View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4523-Insertion-8 (Length: 218)
Name: NF4523-Insertion-8
Description: NF4523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4523-Insertion-8 |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 8 - 218
Target Start/End: Original strand, 1329831 - 1330044
Alignment:
| Q |
8 |
gtcgttgctacttctgttatgtcttaggagttggtcgctgccacaatcatctatttgtgcaacttgtctttactctttatgnnnnnnnnnnnnnnn---g |
104 |
Q |
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| T |
1329831 |
gtcgttgctacttctgttatgtcttaggagttggtcgctgccacaatcatctatttgtgcaacttgtctttactctttatggtttttttgttttgttttg |
1329930 |
T |
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| Q |
105 |
aaacatcatatttattaaaccaacaacccatacaagacgtaatagttgtggacgagcataaacaatacaagnnnnnnnccaaactccaggcagcaaaata |
204 |
Q |
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| T |
1329931 |
aaacatcataattattaaaccaacaacccatacaagacgtaatagttgtggacgagcataaacaatacaagaaaaaaaccaaactccaggcagtaaaata |
1330030 |
T |
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| Q |
205 |
cacggctatcatgg |
218 |
Q |
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| T |
1330031 |
cacggctatcatgg |
1330044 |
T |
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Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 113 - 218
Target Start/End: Original strand, 9850041 - 9850146
Alignment:
| Q |
113 |
tatttattaaaccaacaacccatacaagacgtaatagttgtggacgagcataaacaatacaagnnnnnnnccaaactccaggcagcaaaatacacggcta |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||| ||||| |
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| T |
9850041 |
tatttattaaaccaacaacccatacaagacgtaatagttgtggacgagcataaacaatacaagaaaaataccaaactccaggcagaaaagtacatggcta |
9850140 |
T |
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| Q |
213 |
tcatgg |
218 |
Q |
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| T |
9850141 |
tcatgg |
9850146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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