View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4523_high_27 (Length: 236)
Name: NF4523_high_27
Description: NF4523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4523_high_27 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 7160754 - 7160535
Alignment:
| Q |
1 |
ccaaatctctgcaacgccacaaattaagatatcttaaatgcttcaattttccgattgattcacacaccttagttaaagaacaacatgatatttttaggac |
100 |
Q |
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||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | || ||| |
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| T |
7160754 |
ccaaatctctgcaacgccataagttaagatatcttaaatgcttcaattttccgattgattcacacaccttacttaaagaacaacatgatatctataagac |
7160655 |
T |
|
| Q |
101 |
gcgtaagtatttgaattttaaaataacagatacttccttctcgttcctattctccgaaatattggtaagaaaaattaaagttcgcaacttgcttgcatcc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
7160654 |
gcgtaagtatttgaattttaaaataacagatacttccttctcgttccaattctctgaaatgttggtaagcaaaattaaagttcgcaacttgcttgcatcc |
7160555 |
T |
|
| Q |
201 |
aatgattctaacaaaccaat |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
7160554 |
aatgattctaacaaaccaat |
7160535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 220
Target Start/End: Original strand, 3918077 - 3918195
Alignment:
| Q |
102 |
cgtaagtatttgaattttaaaataacagatacttccttctcgttcctattctccgaaatattggtaagaaaaattaaagttcgcaacttgcttgcatcca |
201 |
Q |
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| T |
3918077 |
cgtaagtatttgaattttgatataacaaacaattccttctcattcatactctctgaattgttggacaacaaaatcaaagttcgcatctttcttgcattca |
3918176 |
T |
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| Q |
202 |
atgattctaacaaaccaat |
220 |
Q |
| |
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|||| || ||||||||||| |
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| T |
3918177 |
atgactccaacaaaccaat |
3918195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 220
Target Start/End: Original strand, 3172662 - 3172861
Alignment:
| Q |
21 |
aaattaagatatcttaaatgcttcaattttccgattgattcacacacc---ttagttaaagaacaacatgatatttttaggacgcgtaagtatttgaatt |
117 |
Q |
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||||||||||||||||||||| |||||||||| ||||| ||||| | | ||| ||||||||||| || | || | |||||||||||||||||||| |
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| T |
3172662 |
aaattaagatatcttaaatgcctcaattttccaattgaatcacagaacgacttacttaaagaacaa---gacaacttcaagacgcgtaagtatttgaatt |
3172758 |
T |
|
| Q |
118 |
ttaaaataacagatacttccttctcgttcctattctccgaaatattggtaagaaaaattaaagttcgcaacttgcttgcatccaatgattctaacaaacc |
217 |
Q |
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| T |
3172759 |
ttgaaataaaagacaattccttttcattccaagtctcccaattattggaaaacaaaatcaaagttcgcatcctgattgcatccaccgactttaacaaacc |
3172858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 26 - 126
Target Start/End: Original strand, 3169095 - 3169195
Alignment:
| Q |
26 |
aagatatcttaaatgcttcaattttccgattgattcacacaccttagttaaagaacaacatgatatttttaggacgcgtaagtatttgaattttaaaata |
125 |
Q |
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||||||||||||||||||||||||| | ||||| ||||||| |||| |||||||||| ||||| || | ||||||||| |||||||||||| ||||| |
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| T |
3169095 |
aagatatcttaaatgcttcaattttacaattgaatcacacaacttacataaagaacaatgtgatagcttcaagacgcgtaaatatttgaattttgaaata |
3169194 |
T |
|
| Q |
126 |
a |
126 |
Q |
| |
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| |
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|
| T |
3169195 |
a |
3169195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 3281330 - 3281394
Alignment:
| Q |
24 |
ttaagatatcttaaatgcttcaattttccgattgattcacacaccttagttaaagaacaacatga |
88 |
Q |
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||||||||||||||||| ||||||||||| ||||| | | ||| ||| ||||||||||| |||| |
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| T |
3281330 |
ttaagatatcttaaatgtttcaattttccaattgaattagacaacttgcttaaagaacaatatga |
3281394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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