View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4522_low_6 (Length: 392)
Name: NF4522_low_6
Description: NF4522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4522_low_6 |
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| [»] scaffold0288 (2 HSPs) |
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Alignment Details
Target: scaffold0288 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 15251 - 14871
Alignment:
| Q |
1 |
tttgtgcgataatcgaactaaaagatgattaagctcatctatcgactttgagattgacatagtcattgagtttgagagatttgtaatgaccaaactaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15251 |
tttgtgcgataatcgaactaaaagatgattaagcgcatctatcgactttgagattgacatagtcattgagtttgagagatttgtaatgaccaaaccaaaa |
15152 |
T |
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| Q |
101 |
agaggatgtggcgtagtcgccgactttaagatatacgtaatgacggaatcaacagtggatttgacacaattactt-tgagnnnnnnnggataacaaaaaa |
199 |
Q |
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|||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||| | | |||| ||||||||||||| |
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| T |
15151 |
agaggatgtggcgtagtcaccgactttaagatataggtaatgacggaatcaactgtggatttgacacaatcaatactgagtttttttggataacaaaaaa |
15052 |
T |
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| Q |
200 |
ggatttagagtagccatggactttaagatgttagcgatgaccaaactaaaagagaatttagcgtggtcaccaatttaaggtctaagtaataatggaataa |
299 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
15051 |
ggatgtagagtagccatcaactttaagatgttagcgatgaccaaactaaaagagaatttagcgtggtcaccaatttaaggtttaagtaataatggaataa |
14952 |
T |
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| Q |
300 |
aaagtagatttttgcaattactattaagt-----atttacacaaataatatgggatttgatcccgtattgcaagtccaaaa |
375 |
Q |
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| T |
14951 |
aaagtagatttttgcaattactattaagtttatgatttacacaaataatatgggatttgatcccgtattgcaagtccaaaa |
14871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 15327 - 15294
Alignment:
| Q |
1 |
tttgtgcgataatcgaactaaaagatgattaagc |
34 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
15327 |
tttgtgcgataatcgaactaaaagatgattaagc |
15294 |
T |
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