View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4523_high_2 (Length: 571)
Name: NF4523_high_2
Description: NF4523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4523_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 16 - 562
Target Start/End: Original strand, 39783336 - 39783882
Alignment:
| Q |
16 |
gcaacttcaatcatagtcacaaactcgcatagacatcaaatggccgatgcagcttcaatattggtcgtgacatcaannnnnnngatgtctatgagttttt |
115 |
Q |
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| T |
39783336 |
gcaacttcaatcatagtcacagactcgcatagacatcaaatggccgatgcagcttcaatattggtcgtgacatcaatttttttgatgtctatgagttttt |
39783435 |
T |
|
| Q |
116 |
gactatgattgaagctgcattggtcagtataagttatagcaaagacatatgcaacttcaatatcagtaacggagacatcaaataccttgaactactaata |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
39783436 |
gactatgattgaagctgcattggtcagtataagttatagcaaagacatatgcaacttcaatatcagtaatggagacatcaaataccttgaactactaata |
39783535 |
T |
|
| Q |
216 |
cttatagaaagaataacgtggaggaatagatatagaagtacctgttgtttgaaagtttcttcatgctttaacatggccatcctcatgtattctttgtcac |
315 |
Q |
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| T |
39783536 |
cttatagaaagaataacgtggaggaatagatatagaagtacctgttgtttgaaagtttcttcatgctttaacatggccatcctcatgtattctttgtcac |
39783635 |
T |
|
| Q |
316 |
gtgacctaacaagcttctccatgaatgatcaatttagtttctatagaggctaactagttttgaaccttctttgtcccaagtttaccttcatacacaggtt |
415 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39783636 |
atgacctaacaagcttctccatcaatgatcaatttagtttctatagaggctaactagttttgaaccttctttgtcccaagtttaccttcatacacaggtt |
39783735 |
T |
|
| Q |
416 |
aagcttaaatgaggaaaattctaagagaatagagttatttatgtagaaaataggattgattctaggaaagcacataaatatttatggtctaattgattct |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39783736 |
aagcttaaatgaggaaaattctaagagaatagagttatttatatagaaaataggattgattctaggaaagcacataaatatttatggtctaattgattct |
39783835 |
T |
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| Q |
516 |
tgaaacattggcacaaaatgatggcatctacttccttttagtataat |
562 |
Q |
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| T |
39783836 |
tgaaacattggcacaaaatgatggcatctacttccttttagtataat |
39783882 |
T |
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