View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4522_low_2 (Length: 474)

Name: NF4522_low_2
Description: NF4522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4522_low_2
NF4522_low_2
[»] chr2 (1 HSPs)
chr2 (12-459)||(34387134-34387582)
[»] chr7 (2 HSPs)
chr7 (46-459)||(7313594-7314004)
chr7 (149-193)||(47508262-47508306)
[»] chr4 (1 HSPs)
chr4 (44-459)||(31182992-31183405)
[»] chr8 (2 HSPs)
chr8 (15-459)||(39581354-39581794)
chr8 (200-240)||(24305951-24305991)
[»] chr1 (3 HSPs)
chr1 (94-459)||(52143491-52143857)
chr1 (219-459)||(24038896-24039135)
chr1 (44-410)||(29182902-29183264)
[»] chr3 (2 HSPs)
chr3 (200-234)||(10301538-10301572)
chr3 (200-234)||(10339710-10339744)


Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 12 - 459
Target Start/End: Original strand, 34387134 - 34387582
Alignment:
Q  12 catcatcatcagcttctatctttcannnnnnn--cctttgttcttgctctttcataaacccaaatcacacaaaaactcacttctccttcttctacctcct 109  Q
    |||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34387134 catcatcatcagcttctatctttcatttttttttcctttgttcttgctctttcataaacccaaatcacacaaaaactcacttctccttcttctacctcct 34387233  T
Q  110 actcacatcaactattttatattctatgatnnnnnnnnnccccaaattccctcttcatcttctcaatcatcatcacacataacaaccagcattccttcac 209  Q
    ||||||||||||||||||||||||||||||         |   || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  34387234 actcacatcaactattttatattctatgataaaaaaaaccttaaatttctctcttcatcttctcaatcgtcatcacacataacaaccagcattccttcac 34387333  T
Q  210 tcttcttctctcaacacaacacaaaaataccttcttcnnnnnnngtgaaaatacacacaaataacacaacacaaggagccatagatctgaaacacgttta 309  Q
    |||||||||||||||||||||||||||||||||||||       ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34387334 tcttcttctctcaacacaacacaaaaataccttcttctttttttgtgaaaatacacataaataacacaacacaaggagccatagatctgaaacacgttta 34387433  T
Q  310 gcatattggtttgacaaattaaataaaaatagaagcatggtttctgatttcaggtcaaacactcgttgtggctgcggtaagcaaacgttaaacaaaaatt 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||| ||  |||| |||| ||||||||||||||||||| ||||||    
T  34387434 gcatattggtttgacaaattaaataaaaatagaagcatggtttctgatttatgctcaaatacctgttggggctacggtaagcaaacgttaaac-aaaatt 34387532  T
Q  410 ttccagcatggtggttatgttttgcggtgtggttatcaccggagcaagct 459  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  34387533 ttccagcatggtggtgatgttttccggtgtggttatcaccggagcaagct 34387582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 46 - 459
Target Start/End: Complemental strand, 7314004 - 7313594
Alignment:
Q  46 tttgttcttgctctttcataaacccaaatcacacaaaaactcacttctccttcttctacctcctactcacatcaactattttatattctatgatnnnnnn 145  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||          
T  7314004 tttgttcttgctctttcataaatccaaatcacacaaaaactcgcttctccttcttctacctcctactcacatcaactattttatatcctatgatgaaaaa 7313905  T
Q  146 nnnccccaaattccctcttcatcttctcaatcatcatcacacataacaaccagcattccttcactcttcttctctcaacacaacacaaaaataccttctt 245  Q
        ||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||    
T  7313904 aa--cccaaattccctcttcatcttctcaatcatcatcacacataacagtcaacattccttcactcttcttctctcaacacaacacaaaaataccttctt 7313807  T
Q  246 cnnnnnnngtgaaaatacacacaaataacacaacacaaggagccatagatctgaaacacgtttagcatattggtttgacaaattaaataaaaatagaagc 345  Q
    |       ||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  7313806 ctttttttgtgaaaatacacataaataacactacacaaggagccatagatctgaaacgcgtttagcatattggtttgacaaattaaataaaaacagaagc 7313707  T
Q  346 atggtttctgatttcaggtcaaacactcgttgtggctgcggtaagcaaacgttaaacaaaaattttccagcatggtggttatgttttgcggtgtggttat 445  Q
    ||||||| ||||||| | |||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||| ||||||||||||    
T  7313706 atggtttttgatttctgctcaaacacccgttgtggctgcggtaagcaaacgttaaac-agaattttccagcatggtggtgatgttttccggtgtggttat 7313608  T
Q  446 caccggagcaagct 459  Q
    ||||||||||||||    
T  7313607 caccggagcaagct 7313594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 149 - 193
Target Start/End: Complemental strand, 47508306 - 47508262
Alignment:
Q  149 ccccaaattccctcttcatcttctcaatcatcatcacacataaca 193  Q
    ||||||||||| |||| ||||| ||||||||||||||||| ||||    
T  47508306 ccccaaattccatcttaatcttatcaatcatcatcacacaaaaca 47508262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 44 - 459
Target Start/End: Original strand, 31182992 - 31183405
Alignment:
Q  44 cctttgttcttgctctttcataaacccaaatcacacaaaaactcacttctccttcttctacctcctactcacatcaactattttatattctatgatnnnn 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||        
T  31182992 cctttgttcttgctctttcataaacccaaatcacacaaaaactcacttctccttcttctacctcctactcacatcaactatttcatattctatgataaaa 31183091  T
Q  144 nnnnnccccaaattccctcttcatcttctcaatcatcatcacacataacaaccagcattccttcactcttcttctctcaacacaacacaaaaataccttc 243  Q
         ||| || ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31183092 aaaatcccgaa-ttccctcttcatcttctcaatcatcatcacacataacagacagcattccttcactcttcttctctcaacacaacacaaaaataccttc 31183190  T
Q  244 ttcnnnnnnngtgaaaatacacacaaataacacaacacaaggagccatagatctgaaacacgtttagcatattggtttgacaaattaaataaaaatagaa 343  Q
    |||       ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  31183191 ttctttttttgtgaaaatacacataaataacacaacacaaggagtcatagatctgaaacacgtttagcatatttgttggacaaattaaataaaaacagaa 31183290  T
Q  344 gcatggtttctgatttcaggtcaaacactcgttgtggctgcggtaagcaaacgttaaacaaaaattttccagcatggtggttatgttttgcggtgtggtt 443  Q
    ||||||||||||||||| | |||||||| |||||||| ||||||||||||||||||||| | ||||||||||||||||||| ||||||| | ||| ||||    
T  31183291 gcatggtttctgatttctgctcaaacacccgttgtggttgcggtaagcaaacgttaaac-agaattttccagcatggtggtgatgttttcctgtgcggtt 31183389  T
Q  444 atcaccggagcaagct 459  Q
    ||| ||||||||||||    
T  31183390 atcgccggagcaagct 31183405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 15 - 459
Target Start/End: Complemental strand, 39581794 - 39581354
Alignment:
Q  15 catcatcagcttctatctttcannnnnnncctttgttcttgctctttcataaacccaaatcacacaaaaactcacttctccttcttctacctcctactca 114  Q
    ||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39581794 catcatcagcttctatctttcatttttttcctttgttcttgctctttcataaacccaaatcacacaaaaactcacttctccttcttctacctcttactca 39581695  T
Q  115 catcaactattttatattctatgatnnnnnnnnnccccaaattccctcttcatcttctcaatcatcatcacacataacaaccagcattccttcactcttc 214  Q
    |||||||||||||||||||||||||           | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39581694 catcaactattttatattctatgataaaaaatt---ctaaattccctcttcatcttctcaatcatcatcacacataacagccagcattccttcactcttc 39581598  T
Q  215 ttctctcaacacaacacaaaaataccttcttcnnnnnnngtgaaaatacacacaaataacacaacacaaggagccatagatctgaaacacgtttagcata 314  Q
    ||||||||||||||||||||||||||||||||       ||||||||||||| |||||||||||||||||||| ||| |||||||||| |||||||||||    
T  39581597 ttctctcaacacaacacaaaaataccttcttctttttttgtgaaaatacacataaataacacaacacaaggagtcatggatctgaaacgcgtttagcata 39581498  T
Q  315 ttggtttgacaaattaaataaaaatagaagcatggtttctgatttcaggtcaaacactcgttgtggctgcggtaagcaaacgttaaacaaaaattttcca 414  Q
    || ||||||||||||||||||||| | ||||||||||||||||||  | |||||||  |||||||| |||||||||||||| |||||| | |||||||||    
T  39581497 tttgtttgacaaattaaataaaaacataagcatggtttctgatttatgctcaaacatccgttgtggttgcggtaagcaaacattaaac-ataattttcca 39581399  T
Q  415 gcatggtggttatgttttgcggtgtggttatcaccggagcaagct 459  Q
    |||||||||| ||||||| | ||| ||||||| ||||||||||||    
T  39581398 gcatggtggtgatgttttccagtgcggttatcgccggagcaagct 39581354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 24305991 - 24305951
Alignment:
Q  200 attccttcactcttcttctctcaacacaacacaaaaatacc 240  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  24305991 attccttcactcttcttctctcaacacaacacaaaaatacc 24305951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 94 - 459
Target Start/End: Original strand, 52143491 - 52143857
Alignment:
Q  94 ccttcttctacctcctactcacatcaactattttatattctatgatnnnnnnnnnccccaaattccctcttcatcttctcaatcatcatcacacataaca 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||| |||||||||||||    
T  52143491 ccttcttctacctcctactcacatcaactattttatattctatgataaaaaa---ccccaaattccctcttcatcttctcaatcataatcacacataaca 52143587  T
Q  194 accagcattccttcactcttcttctctcaacacaacacaaaaataccttcttcnnnnnnn----------gtgaaaatacacacaaataacacaacacaa 283  Q
    || |||||||||||||||||||||||||||||||||||||||||||||| ||                  ||||||||||||| |||||| |||||||||    
T  52143588 actagcattccttcactcttcttctctcaacacaacacaaaaatacctttttttttttttttttttttttgtgaaaatacacataaataaaacaacacaa 52143687  T
Q  284 ggagccatagatctgaaacacgtttagcatattggtttgacaaattaaataaaaatagaagcatggtttctgatttcaggtcaaacactcgttgtggctg 383  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  | |||||||| |||||||||||    
T  52143688 ggagccatagatctgaaacgcgtttagcatattggtttgacaaattaaataaaaacagaagcatggtttctgatttatgctcaaacacccgttgtggctg 52143787  T
Q  384 cggtaagcaaacgttaaacaaaaattttccagcatggtggttatgttttgcggtgtggttatcaccggagcaagct 459  Q
    ||||     |||||||| | | ||||||| ||||||||||  ||||||| ||||||||||||||||||||||||||    
T  52143788 cggt-----aacgttaatc-agaattttctagcatggtggcgatgttttccggtgtggttatcaccggagcaagct 52143857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 219 - 459
Target Start/End: Complemental strand, 24039135 - 24038896
Alignment:
Q  219 ctcaacacaacacaaaaataccttcttcnnnnnnngtgaaaatacacacaaataacacaacacaaggagccatagatctgaaacacgtttagcatattgg 318  Q
    ||||||||||||||||||||||||||||       | |||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24039135 ctcaacacaacacaaaaataccttcttcttttctagagaaaatacgcataaataacacaacacaaggagccatagatctgaaacccgtttagcatattgg 24039036  T
Q  319 tttgacaaattaaataaaaatagaagcatggtttctgatttcaggtcaaacactcgttgtggctgcggtaagcaaacgttaaacaaaaattttccagcat 418  Q
    |||||||||||||||||||  ||||||||||||||| |||||   ||||||||  ||||||| ||||||||||||||||||||  | |||||||||||||    
T  24039035 tttgacaaattaaataaaaccagaagcatggtttctaatttctactcaaacacctgttgtggttgcggtaagcaaacgttaaa-tagaattttccagcat 24038937  T
Q  419 ggtggttatgttttgcggtgtggttatcaccggagcaagct 459  Q
    | |||| ||||||| ||||||| ||||||| ||||||||||    
T  24038936 gttggtgatgttttccggtgtgcttatcactggagcaagct 24038896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 44 - 410
Target Start/End: Complemental strand, 29183264 - 29182902
Alignment:
Q  44 cctttgttcttgctctttcataaacccaaa-tcacacaaaaactcacttctccttcttctacctcctactcacatc--aactattttatattctatgatn 140  Q
    |||||||||||||||||||||||||||||| |||||  ||||||||||| |||||||||||| |||||||||||||  ||||||||||||||| || ||     
T  29183264 cctttgttcttgctctttcataaacccaaaatcacatcaaaactcacttttccttcttctacatcctactcacatctcaactattttatattccataata 29183165  T
Q  141 nnnnnnnnccccaaattccctcttcatcttctcaatcatcatcacacataacaaccagcattccttcactcttcttctctc-aacacaacacaaaaatac 239  Q
            | | ||||| ||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||    
T  29183164 taaaaaaactc-aaatttcctcttcatcttctcgatcatcatcacacataacaaccataattccttcactcttcttctctctaacacaacacaaaaatac 29183066  T
Q  240 cttcttcnnnnnnngtgaaaatacacacaaataacacaacacaaggagccatagatctgaaacacgtttagcatattggtttgacaaattaaataaaaat 339  Q
      | ||          ||||||||||| ||| ||||||||| ||||||||| | |||||||||  |||||  | ||  |||||||| |||||   ||||     
T  29183065 aat-tttttttttatagaaaatacacagaaacaacacaacataaggagccacatatctgaaacgtgtttaatagatccgtttgacagattaa--gaaaac 29182969  T
Q  340 agaagcatggtttctgatttcaggtcaaacactcgttgtggctgcggtaagcaaacgttaaacaaaaattt 410  Q
    |||||||| |||||||||||  | |||||||| |||| |||||||     || ||||||||||||||||||    
T  29182968 agaagcatagtttctgatttatgctcaaacacgcgttatggctgc----tgctaacgttaaacaaaaattt 29182902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 234
Target Start/End: Complemental strand, 10301572 - 10301538
Alignment:
Q  200 attccttcactcttcttctctcaacacaacacaaa 234  Q
    |||| ||||||||||||||||||||||||||||||    
T  10301572 attctttcactcttcttctctcaacacaacacaaa 10301538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 234
Target Start/End: Complemental strand, 10339744 - 10339710
Alignment:
Q  200 attccttcactcttcttctctcaacacaacacaaa 234  Q
    |||| ||||||||||||||||||||||||||||||    
T  10339744 attctttcactcttcttctctcaacacaacacaaa 10339710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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