View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4523-Insertion-9 (Length: 217)
Name: NF4523-Insertion-9
Description: NF4523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4523-Insertion-9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 8 - 216
Target Start/End: Complemental strand, 39515767 - 39515559
Alignment:
| Q |
8 |
acatcaaaaggccaaaacttatatagcaactactcttgaacaaaatggacttcattttctcctcactttgtggttaagactttccctacgggcagacgat |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39515767 |
acatcaaaaggccaaaacttatatagcaactactcttgaacaaaatggacttcattttctcctcactttgtggttaagactttccctacgggctgacgat |
39515668 |
T |
|
| Q |
108 |
gatgtagacgataatgcagatgaaaaacctgattggttattttcagccatatccttgtgaaatgccttctgcacctcatctttaagttccatgaaccgcg |
207 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39515667 |
gatgtagacgacaatgcagatgaaaaacctgattggttattttcagccatatccttgtgaaatgccttctgcacctcatctttaagttccatgaaccgcg |
39515568 |
T |
|
| Q |
208 |
ctttctttg |
216 |
Q |
| |
|
||||||||| |
|
|
| T |
39515567 |
ctttctttg |
39515559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University