View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4523_high_23 (Length: 250)
Name: NF4523_high_23
Description: NF4523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4523_high_23 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 5 - 233
Target Start/End: Original strand, 31520842 - 31521074
Alignment:
| Q |
5 |
gaggagcacagatgcatttatcaaacaaatcttgattaagtgtttaacaagagatacatcatatatttcaaattcctaaaacaagagatgtaaacgaaga |
104 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31520842 |
gaggaccacaaatgcatttatcaaacaaatcttgattaagtgtttaacaagagatacatcatacatttcaaattcctaaaacaagagatgtaaacgaaga |
31520941 |
T |
|
| Q |
105 |
aaataaaatttgaaaagaaaatacattgtttcttctttgcagaaaaagttatagcatttgaacacttatttagcatgtggttagtttcaattcaatgggg |
204 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31520942 |
aaataaaatttcaaaagaaaatacattgtttcttctttgcagaaaaagttatagcatttgaacacttatttagcatgtggttagtttcaattcaatgggg |
31521041 |
T |
|
| Q |
205 |
at----aagcatccacaaacatattcacaaatt |
233 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |
|
|
| T |
31521042 |
ataagcaagcatccacaaacatattcacaaatt |
31521074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University