View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4523_high_17 (Length: 289)
Name: NF4523_high_17
Description: NF4523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4523_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 43664333 - 43664058
Alignment:
| Q |
1 |
tatgtaaaagatactatccaatgtttgaggttctattttatttacagtgattgaatttaattcattcacttttgagttgcaatttcctgacagcagttta |
100 |
Q |
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| T |
43664333 |
tatgtaaaagatactatccaatgtttgaggttctattttatttacagtgattgaatttaattcattcacttttgagttgcaatttcctgacagcagttta |
43664234 |
T |
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| Q |
101 |
gctttctcgtgatgctctttcttttgaagtccaaaatctgt----------ttcttcaattattatccatttctttcctaaagagagaatagttactaaa |
190 |
Q |
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| T |
43664233 |
gctttctcgtgatgttctttgttttgaagtcc-aaatctgtttctttaatgttcttcaattattattcatttctttcctaaagagagaatagttactaaa |
43664135 |
T |
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| Q |
191 |
agtgcttaaaatttacaaagcaaaaagtcaagaaactttatgcaatgcaagttaaactaacactaatcttgtgttattatttgttca |
277 |
Q |
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| T |
43664134 |
agtgcttaaaatt----------aaagtcaagaaactttatgcaatgcaagttaaactaacactaatcttgtgttattatttgttca |
43664058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 129; Significance: 8e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 141 - 277
Target Start/End: Original strand, 24559738 - 24559874
Alignment:
| Q |
141 |
tttcttcaattattatccatttctttcctaaagagagaatagttactaaaagtgcttaaaatttacaaagcaaaaagtcaagaaactttatgcaatgcaa |
240 |
Q |
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| T |
24559738 |
tttcttcaattattattcatttctttcctaaagagagaatagttactaaaagtgcttaaaatttacaaagcaaaaagtcaagaaactttatacaatgcaa |
24559837 |
T |
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| Q |
241 |
gttaaactaacactaatcttgtgttattatttgttca |
277 |
Q |
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| T |
24559838 |
gttaaactaacactaatcttgtgttattatttgttca |
24559874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 5 - 96
Target Start/End: Original strand, 51815370 - 51815461
Alignment:
| Q |
5 |
taaaagatactatccaatgtttgaggttctattttatttacagtgattgaatttaattcattcacttttgagttgcaatttcctgacagcag |
96 |
Q |
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| T |
51815370 |
taaaagatactatccaatgtttgaggtcatacttcatgtacaatgattgaatttatttcattcacttttgagttgcaatttcctgacagcag |
51815461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 195
Target Start/End: Original strand, 51815510 - 51815564
Alignment:
| Q |
141 |
tttcttcaattattatccatttctttcctaaagagagaatagttactaaaagtgc |
195 |
Q |
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| T |
51815510 |
tttcttcaactattatccatttctttcctaaagagagaagagttaataaaagtgc |
51815564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 170 - 235
Target Start/End: Complemental strand, 19138577 - 19138512
Alignment:
| Q |
170 |
aaagagagaatagttactaaaagtgcttaaaatttacaaagcaaaaagtcaagaaactttatgcaa |
235 |
Q |
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| T |
19138577 |
aaagagagaatagttactaaaagtgcttaaaatttacaaagcaaaaagtaaagtaactttatgcaa |
19138512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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