View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4522_low_8 (Length: 376)
Name: NF4522_low_8
Description: NF4522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4522_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 20 - 366
Target Start/End: Complemental strand, 15138545 - 15138199
Alignment:
| Q |
20 |
ataggaagatgattcgaacttgactccgtcacggaaactttcaccgttgaaattgaattctaattctgttgtatttgaatccatggtcatgtaattttta |
119 |
Q |
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| T |
15138545 |
ataggaagatgattcgaacttgactccgtcacggaaactttcactgttgaaattgaattctaattctgttgtatttgaatccatggtcatgtaattttta |
15138446 |
T |
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| Q |
120 |
ggtgaattgtaaccttcagatgtatttattccccattttgaccaattttctggtgatggatgcctagccattaaatcttgatcgcccggtacaacgaaat |
219 |
Q |
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| T |
15138445 |
ggtgaattgtaaccttcaggtgtatttattccccattttgaccaattttctggtgatggatgcctagccattaaatcttgatcgcccggtacaacgaaat |
15138346 |
T |
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| Q |
220 |
cgttcgttccacatccatagtaccaatccatggcgaatagtctgtaaatgttagaaacataacaagatcagcatatagaaaatggaatttataattgaaa |
319 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15138345 |
cgttcgttccacatccatagtaccaatccatggtgaatagtctgtaaatgttagaaacataacaagatcagcatatagaaaatggaatttataattgaaa |
15138246 |
T |
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| Q |
320 |
atatgtagagtttgctaactcatagactaaaacacaactatcctatg |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15138245 |
atatgtagagtttgctaactcatagactaaaacacaactatcctatg |
15138199 |
T |
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