View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4523_high_3 (Length: 534)
Name: NF4523_high_3
Description: NF4523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4523_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 123; Significance: 6e-63; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 15200125 - 15199975
Alignment:
| Q |
19 |
gataaaaggaacatatcaatgaaatccaatattaggcagccatatataaaatacgatttggttgagataatgctatcgaaaaaatctaggacaaagagtc |
118 |
Q |
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| T |
15200125 |
gataaaaggaacatatcaatgaaatccaatattaggcagccatata--aaatacgatttggttgagataatgctatcgaaaaaatctaggacaaagagtc |
15200028 |
T |
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| Q |
119 |
ggaaaaactcgatgaaagtagttggtacttggtatgttgaagataatgaaacttaaactt |
178 |
Q |
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| T |
15200027 |
ggaaaaactcgatgaaagtagtt-------ggtatgttgaagataatgaaacttaaactt |
15199975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 383 - 437
Target Start/End: Complemental strand, 15199859 - 15199805
Alignment:
| Q |
383 |
tccgtgcacggcagtctcacactacttgtggctacacttgctcctttgctcacca |
437 |
Q |
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| T |
15199859 |
tccgtgcacggcagtctcacactacttgtggctacacttgctcctttgctcacca |
15199805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 15207282 - 15207177
Alignment:
| Q |
43 |
tccaatattaggcagccatata---taaaatacgatttggttgagataatgctatcg-aaaaaatctaggacaaagagtcggaaaaactcgatgaaagta |
138 |
Q |
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| T |
15207282 |
tccaatattaggtaaccatatagtatagaatatgatttggttgaaataatgctatggtaaaaaaactaggacagagagtcggaaaagctcgattaaagta |
15207183 |
T |
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| Q |
139 |
gttggt |
144 |
Q |
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| T |
15207182 |
gttggt |
15207177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 298
Target Start/End: Complemental strand, 15199976 - 15199945
Alignment:
| Q |
267 |
ttaaatttactgtaatgattaaatgttatcat |
298 |
Q |
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| T |
15199976 |
ttaaatttactgtaatgattaaatgttatcat |
15199945 |
T |
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