View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4523-Insertion-5 (Length: 504)
Name: NF4523-Insertion-5
Description: NF4523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4523-Insertion-5 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] scaffold0458 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 8 - 504
Target Start/End: Original strand, 44488753 - 44489249
Alignment:
| Q |
8 |
atatctgccccacttctcattgcaactgcttggaatttgcttggcccggctgtgttccgaaatgttatgttaactgctacaaatcctggtgctacgacag |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44488753 |
atatctgccccacttctcattgcaactgcttggaatttgcttggcccggctgtgttccgaaatgttatgttaactgctacaaatcctggtgctacgacag |
44488852 |
T |
|
| Q |
108 |
ctacaagaacatatagtagacttacgtaaaatttctcggtgaggaaaacaattgcattgctagtttaaagtaaactttttgttaaaagtctcacgtccaa |
207 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44488853 |
ctacaaaaacatatagtagacttacgtaaaatttctcggtgaggaaaacaattgcactgctagtttaaagtaaactttttgttaaaagtctcacgtccaa |
44488952 |
T |
|
| Q |
208 |
taagatatagtctgaaaatgtgtttataaatgaagacaatatatcttcattgtaaaagctgattttgtaaggattgaattagacctaaccaaaagatg-- |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44488953 |
taagatatagtctgaaaatgtgtttataaatgaagaca----atcttcattgtaaaagctgattttgtaaggattgaattagacctaaccaaaagatgta |
44489048 |
T |
|
| Q |
306 |
--tatagtttctgaaaatgaaataaaaattgttttcttaccaaatgttggggaattaaaagttgtccatccatcaccaacactgtgattgccggtgataa |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44489049 |
tatatagtttctgaaaatgaaataaaaattgttttcttaccaaatgttggggaattaaaagttgtccatccatcaccaacactgtgattgccggtgataa |
44489148 |
T |
|
| Q |
404 |
ttgttcggttgattccatctccgatcatcatcagatacgccttgttttgagggatagagacatattcttcataaacgccctctttgataaatatcatgaa |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44489149 |
ttgttcggttgattccatctccgatcatcatcagatacgccttgttttgagggatagagacatattcttcataaacgccctctttgataaatatcatgaa |
44489248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0458 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0458
Description:
Target: scaffold0458; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 2723 - 2805
Alignment:
| Q |
8 |
atatctgccccacttctcattgcaactgcttggaatttgcttggcccggctgtgttccgaaatgttatgttaactgctacaaa |
90 |
Q |
| |
|
|||||||| |||||||| | ||||||||||||| ||||||||| || || ||||| |||||||||||||||||||| ||||| |
|
|
| T |
2723 |
atatctgctccacttcttagtgcaactgcttggtgtttgcttggtccagcggtgttgcgaaatgttatgttaactgccacaaa |
2805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0458; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 12764 - 12846
Alignment:
| Q |
8 |
atatctgccccacttctcattgcaactgcttggaatttgcttggcccggctgtgttccgaaatgttatgttaactgctacaaa |
90 |
Q |
| |
|
|||||||| |||||||| | ||||||||||||| ||||||||| || || ||||| |||||||||||||||||||| ||||| |
|
|
| T |
12764 |
atatctgctccacttcttagtgcaactgcttggtgtttgcttggtccagcggtgttgcgaaatgttatgttaactgccacaaa |
12846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 39450898 - 39450816
Alignment:
| Q |
8 |
atatctgccccacttctcattgcaactgcttggaatttgcttggcccggctgtgttccgaaatgttatgttaactgctacaaa |
90 |
Q |
| |
|
|||||||| |||||||| | ||||||||||||| ||||||||| || || ||||| |||||||||||||||||||| ||||| |
|
|
| T |
39450898 |
atatctgctccacttcttagtgcaactgcttggtgtttgcttggtccagcggtgttgcgaaatgttatgttaactgccacaaa |
39450816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 39460285 - 39460203
Alignment:
| Q |
8 |
atatctgccccacttctcattgcaactgcttggaatttgcttggcccggctgtgttccgaaatgttatgttaactgctacaaa |
90 |
Q |
| |
|
|||||||| |||||||| | ||||||||||||| ||||||||| || || ||||| |||||||||||||||||||| ||||| |
|
|
| T |
39460285 |
atatctgctccacttcttagtgcaactgcttggtgtttgcttggtccagcggtgttgcgaaatgttatgttaactgccacaaa |
39460203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 39471770 - 39471688
Alignment:
| Q |
8 |
atatctgccccacttctcattgcaactgcttggaatttgcttggcccggctgtgttccgaaatgttatgttaactgctacaaa |
90 |
Q |
| |
|
|||||||| |||||||| | ||||||||||||| ||||||||| || || ||||| |||||||||||||||||||| ||||| |
|
|
| T |
39471770 |
atatctgctccacttcttagtgcaactgcttggtgtttgcttggtccagcggtgttgcgaaatgttatgttaactgccacaaa |
39471688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 236
Target Start/End: Original strand, 10485399 - 10485448
Alignment:
| Q |
187 |
tgttaaaagtctcacgtccaataagatatagtctgaaaatgtgtttataa |
236 |
Q |
| |
|
||||||||||||||| | || ||||||||||||||||||||||||||| |
|
|
| T |
10485399 |
tgttaaaagtctcacattggatgagatatagtctgaaaatgtgtttataa |
10485448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University