ||| | ||||||||||||||    
T  65051 acttgtgtcgcagcaacaacaaatgtatgtatgatt 65086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 148 - 230
Target Start/End: Complemental strand, 18682787 - 18682705
Alignment:
Q  148 catgtatgtatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttcatcacaatctct 230  Q
    ||||||||||||||||| |||||||||||| ||||||||| |||||||||| | |||| || ||||||||| |||||||||||    
T  18682787 catgtatgtatgattaaattgcttttaagaatacaagagtatgtacatattttcataccgatagatggttcgtcacaatctct 18682705  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 148 - 198
Target Start/End: Complemental strand, 18650369 - 18650319
Alignment:
Q  148 catgtatgtatgattaatttgcttttaagagtacaagagtttgtacatatt 198  Q
    ||||||||||||||||| |||||||||||| ||||||||| ||||||||||    
T  18650369 catgtatgtatgattaaattgcttttaagaatacaagagtatgtacatatt 18650319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 18718588 - 18718539
Alignment:
Q  148 catgtatgtatgattaatttgcttttaagagtacaagagtttgtacatat 197  Q
    ||||||||||||||||| |||||||||||| ||||||||| |||||||||    
T  18718588 catgtatgtatgattaaattgcttttaagaatacaagagtatgtacatat 18718539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 18692081 - 18692037
Alignment:
Q  182 aagagtttgtacatattgtgatactgacagatggttcatcacaat 226  Q
    ||||||||||||||||| | |||| ||||||||||||||||||||    
T  18692081 aagagtttgtacatattttcataccgacagatggttcatcacaat 18692037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 946469 - 946412
Alignment:
Q  148 catgtatgtatgattaatttgcttttaagag-tacaagagtttgtacatattgtgata 204  Q
    ||||||||| ||||||  ||||||||||||| | |||||||||||||||||| |||||    
T  946469 catgtatgtgtgattagattgcttttaagagatgcaagagtttgtacatattttgata 946412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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