View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4522_low_15 (Length: 237)
Name: NF4522_low_15
Description: NF4522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4522_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 23 - 178
Target Start/End: Complemental strand, 38005283 - 38005128
Alignment:
| Q |
23 |
aggtgtttgtttgctagggcaatgcatgatgttaaccctaaagctattttacctatgaggagcttgttgaggctttctaaaaatgttaatgttgatgatt |
122 |
Q |
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| T |
38005283 |
aggtgtttgtttgctagggcaatgcatgatgttaaccctaaagctattttacctatgaggagcttgttgaggctttctaaaaatgttgatgttgatgatt |
38005184 |
T |
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| Q |
123 |
ttgatccaactgaaccacctaagactgatgttatcactctttagtactttatggtg |
178 |
Q |
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| T |
38005183 |
ttgatccaactgaaccacctaagactgatgttatcactctttagtactttatggtg |
38005128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 23 - 178
Target Start/End: Original strand, 26462524 - 26462679
Alignment:
| Q |
23 |
aggtgtttgtttgctagggcaatgcatgatgttaaccctaaagctattttacctatgaggagcttgttgaggctttctaaaaatgttaatgttgatgatt |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
26462524 |
aggtgtttgtttgctagggcaatgcatgatgttaaccctaaagctattttacctatgaggagcttgttgagactttctaaaaatgttgttgttgatgatt |
26462623 |
T |
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| Q |
123 |
ttgatccaactgaaccacctaagactgatgttatcactctttagtactttatggtg |
178 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26462624 |
ttgatccaactgaaccacccaagactgatgttatcactctttagtactttatggtg |
26462679 |
T |
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