View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4523-Insertion-7 (Length: 220)
Name: NF4523-Insertion-7
Description: NF4523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4523-Insertion-7 |
 | |
|
| [»] scaffold0067 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0067 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 12 - 220
Target Start/End: Original strand, 39858 - 40070
Alignment:
| Q |
12 |
agaatcagaatacaccatagaaaacaaagaacttctccgatggtgacttataaaaacaacaaaagcagcacaacagtcatagttgatccttcagaacttt |
111 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
39858 |
agaatcaaaatacagcatagaaaacaaagaacttctccggtggcgacttccaaaaacaacaaaagcagcacaaca-tcatagttgatctttcagaacttt |
39956 |
T |
|
| Q |
112 |
tttgtcca-----tctccattcccacacttctccagtgttgagtcattgtgattttactaatttgaaatccttgaggttgttggaacttggaatcctcaa |
206 |
Q |
| |
|
|||||||| |||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39957 |
tttgtccattccatctccattcccacacttctccaatggtgagtcatagtgattttactaatttgaaatccttgaggttgttggaacttggaatcctcaa |
40056 |
T |
|
| Q |
207 |
cactcactccccca |
220 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
40057 |
cactcactccccca |
40070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University