View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4523_high_4 (Length: 516)
Name: NF4523_high_4
Description: NF4523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4523_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 1 - 505
Target Start/End: Complemental strand, 43699700 - 43699196
Alignment:
| Q |
1 |
cggtgctccattcaaggattccaagacaccttgtttgctgtttccggaagacaattctacaaaaactgtgaaatctatggtatcgtcgacttcatcttcg |
100 |
Q |
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| T |
43699700 |
cggtgctccattcaaggattccaagacaccttatttgctgtttccggaagacaattctacaaaaactgtgaaatatatggtaccgtcgacttcatcttcg |
43699601 |
T |
|
| Q |
101 |
gcaacgctgcagctgtatttcaagactgtatggtttatgcacgctatcggcagtttgtggtattcaccgctcagtcacgtggaaatccatctgaaaaaac |
200 |
Q |
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| T |
43699600 |
gcaacgctgcagctgtatttcaagactgtatggtttatgcacgctatcgacagttcgtggtattcaccgcacaatcacgtggaaatccatctgaaaaaac |
43699501 |
T |
|
| Q |
201 |
aggtttcacattccaacattgtaatttcaccatgtcacctgaagatgaaggcagaaaatcagaggtgcgtggaacattgggtcgtccttggagggcatat |
300 |
Q |
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| T |
43699500 |
aggtttcacattccaacattgtaatttcaccatgtcacctgaagatgaaggcaaaaaatcagaggtgcgtggaacattgggtcgtccttggagggcatat |
43699401 |
T |
|
| Q |
301 |
tccacagtggctatattgcaatgtttcatagattcctttgtggatactagaggttgggaacagatggagggacaacccaatgataaggttacttatgtgg |
400 |
Q |
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| T |
43699400 |
tccacagtggctatattgcaatgtttcatagattcctttgtggatactagaggttgggaacagatggagggacaacccaatgataaggttacttatgtgg |
43699301 |
T |
|
| Q |
401 |
agtttgagaatgttggacctggatctaacactgatggtagagtgaattggcctggtgttacagttattcgcaactcggaccaagcactcccgttcactgc |
500 |
Q |
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| T |
43699300 |
agtttgagaatgttggacctggatctaacactgatggtagagtgaattggcctggtgttaaagttattcgcaactcggaccaagcactcccgttcactgc |
43699201 |
T |
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| Q |
501 |
ttcat |
505 |
Q |
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| T |
43699200 |
ttcat |
43699196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 4 - 503
Target Start/End: Complemental strand, 45514499 - 45514000
Alignment:
| Q |
4 |
tgctccattcaaggattccaagacaccttgtttgctgtttccggaagacaattctacaaaaactgtgaaatctatggtatcgtcgacttcatcttcggca |
103 |
Q |
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|||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| || || | ||||||||||||| ||||| |
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| T |
45514499 |
tgctccatccaaggattccaagacaccttgtgggctgtttccggtagacaattctacaaaaactgtgaaatatacggcactgtcgacttcatctacggca |
45514400 |
T |
|
| Q |
104 |
acgctgcagctgtatttcaagactgtatggtttatgcacgctatcggcagtttgtggtattcaccgctcagtcacgtggaaatccatctgaaaaaacagg |
203 |
Q |
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| T |
45514399 |
acgctgccgctgtatttcaagactgcatggtttatgcacgctatagacagtttgtgacattcaccgcacagtcacgtgaaagtccatatgaaaaaacagg |
45514300 |
T |
|
| Q |
204 |
tttcacattccaacattgtaatttcaccatgtcacctgaagatgaaggcagaaaatcagaggtgcgtggaacattgggtcgtccttggagggcatattcc |
303 |
Q |
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| T |
45514299 |
tttcacattccaacgttgtaaattcacaatgtcacctgaagatgagaagagaaagtcagaggtgcatgcaacattaggtcgtccttggagggcatattca |
45514200 |
T |
|
| Q |
304 |
acagtggctatattgcaatgtttcatagattcctttgtggatactagaggttgggaacagatggagggacaacccaatgataaggttacttatgtggagt |
403 |
Q |
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||||| ||||||||||| |||||||||||||| | || ||| | |||||||||||| |||| || | ||| |||||| ||||||||||| |||| |
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| T |
45514199 |
acagttgctatattgcattgtttcatagattcaatggttgatccaagaggttgggaagggatgtcaggtctggccactgataaagttacttatgttgagt |
45514100 |
T |
|
| Q |
404 |
ttgagaatgttggacctggatctaacactgatggtagagtgaattggcctggtgttacagttattcgcaactcggaccaagcactcccgttcactgcttc |
503 |
Q |
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| T |
45514099 |
ttgagaatgttggacctggatcaaacactgatggtagagtggattggccaggtgttacagttcttcgcaacccaaacaaagcactccctttcactgcttc |
45514000 |
T |
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