View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4523_high_11 (Length: 365)
Name: NF4523_high_11
Description: NF4523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4523_high_11 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 12 - 365
Target Start/End: Complemental strand, 52034120 - 52033767
Alignment:
| Q |
12 |
atgagagcccaccatggcatttgtatctcttctttcatgaaaatacacaatgcaagtgcaagtaaaaatgaaaccacaagcgtaacatgaaaccaccaat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52034120 |
atgagagcccaccatggcatttgtatctcttctttcttgaaaatacacaatgcaagtgcaagtaaaaatgaaaccacaagcgtaacatgaaaccaccaat |
52034021 |
T |
|
| Q |
112 |
taggtatgtctttatacttcttcatcaatcttgtgtgaatgtcttcctttccagttcgggaagattgaagttgatgatatatatctctgcagttagttaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52034020 |
taggtatgtctttatacttcttcatcaatcttgtgtgaatgtcttcctttccagttcgggaagattgaagttgatgatatatatctctgcagttagttaa |
52033921 |
T |
|
| Q |
212 |
tttaatcagcaatagtaatttaattccacaatttgagaactatatatgcaatgtaacttaaccataacttactttccattaaatatggcaacgtgagtga |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52033920 |
tttaatcagcaatagtaatttaattccacaatttgagaactatatatgcaatgtaacttaaccataacttactttccattaaatatggcaacgtgagtga |
52033821 |
T |
|
| Q |
312 |
gtgtagagacaatggcagcaaagccaataccataggaaatagaaaagaagatac |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52033820 |
gtgtagagacaatggcagcaaagccaataccataggaaatagaaaagaagatac |
52033767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University