View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4523_high_5 (Length: 448)
Name: NF4523_high_5
Description: NF4523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4523_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 18 - 438
Target Start/End: Complemental strand, 569060 - 568640
Alignment:
| Q |
18 |
attattggtgtgacttaccctgctgcaatggagtgaggttcaataatttgtccatcaccatcttgtaataaataggagatagcaccatgataaacaccca |
117 |
Q |
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| T |
569060 |
attattggtgtgacttaccctgctgcaatggagtgaggttcaataatttgtccatcaccatcttgtaataaataggagatagcaccatgataaacaccca |
568961 |
T |
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| Q |
118 |
tttctcctttggccaaagtggaagaatgttttccactttctaaccctaaaccagcagcttcaactccaatcaatctcacatctatgtctgatagaaactc |
217 |
Q |
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| T |
568960 |
tttctcctttggttaaagtggaagaatgttttccactttctaaccctaaaccagcagcttcaactccaatcaatctcacatctgtgtctgatagaaactc |
568861 |
T |
|
| Q |
218 |
atggaacatacctaaagcatttgaacctgttccaacacttgcaacaataatgtctggttttcctccccatttttcccatgcttgtttccttgtttctttc |
317 |
Q |
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| T |
568860 |
atggaacatacctaaagcatttgaacctgttccaacacttgcaacaataatgtctggttttcctccccatttttcccatgcttgtttccttgtttctttc |
568761 |
T |
|
| Q |
318 |
ccaatcactgactgaaactcacgtaccatggtgggacatggatgtggtcccaccgctgaacctgacaagtggtagctgttttccaagtctccaacccaac |
417 |
Q |
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| T |
568760 |
ccaatcactgactgaaactcacgtaccatggtgggacatggatgtggtcccaccgctgaacctgacaagtggtagctgttttccaggtctccaacccaac |
568661 |
T |
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| Q |
418 |
aacgaaaagcctctgatgatg |
438 |
Q |
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| T |
568660 |
aacgaaaagcctctgatgatg |
568640 |
T |
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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 249 - 364
Target Start/End: Complemental strand, 20172542 - 20172427
Alignment:
| Q |
249 |
ccaacacttgcaacaataatgtctggttttcctccccatttttcccatgcttgtttccttgtttctttcccaatcactgactgaaactcacgtaccatgg |
348 |
Q |
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||||||| ||| || | ||| ||||| || ||||||||||||||| ||||||| || |||||||||||||| ||||||| |||||||| | |||||| |
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| T |
20172542 |
ccaacacatgctactagaatatctggcttccctccccatttttccaatgcttgctttcttgtttctttccctatcactgcatgaaactctcttaccatca |
20172443 |
T |
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| Q |
349 |
tgggacatggatgtgg |
364 |
Q |
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| T |
20172442 |
taggatatggatgtgg |
20172427 |
T |
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