View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4523_high_19 (Length: 260)
Name: NF4523_high_19
Description: NF4523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4523_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 18632913 - 18633147
Alignment:
| Q |
18 |
cacagagaccatacctgtttgtataaaaagcacatttatttgcaattttacactgatcttgctacacaaatcaaaccacattattgatacgcgtcaaaat |
117 |
Q |
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| T |
18632913 |
cacagagaccatacctatttgtataaaaagcacatttatttgcaattttacactgatcttgcaacacaaatcaaaccacattattgatacgcatcaaaat |
18633012 |
T |
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| Q |
118 |
ataacctatgataatattatgcactaattagatcaaaatttacactagctttgcaacataaaccataccataatattatacctatgataatccaaatcat |
217 |
Q |
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| T |
18633013 |
ataacctatgataatattatgcactaattagatcaaaatttacactaactttgcaacataaaccataccataatattatacctatgataatccaaatcat |
18633112 |
T |
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| Q |
218 |
gcaatatatctgaaacaaaacatttagtgatgatg |
252 |
Q |
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| T |
18633113 |
gcaatatatctgaaacaaaacatttagtggtgatg |
18633147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 246
Target Start/End: Original strand, 28975430 - 28975505
Alignment:
| Q |
171 |
caacataaaccataccataatattatacctatgataatccaaatcatgcaatatatctgaaacaaaacatttagtg |
246 |
Q |
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| T |
28975430 |
caacacaaatcaaaccataatattatacatatgataatccaaatcgtgcaaaatattcaaaacaaaatatttagtg |
28975505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 227
Target Start/End: Complemental strand, 33270570 - 33270454
Alignment:
| Q |
111 |
tcaaaatataacctatgataatattatgcactaattagatcaaaatttacactagctttgcaacataaaccataccataa-tattatacctatgataatc |
209 |
Q |
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| T |
33270570 |
tcaaaacataaggtatgataatatttt-cattaattaaatcaaaatttacattgattttgcaacacaaatcaaaccataaatatcatacatatgataatc |
33270472 |
T |
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| Q |
210 |
caaatcatgcaatatatc |
227 |
Q |
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| T |
33270471 |
caaatcttgcaaaatatc |
33270454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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