View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4523_high_7 (Length: 417)
Name: NF4523_high_7
Description: NF4523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4523_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 16 - 408
Target Start/End: Original strand, 5105210 - 5105602
Alignment:
| Q |
16 |
ataagctccttttgtgtagtaacttaaagtgctcatatgcatcgttgagagattaattcctataatcattggacataatcataggaacattgaagcttca |
115 |
Q |
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| T |
5105210 |
ataagctccttttgtgtagtaacttaaagtgctcatatgcatcgttgagagattaattcctataatcattggacataatcataggaacattgaagcttca |
5105309 |
T |
|
| Q |
116 |
tgggtcatcaagctttttgtgggacctgtatttcaataatatcacaacaattttttgttatagaggcaaattcttcgtctcattgtttggttgtcacctt |
215 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||| |
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| T |
5105310 |
tgggtcttcaagctttttgtgggacctgtatttcaataatatcacaacaattttttgttatagagacaaattcttcatctcattgtttggttgtcgcctt |
5105409 |
T |
|
| Q |
216 |
cttaatgtcttgaagaaatttaacacaacacggactttgcttaaacatttccttgattagtgtctttgttataaatgttgctaaggctttaatgaccttt |
315 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5105410 |
cttaatgtcttgaagaaaattaacacaacacggactttgcttaaacatttccttgattagtgtctttgttataaatgttgctaaggctttaatgaccttt |
5105509 |
T |
|
| Q |
316 |
tgaaaattggcattctcatcttttgaggtgtcatcttcttcaaacttctcatttccttttatcgatttcacctccatcatcggtatctcattg |
408 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5105510 |
tgaaaattagcatcctcatcttttgaggtgtcatcttcttcaagtttctcttttccttttatcgatttcacctccatcatcggtatctcattg |
5105602 |
T |
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