View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4523-Insertion-2 (Length: 902)

Name: NF4523-Insertion-2
Description: NF4523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4523-Insertion-2
NF4523-Insertion-2
[»] chr8 (6 HSPs)
chr8 (364-551)||(27056116-27056304)
chr8 (584-774)||(27056336-27056526)
chr8 (773-865)||(27056562-27056649)
chr8 (773-865)||(9642358-9642445)
chr8 (7-46)||(27056070-27056109)
chr8 (797-865)||(29108853-29108916)
[»] chr4 (4 HSPs)
chr4 (774-865)||(10302084-10302170)
chr4 (713-784)||(10302198-10302267)
chr4 (773-824)||(43309519-43309570)
chr4 (772-813)||(32596191-32596232)
[»] chr3 (3 HSPs)
chr3 (773-865)||(30616288-30616375)
chr3 (773-865)||(23546949-23547036)
chr3 (831-865)||(34154408-34154442)
[»] chr1 (2 HSPs)
chr1 (773-862)||(34085233-34085317)
chr1 (773-813)||(5181081-5181121)
[»] chr7 (2 HSPs)
chr7 (711-773)||(5565216-5565277)
chr7 (773-824)||(42908048-42908099)
[»] chr2 (2 HSPs)
chr2 (716-774)||(22900912-22900969)
chr2 (712-781)||(10212517-10212585)
[»] chr5 (1 HSPs)
chr5 (744-789)||(27302714-27302759)


Alignment Details
Target: chr8 (Bit Score: 165; Significance: 9e-88; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 9e-88
Query Start/End: Original strand, 364 - 551
Target Start/End: Original strand, 27056116 - 27056304
Alignment:
Q  364 gcctcaacatgtcggatacc-tttgtagcgtttgtcaatttccactctctaaatttgttgtctctcccaatcttgccaagctcgaccaacatttggcctc 462  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27056116 gcctcaacatgtcggataccctttgtagcgtttgtcaatttccactctctaaatttgttgtctctcccaatcttgccaagcttgaccaacatttggcctc 27056215  T
Q  463 atgcaaagcattaattacaattgattagaagatctggagatgcattttacttgtatttgttgatgttttcaagatctagaaaataaatc 551  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||    
T  27056216 atgcaaagcattaattacaattgattagaagatctggagatgcattttacttttatttgttgatgttttcgagatccagaaaataaatc 27056304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 584 - 774
Target Start/End: Original strand, 27056336 - 27056526
Alignment:
Q  584 tactaagaacttcattatattctctgaattaatnnnnnnnn--gtttgcgacctaaaatgggcaaaccgagccaaccaaactgaacaatttgccgaaccg 681  Q
    |||||||||||||||||||||||||||||||||          |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  27056336 tactaagaacttcattatattctctgaattaataaaaaaaaaagtttgcgaccaaaaatgggcaaaccgagccaaccaaactgaacaatttgctgaaccg 27056435  T
Q  682 gaaagctgtaatccgttcaaaccgattctttaggcatggcaacaatacccgtcctcgtggggtacccgcccatacccatcccaatttgacggg 774  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||| |||| | ||||||||||    
T  27056436 gaaagctgtaatccgttcaaaccgattc-ttaggcatggcaacaatacccgtcctcgt-gggtatccgcccatactcatctcgatttgacggg 27056526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 773 - 865
Target Start/End: Original strand, 27056562 - 27056649
Alignment:
Q  773 gggttttccccgatttcgaagtacgggtatgggacgggtaaaggggttatatctaatctacccaccccgaacccatacccatactcgtcccaa 865  Q
    ||||||| ||||||||| |||||| |||||||||||||||| ||||||||     ||||||||||||||||||||||| ||||||||||||||    
T  27056562 gggtttttcccgatttcaaagtacaggtatgggacgggtaacggggttat-----atctacccaccccgaacccatacacatactcgtcccaa 27056649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 773 - 865
Target Start/End: Original strand, 9642358 - 9642445
Alignment:
Q  773 gggttttccccgatttcgaagtacgggtatgggacgggtaaaggggttatatctaatctacccaccccgaacccatacccatactcgtcccaa 865  Q
    ||||||||||||||||| ||  ||||||||||||||||||| ||||||||     || || ||| ||||||||||||| ||||| ||||||||    
T  9642358 gggttttccccgatttcaaaacacgggtatgggacgggtaacggggttat-----atatatccatcccgaacccatactcatacccgtcccaa 9642445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 27056070 - 27056109
Alignment:
Q  7 agtgtgacactattgaatggtggaggtagacaaaaacccg 46  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  27056070 agtgtgacactattgaatagtggaggtagacaaaaacccg 27056109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 797 - 865
Target Start/End: Original strand, 29108853 - 29108916
Alignment:
Q  797 gggtatgggacgggtaaaggggttatatctaatctacccaccccgaacccatacccatactcgtcccaa 865  Q
    ||||||||||||||||| |||  |||||   || |||||||||||||||||||||||||| ||||||||    
T  29108853 gggtatgggacgggtaacggg--tatat---atgtacccaccccgaacccatacccatacccgtcccaa 29108916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 6e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 774 - 865
Target Start/End: Complemental strand, 10302170 - 10302084
Alignment:
Q  774 ggttttccccgatttcgaagtacgggtatgggacgggtaaaggggttatatctaatctacccaccccgaacccatacccatactcgtcccaa 865  Q
    |||||||||||||||| ||||||||||||| ||||||||| ||||||||     || |||||||||||||||||||||||||  ||||||||    
T  10302170 ggttttccccgatttcaaagtacgggtatgagacgggtaacggggttat-----atgtacccaccccgaacccatacccatatccgtcccaa 10302084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 713 - 784
Target Start/End: Complemental strand, 10302267 - 10302198
Alignment:
Q  713 aggcatggcaacaatacccgtcctcgtggggtacccgcccatacccatcccaatttgacggggttttccccg 784  Q
    ||||||||||||||||||||| | ||| |||||||||||||||||||  || ||||||  ||||||||||||    
T  10302267 aggcatggcaacaatacccgttcccgt-gggtacccgcccatacccactccgatttga-tgggttttccccg 10302198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 773 - 824
Target Start/End: Complemental strand, 43309570 - 43309519
Alignment:
Q  773 gggttttccccgatttcgaagtacgggtatgggacgggtaaaggggttatat 824  Q
    ||||||| ||||||||| ||  ||||||||||||||||||| ||||||||||    
T  43309570 gggtttttcccgatttcaaaacacgggtatgggacgggtaacggggttatat 43309519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 772 - 813
Target Start/End: Original strand, 32596191 - 32596232
Alignment:
Q  772 ggggttttccccgatttcgaagtacgggtatgggacgggtaa 813  Q
    |||||||||||||||||| ||  |||||||||||||||||||    
T  32596191 ggggttttccccgatttcaaaacacgggtatgggacgggtaa 32596232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 773 - 865
Target Start/End: Original strand, 30616288 - 30616375
Alignment:
Q  773 gggttttccccgatttcgaagtacgggtatgggacgggtaaaggggttatatctaatctacccaccccgaacccatacccatactcgtcccaa 865  Q
    ||||||||||||||||| ||  |||| |||||||||||||| | |||||||| |||     ||||||||||||||||||||||| ||||||||    
T  30616288 gggttttccccgatttcaaaacacggatatgggacgggtaacgaggttatatataa-----ccaccccgaacccatacccatacccgtcccaa 30616375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 773 - 865
Target Start/End: Original strand, 23546949 - 23547036
Alignment:
Q  773 gggttttccccgatttcgaagtacgggtatgggacgggtaaaggggttatatctaatctacccaccccgaacccatacccatactcgtcccaa 865  Q
    |||||||||||||| |||||  ||||||||||||||||||| |||  |||||   |  ||||||||||||||||||||||| |||||||||||    
T  23546949 gggttttccccgatctcgaaacacgggtatgggacgggtaacggg--tatat---aggtacccaccccgaacccatacccaaactcgtcccaa 23547036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 831 - 865
Target Start/End: Complemental strand, 34154442 - 34154408
Alignment:
Q  831 tacccaccccgaacccatacccatactcgtcccaa 865  Q
    |||||||||||||||||||||||||| ||||||||    
T  34154442 tacccaccccgaacccatacccatacccgtcccaa 34154408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 773 - 862
Target Start/End: Complemental strand, 34085317 - 34085233
Alignment:
Q  773 gggttttccccgatttcgaagtacgggtatgggacgggtaaaggggttatatctaatctacccaccccgaacccatacccatactcgtcc 862  Q
    ||||||| ||||||||| ||  ||| |||||||| |||||| |||||||||| ||     ||||||||||||||||||||||||||||||    
T  34085317 gggtttttcccgatttcaaaacacgagtatgggatgggtaacggggttatatgta-----cccaccccgaacccatacccatactcgtcc 34085233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 773 - 813
Target Start/End: Complemental strand, 5181121 - 5181081
Alignment:
Q  773 gggttttccccgatttcgaagtacgggtatgggacgggtaa 813  Q
    ||||||||||||||||| || ||||||||||||||||||||    
T  5181121 gggttttccccgatttcaaaatacgggtatgggacgggtaa 5181081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 711 - 773
Target Start/End: Original strand, 5565216 - 5565277
Alignment:
Q  711 ttaggcatggcaacaatacccgtcctcgtggggtacccgcccatacccatcccaatttgacgg 773  Q
    ||||||||| ||||||||||||||| | |||| |||||||||||||||| ||| |||||||||    
T  5565216 ttaggcatgacaacaatacccgtccccatggg-tacccgcccatacccaccccgatttgacgg 5565277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 773 - 824
Target Start/End: Original strand, 42908048 - 42908099
Alignment:
Q  773 gggttttccccgatttcgaagtacgggtatgggacgggtaaaggggttatat 824  Q
    ||||||||||||||||| || |||||||| ||||||||||| |||| |||||    
T  42908048 gggttttccccgatttcaaaatacgggtacgggacgggtaatggggatatat 42908099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 716 - 774
Target Start/End: Complemental strand, 22900969 - 22900912
Alignment:
Q  716 catggcaacaatacccgtcctcgtggggtacccgcccatacccatcccaatttgacggg 774  Q
    |||||||||||||||||||||| | ||||||||||||  ||||||||| ||||||||||    
T  22900969 catggcaacaatacccgtcctcat-gggtacccgccctaacccatcccgatttgacggg 22900912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 712 - 781
Target Start/End: Complemental strand, 10212585 - 10212517
Alignment:
Q  712 taggcatggcaacaatacccgtcctcgtggggtacccgcccatacccatcccaatttgacggggttttcc 781  Q
    |||||||| ||||||||||||| |  ||||| |||||||||||||||| ||| |||||||| | ||||||    
T  10212585 taggcatgacaacaatacccgtacctgtggg-tacccgcccatacccaccccgatttgacgagtttttcc 10212517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 744 - 789
Target Start/End: Original strand, 27302714 - 27302759
Alignment:
Q  744 tacccgcccatacccatcccaatttgacggggttttccccgatttc 789  Q
    |||||| ||| ||| |||||||||||||||| ||||||||||||||    
T  27302714 tacccgtccaaaccaatcccaatttgacgggattttccccgatttc 27302759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University